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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G16150

Z-value: 2.76

Transcription factors associated with AT4G16150

Gene Symbol Gene ID Gene Info
AT4G16150 calmodulin-binding transcription activator 5

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT4G16150arTal_v1_Chr4_+_9148059_91480590.821.2e-07Click!

Activity profile of AT4G16150 motif

Sorted Z-values of AT4G16150 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_8392825 20.18 AT4G14630.1
germin-like protein 9
Chr4_+_15828228 18.38 AT4G32810.1
AT4G32810.2
carotenoid cleavage dioxygenase 8
Chr3_-_16923299 15.80 AT3G46080.1
C2H2-type zinc finger family protein
Chr3_-_1063103 14.88 AT3G04070.2
AT3G04070.1
NAC domain containing protein 47
Chr1_-_16789436 14.20 AT1G44130.1
Eukaryotic aspartyl protease family protein
Chr3_-_4269691 13.88 AT3G13229.1
kinesin-like protein (DUF868)
Chr1_-_27834207 13.23 AT1G74010.1
Calcium-dependent phosphotriesterase superfamily protein
Chr2_+_18289824 12.59 AT2G44240.1
NEP-interacting protein (DUF239)
Chr2_-_9538963 12.56 AT2G22470.1
arabinogalactan protein 2
Chr3_-_8119490 11.52 AT3G22910.1
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Chr3_+_1635194 11.30 AT3G05630.1
phospholipase D P2
Chr2_+_13677986 11.24 AT2G32210.3
AT2G32210.2
AT2G32210.1
cysteine-rich/transmembrane domain A-like protein
Chr1_-_28318362 10.63 AT1G75450.1
AT1G75450.2
cytokinin oxidase 5
Chr4_+_7304323 10.31 AT4G12290.2
Copper amine oxidase family protein
Chr4_+_7303985 10.24 AT4G12290.1
Copper amine oxidase family protein
Chr5_+_15501126 10.20 AT5G38710.1
AT5G38710.2
Methylenetetrahydrofolate reductase family protein
Chr2_+_17640546 9.75 AT2G42360.1
RING/U-box superfamily protein
Chr4_-_11971203 9.31 AT4G22780.1
ACT domain repeat 7
Chr4_-_11971357 9.26 AT4G22780.2
ACT domain repeat 7
Chr1_-_3756998 9.16 AT1G11210.1
cotton fiber protein, putative (DUF761)
Chr5_+_20090648 8.91 AT5G49520.1
WRKY DNA-binding protein 48
Chr5_-_18506382 8.87 AT5G45630.1
senescence regulator (Protein of unknown function, DUF584)
Chr4_+_13236253 8.81 AT4G26120.2
Ankyrin repeat family protein / BTB/POZ domain-containing protein
Chr2_+_9737583 8.77 AT2G22860.1
phytosulfokine 2 precursor
Chr2_+_17639001 8.77 AT2G42350.1
RING/U-box superfamily protein
Chr4_+_13236448 8.76 AT4G26120.1
Ankyrin repeat family protein / BTB/POZ domain-containing protein
Chr5_+_25721733 8.71 AT5G64310.1
arabinogalactan protein 1
Chr5_+_25322975 8.50 AT5G63130.2
AT5G63130.1
Octicosapeptide/Phox/Bem1p family protein
Chr2_-_7256831 8.35 AT2G16720.1
myb domain protein 7
Chr4_+_564760 8.30 AT4G01360.1
BPS1-like protein
Chr5_-_4933620 8.25 AT5G15190.2
AT5G15190.1
hypothetical protein
Chr3_+_20736508 8.21 AT3G55880.1
AT3G55880.3
AT3G55880.2
AT3G55880.4
Alpha/beta hydrolase related protein
Chr5_-_2529421 8.14 AT5G07920.1
AT5G07920.3
AT5G07920.2
diacylglycerol kinase1
Chr1_-_575085 8.13 AT1G02660.1
alpha/beta-Hydrolases superfamily protein
Chr3_+_390720 7.88 AT3G02150.1
AT3G02150.2
plastid transcription factor 1
Chr3_-_22915393 7.81 AT3G61890.1
homeobox 12
Chr4_-_17041131 7.71 AT4G36010.2
Pathogenesis-related thaumatin superfamily protein
Chr3_-_1039603 7.66 AT3G04010.1
O-Glycosyl hydrolases family 17 protein
Chr4_-_17041326 7.64 AT4G36010.1
Pathogenesis-related thaumatin superfamily protein
Chr5_-_5356353 7.57 AT5G16360.1
NC domain-containing protein-like protein
Chr3_-_20552215 7.50 AT3G55430.1
O-Glycosyl hydrolases family 17 protein
Chr4_-_16562931 7.45 AT4G34710.2
AT4G34710.1
arginine decarboxylase 2
Chr2_-_19089229 7.44 AT2G46500.2
AT2G46500.1
phosphoinositide 4-kinase gamma 4
Chr3_-_5762264 7.40 AT3G16860.1
COBRA-like protein 8 precursor
Chr1_+_26423874 7.36 AT1G70170.1
matrix metalloproteinase
Chr1_+_6622055 7.35 AT1G19180.3
AT1G19180.2
jasmonate-zim-domain protein 1
Chr2_+_13014530 7.31 AT2G30550.2
alpha/beta-Hydrolases superfamily protein
Chr1_+_486800 7.25 AT1G02400.1
AT1G02400.2
gibberellin 2-oxidase 6
Chr3_+_2003393 7.22 AT3G06490.1
myb domain protein 108
Chr2_+_13014859 7.16 AT2G30550.1
alpha/beta-Hydrolases superfamily protein
Chr1_-_7089606 7.16 AT1G20450.1
AT1G20450.2
Dehydrin family protein
Chr2_-_19089027 7.15 AT2G46500.3
phosphoinositide 4-kinase gamma 4
Chr2_-_1379130 7.12 AT2G04100.1
AT2G04100.2
MATE efflux family protein
Chr1_+_6621777 7.07 AT1G19180.1
jasmonate-zim-domain protein 1
Chr5_+_19135952 6.98 AT5G47120.1
BAX inhibitor 1
Chr5_+_5899046 6.98 AT5G17850.2
Sodium/calcium exchanger family protein
Chr1_-_8537780 6.97 AT1G24140.1
Matrixin family protein
Chr1_-_28587927 6.90 AT1G76180.1
AT1G76180.2
Dehydrin family protein
Chr1_+_3093644 6.86 AT1G09560.1
germin-like protein 5
Chr1_+_29815470 6.80 AT1G79270.1
AT1G79270.3
AT1G79270.2
AT1G79270.4
evolutionarily conserved C-terminal region 8
Chr5_+_5898852 6.71 AT5G17850.1
Sodium/calcium exchanger family protein
Chr1_+_28163344 6.70 AT1G75000.1
GNS1/SUR4 membrane protein family
Chr3_+_8641181 6.67 AT3G23920.1
beta-amylase 1
Chr3_+_20005616 6.58 AT3G54020.1
Inositol phosphorylceramide synthase 1
Chr4_-_10591546 6.44 AT4G19420.3
AT4G19420.2
AT4G19420.1
Pectinacetylesterase family protein
Chr3_+_6958509 6.41 AT3G19970.1
AT3G19970.2
AT3G19970.3
AT3G19970.5
AT3G19970.4
alpha/beta-Hydrolases superfamily protein
Chr1_-_3592580 6.39 AT1G10770.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr4_-_8283263 6.33 AT4G14370.1
AT4G14370.3
AT4G14370.2
Disease resistance protein (TIR-NBS-LRR class) family
Chr5_+_24102814 6.10 AT5G59820.1
C2H2-type zinc finger family protein
Chr4_+_17305758 6.07 AT4G36710.1
GRAS family transcription factor
Chr1_+_2927502 5.93 AT1G09070.1
soybean gene regulated by cold-2
Chr1_+_7337819 5.92 AT1G21000.2
PLATZ transcription factor family protein
Chr4_+_17592996 5.90 AT4G37420.1
glycosyltransferase family protein (DUF23)
Chr3_+_19534585 5.88 AT3G52710.1
hypothetical protein
Chr3_-_4535867 5.86 AT3G13790.2
AT3G13790.1
AT3G13790.3
AT3G13790.4
Glycosyl hydrolases family 32 protein
Chr2_-_14862178 5.84 AT2G35290.1
hypothetical protein
Chr1_+_7337605 5.72 AT1G21000.1
PLATZ transcription factor family protein
Chr1_-_16800307 5.67 AT1G44170.2
AT1G44170.1
aldehyde dehydrogenase 3H1
Chr4_+_10813183 5.62 AT4G19960.2
AT4G19960.3
K+ uptake permease 9
Chr4_-_10590700 5.62 AT4G19420.4
Pectinacetylesterase family protein
Chr2_+_12484658 5.61 AT2G29065.1
GRAS family transcription factor
Chr5_+_15619691 5.58 AT5G39024.1
AT5G39030.1
AT5G39030.2
hypothetical protein
Protein kinase superfamily protein
Chr1_-_5765798 5.53 AT1G16850.1
transmembrane protein
Chr1_-_5758583 5.53 AT1G16820.4
AT1G16820.1
vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein
Chr4_-_11988949 5.44 AT4G22820.2
AT4G22820.1
A20/AN1-like zinc finger family protein
Chr1_-_16798675 5.40 AT1G44170.3
aldehyde dehydrogenase 3H1
Chr1_-_26415258 5.39 AT1G70140.1
formin 8
Chr4_+_10814655 5.32 AT4G19960.4
K+ uptake permease 9
Chr1_-_2621545 5.27 AT1G08315.1
ARM repeat superfamily protein
Chr2_-_9210231 5.25 AT2G21500.1
AT2G21500.2
RING/U-box superfamily protein
Chr1_+_267993 5.20 AT1G01720.1
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr4_-_18459257 5.14 AT4G39780.1
Integrase-type DNA-binding superfamily protein
Chr2_-_19350650 5.13 AT2G47130.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_10813548 5.09 AT4G19960.1
K+ uptake permease 9
Chr3_-_4907954 5.08 AT3G14590.4
AT3G14590.3
AT3G14590.1
AT3G14590.2
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr4_-_7786161 5.07 AT4G13395.1
ROTUNDIFOLIA like 12
Chr5_+_16579936 5.00 AT5G41410.1
POX (plant homeobox) family protein
Chr5_+_2293114 5.00 AT5G07290.1
MEI2-like 4
Chr5_-_14920025 4.92 AT5G37550.1
hypothetical protein
Chr4_+_10498748 4.90 AT4G19200.1
proline-rich family protein
Chr3_+_10067529 4.88 AT3G27260.3
AT3G27260.4
AT3G27260.2
AT3G27260.1
global transcription factor group E8
Chr4_-_9663794 4.85 AT4G17230.2
AT4G17230.1
SCARECROW-like 13
Chr5_-_23700226 4.84 AT5G58650.1
plant peptide containing sulfated tyrosine 1
Chr1_-_24812661 4.76 AT1G66500.1
Pre-mRNA cleavage complex II
Chr1_-_16838562 4.75 AT1G44350.1
IAA-amino acid hydrolase ILR1-like 6
Chr2_-_9767 4.69 AT2G01023.1
hypothetical protein
Chr3_-_22606797 4.68 AT3G61070.1
AT3G61070.2
AT3G61070.3
peroxin 11E
Chr3_-_22244061 4.68 AT3G60180.2
AT3G60180.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr2_+_15876717 4.64 AT2G37940.2
AT2G37940.1
Inositol phosphorylceramide synthase 2
Chr2_-_16287967 4.62 AT2G39000.3
AT2G39000.2
AT2G39000.4
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr3_-_23299126 4.61 AT3G63052.1
hypothetical protein
Chr5_-_4423095 4.60 AT5G13700.1
polyamine oxidase 1
Chr5_+_2748133 4.53 AT5G08500.1
AT5G08500.2
Transmembrane CLPTM1 family protein
Chr3_-_12451556 4.45 AT3G30775.2
AT3G30775.1
Methylenetetrahydrofolate reductase family protein
Chr5_-_8419076 4.44 AT5G24590.2
TCV-interacting protein
Chr2_-_16288262 4.37 AT2G39000.1
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr4_+_16451876 4.35 AT4G34410.1
redox responsive transcription factor 1
Chr3_+_19028106 4.30 AT3G51250.1
AT3G51250.2
Senescence/dehydration-associated protein-like protein
Chr3_-_7263384 4.28 AT3G20770.1
Ethylene insensitive 3 family protein
Chr1_+_29430052 4.28 AT1G78230.1
Outer arm dynein light chain 1 protein
Chr2_+_3618058 4.26 AT2G08986.1
hypothetical protein
Chr3_-_22651598 4.24 AT3G61190.2
AT3G61190.1
BON association protein 1
Chr4_-_2589184 4.18 AT4G05050.3
AT4G05050.4
AT4G05050.2
AT4G05050.1
ubiquitin 11
Chr2_+_19629474 4.15 AT2G47970.2
Nuclear pore localization protein NPL4
Chr2_+_19629217 4.14 AT2G47970.1
Nuclear pore localization protein NPL4
Chr2_+_10244745 4.06 AT2G24100.1
ATP-dependent DNA helicase
Chr2_+_15257418 4.04 AT2G36380.1
pleiotropic drug resistance 6
Chr4_-_17050608 4.04 AT4G36040.1
Chaperone DnaJ-domain superfamily protein
Chr5_+_17522486 4.03 AT5G43620.1
Pre-mRNA cleavage complex II
Chr2_-_7757875 4.03 AT2G17840.2
AT2G17840.1
Senescence/dehydration-associated protein-like protein
Chr3_+_2476306 4.02 AT3G07760.3
AT3G07760.1
AT3G07760.4
AT3G07760.2
AT3G07760.5
AT3G07760.6
AT3G07760.9
AT3G07760.7
AT3G07760.8
Sterile alpha motif (SAM) domain-containing protein
Chr2_+_8125128 3.97 AT2G18750.1
AT2G18750.3
AT2G18750.2
Calmodulin-binding protein
Chr4_+_16260481 3.97 AT4G33920.2
AT4G33920.1
AT4G33920.3
Protein phosphatase 2C family protein
Chr3_-_4535579 3.96 AT3G13790.5
Glycosyl hydrolases family 32 protein
Chr5_-_18743077 3.95 AT5G46230.1
hypothetical protein (Protein of unknown function, DUF538)
Chr5_+_21016841 3.86 AT5G51740.2
AT5G51740.3
AT5G51740.1
Peptidase family M48 family protein
Chr1_-_237817 3.85 AT1G01650.2
AT1G01650.4
AT1G01650.3
AT1G01650.1
SIGNAL PEPTIDE PEPTIDASE-LIKE 4
Chr2_-_8533779 3.81 AT2G19800.1
myo-inositol oxygenase 2
Chr5_-_18383693 3.77 AT5G45350.2
AT5G45350.4
AT5G45350.3
AT5G45350.5
AT5G45350.7
proline-rich family protein
Chr2_-_8370675 3.73 AT2G19310.1
HSP20-like chaperones superfamily protein
Chr4_+_8719022 3.73 AT4G15280.2
AT4G15280.1
UDP-glucosyl transferase 71B5
Chr1_-_67625 3.71 AT1G01140.2
AT1G01140.3
AT1G01140.1
CBL-interacting protein kinase 9
Chr5_+_3606385 3.61 AT5G11310.1
Pentatricopeptide repeat (PPR) superfamily protein
Chr2_+_426052 3.61 AT2G01920.1
ENTH/VHS/GAT family protein
Chr5_-_18383492 3.59 AT5G45350.6
proline-rich family protein
Chr4_-_16740601 3.57 AT4G35180.2
AT4G35180.1
LYS/HIS transporter 7
Chr1_+_108946 3.55 AT1G01260.3
AT1G01260.1
AT1G01260.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_18384069 3.51 AT5G45350.1
proline-rich family protein
Chr2_+_7673145 3.49 AT2G17660.1
RPM1-interacting protein 4 (RIN4) family protein
Chr5_-_3956185 3.48 AT5G12230.1
mediator of RNA polymerase II transcription subunit 19a-like protein
Chr1_+_29452555 3.47 AT1G78280.1
transferases, transferring glycosyl groups
Chr1_-_130570 3.44 AT1G01320.1
AT1G01320.3
AT1G01320.2
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_+_3186266 3.42 AT3G10300.3
AT3G10300.2
AT3G10300.1
AT3G10300.5
AT3G10300.4
Calcium-binding EF-hand family protein
Chr5_+_18228768 3.40 AT5G45110.1
AT5G45110.2
NPR1-like protein 3
Chr3_+_20296416 3.40 AT3G54810.1
Plant-specific GATA-type zinc finger transcription factor family protein
Chr4_-_8524217 3.39 AT4G14900.1
FRIGIDA-like protein
Chr3_+_731862 3.37 AT3G03170.1
hypothetical protein
Chr1_-_172948 3.36 AT1G01470.1
Late embryogenesis abundant protein
Chr4_-_433938 3.32 AT4G01000.2
AT4G01000.1
Ubiquitin-like superfamily protein
Chr3_+_20296130 3.30 AT3G54810.2
Plant-specific GATA-type zinc finger transcription factor family protein
Chr2_-_15370829 3.28 AT2G36680.4
AT2G36680.2
Modifier of rudimentary (Mod(r)) protein
Chr5_+_25233881 3.28 AT5G62865.1
hypothetical protein
Chr2_-_15371033 3.24 AT2G36680.1
AT2G36680.3
Modifier of rudimentary (Mod(r)) protein
Chr4_-_17687105 3.19 AT4G37640.1
calcium ATPase 2
Chr1_-_19122038 3.16 AT1G51560.1
Pyridoxamine 5'-phosphate oxidase family protein
Chr1_+_26618099 3.13 AT1G70590.1
F-box family protein
Chr2_+_11669629 3.12 AT2G27260.1
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr5_-_17591737 3.06 AT5G43780.1
Pseudouridine synthase/archaeosine transglycosylase-like family protein
Chr3_+_6296677 3.05 AT3G18350.2
AT3G18350.3
AT3G18350.1
heat-inducible transcription repressor (DUF639)
Chr3_+_5426987 3.05 AT3G15990.1
sulfate transporter 3;4
Chr1_+_17906871 2.98 AT1G48440.1
B-cell receptor-associated 31-like protein
Chr2_+_9695832 2.96 AT2G22790.1
hypothetical protein
Chr2_-_15469964 2.94 AT2G36850.1
glucan synthase-like 8
Chr2_+_10024150 2.90 AT2G23540.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_+_28891976 2.87 AT1G76920.1
F-box family protein
Chr5_+_8037798 2.84 AT5G23850.1
O-glucosyltransferase rumi-like protein (DUF821)
Chr4_+_14579563 2.82 AT4G29780.1
nuclease
Chr2_+_15192480 2.82 AT2G36220.1
hypothetical protein
Chr3_-_18364956 2.81 AT3G49530.2
AT3G49530.1
NAC domain containing protein 62
Chr3_+_618398 2.79 AT3G02840.1
ARM repeat superfamily protein
Chr4_-_11470569 2.74 AT4G21560.1
AT4G21560.3
vacuolar protein sorting-associated protein-like protein
Chr2_+_17140183 2.72 AT2G41110.1
AT2G41110.2
calmodulin 2
Chr4_+_15656681 2.72 AT4G32440.3
AT4G32440.1
AT4G32440.2
Plant Tudor-like RNA-binding protein
Chr5_+_23324643 2.71 AT5G57610.1
kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein
Chr1_-_7897591 2.70 AT1G22360.2
UDP-glucosyl transferase 85A2
Chr1_-_7897761 2.68 AT1G22360.1
UDP-glucosyl transferase 85A2
Chr4_-_6704638 2.60 AT4G10925.1
AT4G10925.4
AT4G10925.2
AT4G10925.3
AT4G10925.5
Nuclear transport factor 2 (NTF2) family protein
Chr1_-_1658806 2.57 AT1G05570.4
callose synthase 1
Chr4_-_17139777 2.57 AT4G36220.1
ferulic acid 5-hydroxylase 1
Chr1_-_18497187 2.57 AT1G49950.3
AT1G49950.1
AT1G49950.2
telomere repeat binding factor 1
Chr2_+_801527 2.56 AT2G02810.1
UDP-galactose transporter 1
Chr1_-_22057268 2.55 AT1G59910.1
Actin-binding FH2 (formin homology 2) family protein
Chr3_+_22514027 2.55 AT3G60930.2

Chr3_+_649814 2.55 AT3G02910.1
AIG2-like (avirulence induced gene) family protein
Chr1_+_22011305 2.55 AT1G59820.1
aminophospholipid ATPase 3
Chr3_+_3186038 2.55 AT3G10300.6
Calcium-binding EF-hand family protein
Chr5_+_3532402 2.54 AT5G11100.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr4_+_10103866 2.53 AT4G18280.1
glycine-rich cell wall protein-like protein
Chr1_-_1659079 2.53 AT1G05570.3
callose synthase 1
Chr1_-_1659437 2.51 AT1G05570.2
callose synthase 1

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G16150

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
6.1 18.4 GO:0016110 tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124)
5.0 14.9 GO:0045764 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
4.8 14.4 GO:0010446 response to alkaline pH(GO:0010446)
2.9 8.8 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
2.5 7.4 GO:0044259 collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259)
2.3 7.0 GO:0006984 ER-nucleus signaling pathway(GO:0006984)
1.9 11.3 GO:0006654 phosphatidic acid biosynthetic process(GO:0006654)
1.9 7.4 GO:0006527 arginine catabolic process(GO:0006527)
1.8 10.6 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
1.7 8.4 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
1.7 6.7 GO:0010480 microsporocyte differentiation(GO:0010480)
1.6 4.7 GO:0046704 CDP metabolic process(GO:0046704) CDP biosynthetic process(GO:0046705)
1.1 4.3 GO:2000082 regulation of L-ascorbic acid biosynthetic process(GO:2000082)
1.0 11.3 GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043162)
1.0 8.1 GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205)
0.9 4.6 GO:0046208 spermine catabolic process(GO:0046208)
0.9 7.3 GO:0045487 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.9 2.6 GO:0098532 histone H3-K27 trimethylation(GO:0098532) regulation of histone H3-K27 trimethylation(GO:1902464)
0.8 7.9 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.8 2.4 GO:0042787 protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0042787) regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:2000058)
0.8 6.1 GO:0009643 photosynthetic acclimation(GO:0009643)
0.8 3.8 GO:0019310 inositol catabolic process(GO:0019310)
0.7 11.2 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.7 4.4 GO:0002230 positive regulation of defense response to virus by host(GO:0002230)
0.7 13.0 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.7 2.0 GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.7 2.0 GO:0071217 response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.6 2.5 GO:0045332 phospholipid translocation(GO:0045332)
0.6 1.9 GO:0048451 petal formation(GO:0048451)
0.6 2.4 GO:0010618 aerenchyma formation(GO:0010618)
0.6 8.2 GO:0009970 cellular response to sulfate starvation(GO:0009970)
0.6 4.7 GO:0044375 regulation of peroxisome size(GO:0044375)
0.6 5.0 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.6 0.6 GO:0046209 nitric oxide metabolic process(GO:0046209)
0.5 3.1 GO:0070814 hydrogen sulfide biosynthetic process(GO:0070814)
0.5 12.5 GO:0046834 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.5 4.0 GO:0080142 regulation of salicylic acid biosynthetic process(GO:0080142)
0.5 6.9 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.5 21.0 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.5 1.9 GO:0031468 nuclear envelope reassembly(GO:0031468)
0.4 1.8 GO:0046786 viral replication complex formation and maintenance(GO:0046786)
0.4 4.9 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.4 2.6 GO:0015785 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.4 1.7 GO:0035264 multicellular organism growth(GO:0035264)
0.4 5.0 GO:0051365 cellular response to potassium ion starvation(GO:0051365)
0.4 4.5 GO:0006560 proline metabolic process(GO:0006560)
0.4 7.4 GO:0010215 cellulose microfibril organization(GO:0010215)
0.4 3.8 GO:0033619 membrane protein proteolysis(GO:0033619)
0.4 1.9 GO:0010390 histone monoubiquitination(GO:0010390)
0.4 2.3 GO:0043406 activation of MAPK activity(GO:0000187) positive regulation of MAP kinase activity(GO:0043406)
0.4 6.8 GO:0061157 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.4 9.8 GO:0009269 response to desiccation(GO:0009269)
0.4 4.7 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.4 2.8 GO:0009061 anaerobic respiration(GO:0009061)
0.3 2.0 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.3 68.9 GO:0071456 cellular response to hypoxia(GO:0071456)
0.3 13.0 GO:0071804 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.3 1.1 GO:0009660 endosome organization(GO:0007032) amyloplast organization(GO:0009660)
0.3 1.4 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.3 1.1 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.3 1.9 GO:0010155 regulation of proton transport(GO:0010155)
0.3 4.4 GO:0006521 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.2 1.2 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.2 1.4 GO:0019405 glycerol-3-phosphate metabolic process(GO:0006072) alditol catabolic process(GO:0019405) glycerol catabolic process(GO:0019563)
0.2 2.3 GO:0060321 acceptance of pollen(GO:0060321)
0.2 3.4 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.2 0.7 GO:0055122 response to very low light intensity stimulus(GO:0055122)
0.2 9.5 GO:0009631 cold acclimation(GO:0009631)
0.2 13.6 GO:0008283 cell proliferation(GO:0008283)
0.1 2.8 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.1 3.2 GO:0010037 response to carbon dioxide(GO:0010037)
0.1 0.4 GO:0031120 snRNA pseudouridine synthesis(GO:0031120)
0.1 0.8 GO:1901001 negative regulation of response to salt stress(GO:1901001)
0.1 1.3 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.1 1.8 GO:0000165 MAPK cascade(GO:0000165)
0.1 1.4 GO:0051865 protein autoubiquitination(GO:0051865)
0.1 13.5 GO:0010200 response to chitin(GO:0010200)
0.1 2.0 GO:0033753 ribosomal subunit export from nucleus(GO:0000054) ribosome localization(GO:0033750) establishment of ribosome localization(GO:0033753) rRNA-containing ribonucleoprotein complex export from nucleus(GO:0071428)
0.1 2.7 GO:0046470 phosphatidylcholine metabolic process(GO:0046470)
0.1 1.7 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.1 2.6 GO:0043069 negative regulation of programmed cell death(GO:0043069)
0.1 1.1 GO:0046337 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.1 0.4 GO:0070509 calcium ion import(GO:0070509)
0.1 7.8 GO:0009615 response to virus(GO:0009615)
0.1 5.8 GO:0048481 plant ovule development(GO:0048481)
0.1 3.0 GO:0030838 positive regulation of actin filament polymerization(GO:0030838) actin nucleation(GO:0045010)
0.1 1.6 GO:0032981 mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031)
0.1 1.6 GO:0050821 protein stabilization(GO:0050821)
0.1 0.9 GO:0000338 protein deneddylation(GO:0000338)
0.1 0.2 GO:1901537 positive regulation of DNA demethylation(GO:1901537)
0.1 4.0 GO:0009644 response to high light intensity(GO:0009644)
0.1 5.2 GO:0019722 calcium-mediated signaling(GO:0019722)
0.1 0.9 GO:1902074 response to salt(GO:1902074)
0.1 2.6 GO:0006334 nucleosome assembly(GO:0006334)
0.1 10.3 GO:0009611 response to wounding(GO:0009611)
0.1 7.6 GO:0009860 pollen tube growth(GO:0009860)
0.1 2.4 GO:0019762 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.1 1.3 GO:0050826 response to freezing(GO:0050826)
0.0 0.2 GO:0046864 isoprenoid transport(GO:0046864) terpenoid transport(GO:0046865)
0.0 1.1 GO:0006606 protein import into nucleus(GO:0006606) protein targeting to nucleus(GO:0044744)
0.0 1.0 GO:0043067 regulation of programmed cell death(GO:0043067)
0.0 1.2 GO:0002239 response to oomycetes(GO:0002239)
0.0 4.8 GO:0009845 seed germination(GO:0009845)
0.0 1.5 GO:0006897 endocytosis(GO:0006897)
0.0 0.3 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.6 GO:0015986 ATP biosynthetic process(GO:0006754) energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.0 0.6 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.0 5.4 GO:0009651 response to salt stress(GO:0009651)
0.0 2.9 GO:0045944 positive regulation of transcription from RNA polymerase II promoter(GO:0045944)
0.0 2.6 GO:0048831 regulation of shoot system development(GO:0048831)
0.0 0.7 GO:0010150 leaf senescence(GO:0010150) organ senescence(GO:0010260)
0.0 7.4 GO:0016567 protein ubiquitination(GO:0016567)
0.0 4.1 GO:0006979 response to oxidative stress(GO:0006979)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.3 11.3 GO:0000813 ESCRT I complex(GO:0000813)
0.7 16.1 GO:0031012 extracellular matrix(GO:0031012)
0.7 8.8 GO:0005849 mRNA cleavage factor complex(GO:0005849)
0.7 13.0 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.5 5.9 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.4 3.8 GO:0098553 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.4 13.8 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.3 4.7 GO:0005779 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.3 1.8 GO:0012510 trans-Golgi network transport vesicle membrane(GO:0012510)
0.2 1.5 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.2 2.3 GO:0070062 extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561)
0.2 0.7 GO:0031932 TORC2 complex(GO:0031932)
0.2 2.6 GO:0000786 nucleosome(GO:0000786)
0.2 1.1 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.1 4.6 GO:0005764 lysosome(GO:0005764)
0.1 2.0 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.1 17.9 GO:0000325 plant-type vacuole(GO:0000325)
0.1 22.3 GO:0009505 plant-type cell wall(GO:0009505)
0.1 15.5 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.1 0.6 GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276)
0.1 11.4 GO:0031225 anchored component of membrane(GO:0031225)
0.1 1.1 GO:0031902 late endosome membrane(GO:0031902)
0.1 0.4 GO:0031429 box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588)
0.1 0.9 GO:0008180 COP9 signalosome(GO:0008180)
0.1 2.0 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.1 3.5 GO:0016592 mediator complex(GO:0016592)
0.1 5.9 GO:0005635 nuclear envelope(GO:0005635)
0.0 16.8 GO:0009570 chloroplast stroma(GO:0009570)
0.0 35.4 GO:0009506 cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044)
0.0 1.6 GO:0045271 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.0 2.3 GO:0005874 microtubule(GO:0005874)
0.0 4.1 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 0.5 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.9 GO:0044421 extracellular space(GO:0005615) extracellular region part(GO:0044421)
0.0 34.3 GO:0005829 cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
3.7 11.2 GO:0045140 inositol phosphoceramide synthase activity(GO:0045140)
2.4 7.3 GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
2.2 11.1 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
2.0 18.4 GO:0010436 carotenoid dioxygenase activity(GO:0010436)
1.6 4.8 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
1.5 4.6 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
1.5 10.6 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
1.2 4.7 GO:0033862 UMP kinase activity(GO:0033862)
1.1 14.6 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
1.0 8.1 GO:0004143 diacylglycerol kinase activity(GO:0004143)
0.9 2.6 GO:0080132 fatty acid alpha-hydroxylase activity(GO:0080132)
0.8 3.8 GO:0050113 inositol oxygenase activity(GO:0050113)
0.7 13.2 GO:0016844 strictosidine synthase activity(GO:0016844)
0.7 3.4 GO:0016629 12-oxophytodienoate reductase activity(GO:0016629)
0.7 13.0 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.7 4.7 GO:0010178 IAA-amino acid conjugate hydrolase activity(GO:0010178)
0.7 11.3 GO:0004630 phospholipase D activity(GO:0004630) N-acylphosphatidylethanolamine-specific phospholipase D activity(GO:0070290)
0.6 3.9 GO:0004142 diacylglycerol cholinephosphotransferase activity(GO:0004142)
0.6 7.1 GO:0016161 beta-amylase activity(GO:0016161)
0.6 3.1 GO:0004781 sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.6 28.8 GO:0030145 manganese ion binding(GO:0030145)
0.6 8.8 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.5 18.6 GO:0016597 amino acid binding(GO:0016597)
0.5 2.6 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.5 2.6 GO:0005460 UDP-glucose transmembrane transporter activity(GO:0005460)
0.5 9.1 GO:0004564 beta-fructofuranosidase activity(GO:0004564)
0.4 3.8 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.4 2.0 GO:0043024 ribosomal small subunit binding(GO:0043024)
0.4 1.2 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.3 1.9 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.3 1.4 GO:0016843 amine-lyase activity(GO:0016843)
0.3 5.4 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.3 1.8 GO:0015391 nucleobase:cation symporter activity(GO:0015391)
0.2 4.5 GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors(GO:0016645)
0.2 12.5 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.2 0.6 GO:0015173 aromatic amino acid transmembrane transporter activity(GO:0015173)
0.2 1.6 GO:0048038 quinone binding(GO:0048038)
0.2 2.4 GO:0003950 NAD+ ADP-ribosyltransferase activity(GO:0003950)
0.2 1.3 GO:0030332 cyclin binding(GO:0030332)
0.2 13.3 GO:0015079 potassium ion transmembrane transporter activity(GO:0015079)
0.2 2.3 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.2 7.4 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.2 7.8 GO:0035091 phosphatidylinositol binding(GO:0035091)
0.2 1.8 GO:0004032 alditol:NADP+ 1-oxidoreductase activity(GO:0004032)
0.1 1.2 GO:0052622 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.1 1.8 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.1 3.2 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.1 2.5 GO:0005548 phospholipid transporter activity(GO:0005548)
0.1 5.1 GO:0033293 monocarboxylic acid binding(GO:0033293)
0.1 7.4 GO:0016831 carboxy-lyase activity(GO:0016831)
0.1 4.3 GO:0008134 transcription factor binding(GO:0008134)
0.1 0.7 GO:0016004 phospholipase activator activity(GO:0016004) lipase activator activity(GO:0060229)
0.1 4.4 GO:0003713 transcription coactivator activity(GO:0003713)
0.1 0.3 GO:0080045 quercetin 3'-O-glucosyltransferase activity(GO:0080045)
0.1 4.2 GO:0005543 phospholipid binding(GO:0005543)
0.1 11.3 GO:0003779 actin binding(GO:0003779)
0.1 1.5 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.1 3.7 GO:0080043 quercetin 3-O-glucosyltransferase activity(GO:0080043)
0.1 17.2 GO:0005509 calcium ion binding(GO:0005509)
0.1 4.6 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.1 1.1 GO:0008536 Ran GTPase binding(GO:0008536)
0.1 2.7 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.1 4.3 GO:0019901 protein kinase binding(GO:0019901)
0.1 4.2 GO:0042393 histone binding(GO:0042393)
0.0 2.4 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.0 0.7 GO:0051879 Hsp90 protein binding(GO:0051879)
0.0 2.0 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 5.7 GO:0061630 ubiquitin protein ligase activity(GO:0061630)
0.0 2.0 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 10.2 GO:0042802 identical protein binding(GO:0042802)
0.0 3.6 GO:0015171 amino acid transmembrane transporter activity(GO:0015171)
0.0 2.1 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.0 58.0 GO:0003700 nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700)
0.0 1.0 GO:0051087 chaperone binding(GO:0051087)
0.0 7.1 GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds(GO:0004553)
0.0 0.3 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 2.9 GO:0043531 ADP binding(GO:0043531)
0.0 0.5 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 PID ARF 3PATHWAY Arf1 pathway
0.2 1.8 PID CMYB PATHWAY C-MYB transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.7 REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA Genes involved in Processing of Capped Intron-Containing Pre-mRNA
0.2 0.7 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.2 1.7 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines