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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G17980
Z-value: 0.71
Transcription factors associated with AT4G17980
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G17980
|
AT4G17980 | NAC domain containing protein 71 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC071 | arTal_v1_Chr4_-_9980555_9980555 | 0.39 | 3.9e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 2.86 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 2.67 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 2.27 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 2.24 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 2.23 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 2.18 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 2.18 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 2.17 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 2.16 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 2.16 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G17980
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 24.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 9.2 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.2 | 8.5 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.2 | 8.3 | GO:0006623 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.7 | 6.7 | GO:0045836 | positive regulation of meiotic nuclear division(GO:0045836) |
| 1.3 | 6.5 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.0 | 6.5 | GO:0006511 | ubiquitin-dependent protein catabolic process(GO:0006511) |
| 0.1 | 5.5 | GO:0031349 | positive regulation of defense response(GO:0031349) |
| 0.1 | 5.3 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.2 | 5.1 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.7 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 7.7 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 6.7 | GO:0044216 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.1 | 6.2 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 4.4 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.2 | 3.9 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.4 | 3.8 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.1 | 3.8 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.6 | 3.7 | GO:0005776 | autophagosome(GO:0005776) |
| 0.1 | 3.6 | GO:0090406 | pollen tube(GO:0090406) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.0 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 12.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 11.9 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 10.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 9.9 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.0 | 9.5 | GO:0005506 | iron ion binding(GO:0005506) |
| 0.1 | 7.7 | GO:0019900 | kinase binding(GO:0019900) |
| 0.1 | 7.4 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.1 | 5.7 | GO:0036459 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
| 0.1 | 5.7 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.6 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.5 | 1.4 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.3 | 1.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.4 | 1.1 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.4 | 1.1 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.6 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.5 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.0 | 0.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.4 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.8 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.4 | 1.4 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.3 | 1.3 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.3 | 1.2 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.2 | 1.2 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 1.1 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.3 | 0.8 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.2 | 0.6 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.1 | 0.5 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 0.4 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |