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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G16750
Z-value: 0.71
Transcription factors associated with AT4G16750
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G16750
|
AT4G16750 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT4G16750 | arTal_v1_Chr4_-_9421857_9421857 | 0.53 | 3.5e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 1.29 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 1.12 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr5_-_17166032_17166032 Show fit | 1.10 |
AT5G42800.1
|
dihydroflavonol 4-reductase |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 1.10 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 1.08 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_+_28177670_28177670 Show fit | 1.07 |
AT1G75040.1
|
pathogenesis-related protein 5 |
|
| arTal_v1_Chr5_-_17907638_17907638 Show fit | 1.03 |
AT5G44420.1
|
plant defensin 1.2 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 1.01 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr1_-_21235292_21235292 Show fit | 0.98 |
AT1G56650.1
|
production of anthocyanin pigment 1 |
|
| arTal_v1_Chr1_+_12917070_12917070 Show fit | 0.95 |
AT1G35230.1
|
arabinogalactan protein 5 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G16750
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 6.5 | GO:0009615 | response to virus(GO:0009615) |
| 0.1 | 5.9 | GO:0009625 | response to insect(GO:0009625) |
| 0.2 | 5.4 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.0 | 3.8 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
| 0.1 | 3.5 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.0 | 3.5 | GO:0010150 | leaf senescence(GO:0010150) |
| 0.0 | 3.5 | GO:0032446 | protein modification by small protein conjugation(GO:0032446) |
| 0.1 | 3.2 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 3.1 | GO:0002239 | response to oomycetes(GO:0002239) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 23.1 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 9.8 | GO:0005773 | vacuole(GO:0005773) |
| 0.0 | 9.6 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 7.2 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 4.3 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 4.0 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.0 | 3.3 | GO:0015934 | large ribosomal subunit(GO:0015934) |
| 0.0 | 3.1 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 2.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 2.7 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.9 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.0 | 5.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 4.8 | GO:0061659 | ubiquitin-like protein ligase activity(GO:0061659) |
| 0.0 | 4.3 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 4.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 4.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 3.2 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 2.7 | GO:0080043 | quercetin 3-O-glucosyltransferase activity(GO:0080043) |
| 0.2 | 2.6 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.2 | 2.3 | GO:0008195 | phosphatidate phosphatase activity(GO:0008195) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.4 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
| 0.1 | 0.4 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.3 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.0 | 0.3 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.1 | 0.2 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.1 | 0.2 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.0 | 0.2 | PID FGF PATHWAY | FGF signaling pathway |
| 0.0 | 0.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 0.8 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.2 | 0.6 | REACTOME NEGATIVE REGULATION OF FGFR SIGNALING | Genes involved in Negative regulation of FGFR signaling |
| 0.1 | 0.5 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.0 | 0.5 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 0.4 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.4 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.1 | 0.4 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.4 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |