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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G14770
Z-value: 2.32
Transcription factors associated with AT4G14770
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G14770
|
AT4G14770 | TESMIN/TSO1-like CXC 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TCX2 | arTal_v1_Chr4_-_8484976_8484976 | 0.78 | 1.3e-06 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 12.15 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 8.58 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 8.08 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr3_+_5681380_5681380 Show fit | 7.99 |
AT3G16670.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 7.70 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 7.31 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 6.81 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 6.73 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 6.55 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr1_+_10375754_10375754 Show fit | 6.32 |
AT1G29670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G14770
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 23.8 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.9 | 17.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 17.0 | GO:0007017 | microtubule-based process(GO:0007017) |
| 1.1 | 12.3 | GO:0010196 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.2 | 12.1 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.7 | 11.5 | GO:0046501 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
| 1.9 | 11.2 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.2 | 11.0 | GO:0019762 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.1 | 10.0 | GO:0009741 | response to brassinosteroid(GO:0009741) |
| 0.2 | 9.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 114.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 90.2 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 53.6 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.2 | 37.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 27.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 2.5 | 22.7 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 1.0 | 13.0 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.2 | 10.2 | GO:0005874 | microtubule(GO:0005874) |
| 0.1 | 10.2 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.4 | 10.1 | GO:0005871 | kinesin complex(GO:0005871) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 25.1 | GO:0046983 | protein dimerization activity(GO:0046983) |
| 0.1 | 16.1 | GO:0004857 | enzyme inhibitor activity(GO:0004857) |
| 0.3 | 15.4 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.4 | 13.9 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 3.8 | 11.5 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.4 | 11.3 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.2 | 11.3 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 9.0 | GO:0030246 | carbohydrate binding(GO:0030246) |
| 1.1 | 8.6 | GO:0019137 | thioglucosidase activity(GO:0019137) |
| 0.3 | 8.6 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 3.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.8 | 2.5 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.4 | 2.4 | PID ATM PATHWAY | ATM pathway |
| 0.4 | 1.8 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.2 | 1.8 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.5 | 1.4 | PID MYC PATHWAY | C-MYC pathway |
| 0.2 | 0.7 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.2 | 0.6 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
| 0.1 | 0.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.2 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 4.1 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.7 | 3.5 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 1.1 | 3.2 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.6 | 2.5 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.5 | 1.9 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.5 | 1.6 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.2 | 1.5 | REACTOME MEMBRANE TRAFFICKING | Genes involved in Membrane Trafficking |
| 0.2 | 1.4 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.4 | 1.3 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 0.9 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |