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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G16150
Z-value: 2.76
Transcription factors associated with AT4G16150
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G16150
|
AT4G16150 | calmodulin-binding transcription activator 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT4G16150 | arTal_v1_Chr4_+_9148059_9148059 | 0.82 | 1.2e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 20.18 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 18.38 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr3_-_16923299_16923299 Show fit | 15.80 |
AT3G46080.1
|
C2H2-type zinc finger family protein |
|
| arTal_v1_Chr3_-_1063103_1063234 Show fit | 14.88 |
AT3G04070.2
AT3G04070.1 |
NAC domain containing protein 47 |
|
| arTal_v1_Chr1_-_16789436_16789436 Show fit | 14.20 |
AT1G44130.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr3_-_4269691_4269691 Show fit | 13.88 |
AT3G13229.1
|
kinesin-like protein (DUF868) |
|
| arTal_v1_Chr1_-_27834207_27834207 Show fit | 13.23 |
AT1G74010.1
|
Calcium-dependent phosphotriesterase superfamily protein |
|
| arTal_v1_Chr2_+_18289824_18289824 Show fit | 12.59 |
AT2G44240.1
|
NEP-interacting protein (DUF239) |
|
| arTal_v1_Chr2_-_9538963_9538963 Show fit | 12.56 |
AT2G22470.1
|
arabinogalactan protein 2 |
|
| arTal_v1_Chr3_-_8119490_8119490 Show fit | 11.52 |
AT3G22910.1
|
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G16150
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 68.9 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.5 | 21.0 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 6.1 | 18.4 | GO:0016110 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
| 5.0 | 14.9 | GO:0045764 | positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764) |
| 4.8 | 14.4 | GO:0010446 | response to alkaline pH(GO:0010446) |
| 0.2 | 13.6 | GO:0008283 | cell proliferation(GO:0008283) |
| 0.1 | 13.5 | GO:0010200 | response to chitin(GO:0010200) |
| 0.7 | 13.0 | GO:0006074 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 0.3 | 13.0 | GO:0071804 | cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805) |
| 0.5 | 12.5 | GO:0046834 | lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 35.4 | GO:0009506 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 34.3 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 22.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 17.9 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 16.8 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.7 | 16.1 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.1 | 15.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.4 | 13.8 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.7 | 13.0 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.1 | 11.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 58.0 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.6 | 28.8 | GO:0030145 | manganese ion binding(GO:0030145) |
| 0.5 | 18.6 | GO:0016597 | amino acid binding(GO:0016597) |
| 2.0 | 18.4 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.1 | 17.2 | GO:0005509 | calcium ion binding(GO:0005509) |
| 1.1 | 14.6 | GO:0004430 | 1-phosphatidylinositol 4-kinase activity(GO:0004430) |
| 0.2 | 13.3 | GO:0015079 | potassium ion transmembrane transporter activity(GO:0015079) |
| 0.7 | 13.2 | GO:0016844 | strictosidine synthase activity(GO:0016844) |
| 0.7 | 13.0 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
| 0.2 | 12.5 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 0.7 | PID ARF 3PATHWAY | Arf1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.7 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
| 0.2 | 1.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.7 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |