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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G11660
Z-value: 1.03
Transcription factors associated with AT4G11660
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G11660
|
AT4G11660 | winged-helix DNA-binding transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT-HSFB2B | arTal_v1_Chr4_+_7042354_7042354 | 0.95 | 2.1e-14 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_11980003_11980003 Show fit | 4.61 |
AT2G28110.1
|
Exostosin family protein |
|
| arTal_v1_Chr1_-_4571229_4571229 Show fit | 4.45 |
AT1G13340.1
|
Regulator of Vps4 activity in the MVB pathway protein |
|
| arTal_v1_Chr3_-_23150606_23150606 Show fit | 3.94 |
AT3G62590.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr3_+_1635194_1635194 Show fit | 3.78 |
AT3G05630.1
|
phospholipase D P2 |
|
| arTal_v1_Chr2_+_12871984_12872134 Show fit | 3.77 |
AT2G30140.1
AT2G30140.2 |
UDP-Glycosyltransferase superfamily protein |
|
| arTal_v1_Chr5_-_763322_763322 Show fit | 3.47 |
AT5G03210.1
|
E3 ubiquitin-protein ligase |
|
| arTal_v1_Chr5_-_552827_552827 Show fit | 3.45 |
AT5G02490.1
|
Heat shock protein 70 (Hsp 70) family protein |
|
| arTal_v1_Chr1_-_27466348_27466348 Show fit | 3.19 |
AT1G73010.1
|
inorganic pyrophosphatase 1 |
|
| arTal_v1_Chr5_-_763480_763480 Show fit | 3.18 |
AT5G03210.2
|
E3 ubiquitin-protein ligase |
|
| arTal_v1_Chr5_-_2961382_2961382 Show fit | 3.17 |
AT5G09530.1
|
hydroxyproline-rich glycoprotein family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G11660
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.5 | GO:0009615 | response to virus(GO:0009615) |
| 0.2 | 7.6 | GO:0042026 | protein refolding(GO:0042026) |
| 0.0 | 6.4 | GO:0009909 | regulation of flower development(GO:0009909) |
| 0.9 | 6.0 | GO:0090059 | protoxylem development(GO:0090059) |
| 0.1 | 4.2 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.1 | 4.0 | GO:0009561 | megagametogenesis(GO:0009561) |
| 0.2 | 3.9 | GO:0051262 | protein tetramerization(GO:0051262) |
| 0.6 | 3.8 | GO:0006654 | phosphatidic acid biosynthetic process(GO:0006654) |
| 0.1 | 3.6 | GO:0009395 | phospholipid catabolic process(GO:0009395) |
| 0.3 | 3.5 | GO:0010417 | glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 17.1 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 11.7 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.0 | 8.5 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 7.0 | GO:0033648 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 5.8 | GO:0005773 | vacuole(GO:0005773) |
| 0.1 | 4.4 | GO:0005798 | Golgi-associated vesicle(GO:0005798) |
| 0.5 | 3.7 | GO:0016363 | nuclear matrix(GO:0016363) |
| 0.0 | 3.7 | GO:0005681 | spliceosomal complex(GO:0005681) |
| 0.0 | 3.4 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.2 | 2.2 | GO:0035861 | site of double-strand break(GO:0035861) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 6.0 | GO:0052596 | tryptamine:oxygen oxidoreductase (deaminating) activity(GO:0052593) aminoacetone:oxygen oxidoreductase(deaminating) activity(GO:0052594) aliphatic-amine oxidase activity(GO:0052595) phenethylamine:oxygen oxidoreductase (deaminating) activity(GO:0052596) |
| 0.0 | 5.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 5.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 4.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 4.4 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.5 | 4.2 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
| 0.2 | 4.2 | GO:0043295 | glutathione binding(GO:0043295) oligopeptide binding(GO:1900750) |
| 0.2 | 4.0 | GO:0051787 | misfolded protein binding(GO:0051787) |
| 0.2 | 3.9 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
| 0.2 | 3.8 | GO:0070290 | phospholipase D activity(GO:0004630) N-acylphosphatidylethanolamine-specific phospholipase D activity(GO:0070290) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.3 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.4 | 2.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.2 | 0.7 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.2 | 0.6 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |