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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G11660

Z-value: 1.03

Transcription factors associated with AT4G11660

Gene Symbol Gene ID Gene Info
AT4G11660 winged-helix DNA-binding transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT-HSFB2BarTal_v1_Chr4_+_7042354_70423540.952.1e-14Click!

Activity profile of AT4G11660 motif

Sorted Z-values of AT4G11660 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_11980003 4.61 AT2G28110.1
Exostosin family protein
Chr1_-_4571229 4.45 AT1G13340.1
Regulator of Vps4 activity in the MVB pathway protein
Chr3_-_23150606 3.94 AT3G62590.1
alpha/beta-Hydrolases superfamily protein
Chr3_+_1635194 3.78 AT3G05630.1
phospholipase D P2
Chr2_+_12871984 3.77 AT2G30140.1
AT2G30140.2
UDP-Glycosyltransferase superfamily protein
Chr5_-_763322 3.47 AT5G03210.1
E3 ubiquitin-protein ligase
Chr5_-_552827 3.45 AT5G02490.1
Heat shock protein 70 (Hsp 70) family protein
Chr1_-_27466348 3.19 AT1G73010.1
inorganic pyrophosphatase 1
Chr5_-_763480 3.18 AT5G03210.2
E3 ubiquitin-protein ligase
Chr5_-_2961382 3.17 AT5G09530.1
hydroxyproline-rich glycoprotein family protein
Chr5_-_17534796 3.08 AT5G43650.1
AT5G43650.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_+_7116687 3.03 AT5G20960.2
aldehyde oxidase 1
Chr4_+_13275200 3.03 AT4G26200.1
1-amino-cyclopropane-1-carboxylate synthase 7
Chr5_+_7116455 3.01 AT5G20960.1
aldehyde oxidase 1
Chr4_-_17875201 2.93 AT4G38060.1
AT4G38060.3
AT4G38060.4
hypothetical protein
Chr4_+_15230008 2.90 AT4G31380.1
flowering-promoting factor-like protein
Chr2_+_8647721 2.85 AT2G20030.1
RING/U-box superfamily protein
Chr4_-_13975919 2.85 AT4G28140.1
Integrase-type DNA-binding superfamily protein
Chr3_-_845096 2.80 AT3G03530.1
non-specific phospholipase C4
Chr1_-_659980 2.80 AT1G02920.1
glutathione S-transferase 7
Chr4_+_18023121 2.76 AT4G38540.1
FAD/NAD(P)-binding oxidoreductase family protein
Chr4_+_17440177 2.61 AT4G36990.1
heat shock factor 4
Chr4_-_17874803 2.56 AT4G38060.2
hypothetical protein
Chr1_+_4822439 2.54 AT1G14080.1
fucosyltransferase 6
Chr2_+_19136019 2.44 AT2G46600.1
Calcium-binding EF-hand family protein
Chr1_+_11844660 2.43 AT1G32740.2
AT1G32740.1
AT1G32740.3
SBP (S-ribonuclease binding protein) family protein
Chr1_+_17643976 2.38 AT1G47890.1
receptor like protein 7
Chr5_+_20891163 2.35 AT5G51440.1
HSP20-like chaperones superfamily protein
Chr3_+_3667205 2.34 AT3G11600.1
E3 ubiquitin-protein ligase
Chr3_-_22915393 2.33 AT3G61890.1
homeobox 12
Chr2_-_19412328 2.30 AT2G47270.1
transcription factor UPBEAT protein
Chr3_-_886410 2.29 AT3G03650.1
Exostosin family protein
Chr5_+_5087219 2.24 AT5G15640.1
AT5G15640.2
Mitochondrial substrate carrier family protein
Chr4_-_14776058 2.19 AT4G30190.2
H[+]-ATPase 2
Chr4_-_14776247 2.19 AT4G30190.1
H[+]-ATPase 2
Chr5_-_22822904 2.17 AT5G56350.1
Pyruvate kinase family protein
Chr5_-_9944942 2.17 AT5G27920.1
F-box family protein
Chr5_+_24102814 2.15 AT5G59820.1
C2H2-type zinc finger family protein
Chr5_+_25692425 2.15 AT5G64230.1
1,8-cineole synthase
Chr2_+_13436485 2.15 AT2G31560.1
AT2G31560.3
AT2G31560.2
signal transducer/transcription protein, putative (DUF1685)
Chr3_+_19723350 2.15 AT3G53230.1
ATPase, AAA-type, CDC48 protein
Chr5_+_19135952 2.11 AT5G47120.1
BAX inhibitor 1
Chr3_-_6676520 2.04 AT3G19270.1
AT3G19270.2
cytochrome P450, family 707, subfamily A, polypeptide 4
Chr4_-_404379 2.03 AT4G00940.3
Dof-type zinc finger DNA-binding family protein
Chr5_-_19607147 2.02 AT5G48380.1
BAK1-interacting receptor-like kinase 1
Chr5_+_23663136 1.99 AT5G58540.3
AT5G58540.1
Protein kinase superfamily protein
Chr1_+_7496998 1.98 AT1G21410.1
AT1G21410.2
F-box/RNI-like superfamily protein
Chr2_-_8091736 1.98 AT2G18660.1
plant natriuretic peptide A
Chr2_-_9056481 1.97 AT2G21130.1
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr4_-_404670 1.87 AT4G00940.2
Dof-type zinc finger DNA-binding family protein
Chr4_+_11172622 1.86 AT4G20860.1
FAD-binding Berberine family protein
Chr5_+_23663363 1.86 AT5G58540.2
Protein kinase superfamily protein
Chr3_-_2905931 1.85 AT3G09440.4
AT3G09440.2
AT3G09440.1
Heat shock protein 70 (Hsp 70) family protein
Chr1_+_11844988 1.84 AT1G32740.4
SBP (S-ribonuclease binding protein) family protein
Chr3_-_2905729 1.84 AT3G09440.3
Heat shock protein 70 (Hsp 70) family protein
Chr4_-_404873 1.80 AT4G00940.1
Dof-type zinc finger DNA-binding family protein
Chr2_+_11625157 1.77 AT2G27200.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_4995426 1.75 AT3G14850.2
TRICHOME BIREFRINGENCE-LIKE 41
Chr5_+_864261 1.73 AT5G03460.1
transmembrane protein
Chr2_-_12666113 1.73 AT2G29620.2
AT2G29620.1
AT2G29620.4
AT2G29620.3
dentin sialophosphoprotein
Chr2_+_3618058 1.69 AT2G08986.1
hypothetical protein
Chr5_+_6756633 1.69 AT5G20000.1
AAA-type ATPase family protein
Chr1_-_29459493 1.68 AT1G78290.2
AT1G78290.3
Protein kinase superfamily protein
Chr3_+_4995941 1.67 AT3G14850.1
TRICHOME BIREFRINGENCE-LIKE 41
Chr3_-_18616393 1.66 AT3G50210.2
AT3G50210.4
AT3G50210.3
AT3G50210.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr2_-_9767 1.65 AT2G01023.1
hypothetical protein
Chr5_+_24353562 1.63 AT5G60580.3
AT5G60580.1
AT5G60580.4
RING/U-box superfamily protein
Chr2_-_7485240 1.63 AT2G17200.1
ubiquitin family protein
Chr4_+_17447713 1.62 AT4G37022.1
hypothetical protein
Chr3_+_3019249 1.60 AT3G09840.1
cell division cycle 48
Chr3_+_19265141 1.60 AT3G51910.1
heat shock transcription factor A7A
Chr1_+_11181504 1.59 AT1G31280.1
Argonaute family protein
Chr1_-_18667677 1.56 AT1G50390.1
pfkB-like carbohydrate kinase family protein
Chr3_+_21932627 1.56 AT3G59350.4
AT3G59350.5
AT3G59350.3
Protein kinase superfamily protein
Chr4_+_18276311 1.56 AT4G39270.1
AT4G39270.4
AT4G39270.5
AT4G39270.3
AT4G39270.6
AT4G39270.10
AT4G39270.7
AT4G39270.9
AT4G39270.8
AT4G39270.2
Leucine-rich repeat protein kinase family protein
Chr5_-_22024658 1.51 AT5G54240.1
membrane lipoprotein lipid attachment site-like protein, putative (DUF1223)
Chr5_+_1243684 1.50 AT5G04410.1
NAC domain containing protein 2
Chr3_-_19692578 1.47 AT3G53120.1
Modifier of rudimentary (Mod(r)) protein
Chr5_+_4615163 1.46 AT5G14310.1
carboxyesterase 16
Chr2_-_19527580 1.46 AT2G47600.1
magnesium/proton exchanger
Chr2_+_16655577 1.46 AT2G39890.1
AT2G39890.2
proline transporter 1
Chr2_+_16656348 1.44 AT2G39890.3
proline transporter 1
Chr3_+_21932337 1.44 AT3G59350.2
AT3G59350.1
Protein kinase superfamily protein
Chr4_+_14073008 1.44 AT4G28480.1
AT4G28480.2
DNAJ heat shock family protein
Chr3_-_16926883 1.41 AT3G46090.1
C2H2 and C2HC zinc fingers superfamily protein
Chr2_+_8695374 1.40 AT2G20142.1
Toll-Interleukin-Resistance (TIR) domain family protein
Chr5_+_3676548 1.40 AT5G11500.2
AT5G11500.1
coiled-coil protein
Chr4_+_7042354 1.40 AT4G11660.1
winged-helix DNA-binding transcription factor family protein
Chr2_-_8192536 1.40 AT2G18900.1
Transducin/WD40 repeat-like superfamily protein
Chr3_+_2156736 1.39 AT3G06840.1
hypothetical protein
Chr5_+_21661444 1.39 AT5G53400.1
HSP20-like chaperones superfamily protein
Chr1_-_29488007 1.39 AT1G78380.1
glutathione S-transferase TAU 19
Chr5_-_21291928 1.38 AT5G52450.1
MATE efflux family protein
Chr3_-_5642737 1.38 AT3G16565.1
AT3G16565.6
AT3G16565.4
AT3G16565.5
AT3G16565.2
AT3G16565.3
threonyl and alanyl tRNA synthetase second additional domain-containing protein
Chr1_-_10212722 1.37 AT1G29220.1
AT1G29220.2
transcriptional regulator family protein
Chr3_+_1362905 1.37 AT3G04930.2
DNA-binding storekeeper protein-related transcriptional regulator
Chr1_-_4503543 1.36 AT1G13195.2
AT1G13195.1
RING/U-box superfamily protein
Chr3_+_1362497 1.36 AT3G04930.1
DNA-binding storekeeper protein-related transcriptional regulator
Chr5_+_5686299 1.35 AT5G17280.1
oxidoreductase-like protein, amino-terminal protein
Chr3_+_8254559 1.35 AT3G23150.1
AT3G23150.2
Signal transduction histidine kinase, hybrid-type, ethylene sensor
Chr5_+_24354057 1.33 AT5G60580.2
RING/U-box superfamily protein
Chr5_+_1238820 1.32 AT5G04390.1
C2H2-type zinc finger family protein
Chr4_+_14447338 1.30 AT4G29340.1
profilin 4
Chr1_-_342040 1.29 AT1G01980.1
FAD-binding Berberine family protein
Chr1_-_8607484 1.29 AT1G24267.1
AT1G24267.2
bZIP transcription factor, putative (DUF1664)
Chr2_+_10244745 1.28 AT2G24100.1
ATP-dependent DNA helicase
Chr4_+_12080060 1.24 AT4G23050.2
PAS domain-containing protein tyrosine kinase family protein
Chr2_+_773645 1.24 AT2G02760.2
AT2G02760.1
AT2G02760.4
AT2G02760.3
ubiquiting-conjugating enzyme 2
Chr5_-_3883111 1.24 AT5G12020.1
17.6 kDa class II heat shock protein
Chr5_-_8142432 1.24 AT5G24080.1
AT5G24080.3
AT5G24080.2
Protein kinase superfamily protein
Chr1_+_20366313 1.24 AT1G54530.1
Calcium-binding EF hand family protein
Chr2_-_12665828 1.24 AT2G29620.6
AT2G29620.5
dentin sialophosphoprotein
Chr5_+_3370096 1.23 AT5G10660.1
AT5G10660.3
calmodulin-binding protein-like protein
Chr5_+_22729182 1.23 AT5G56150.2
ubiquitin-conjugating enzyme 30
Chr5_+_16579936 1.22 AT5G41410.1
POX (plant homeobox) family protein
Chr5_+_22729015 1.22 AT5G56150.1
ubiquitin-conjugating enzyme 30
Chr3_+_21932971 1.22 AT3G59350.6
Protein kinase superfamily protein
Chr1_-_7830275 1.22 AT1G22180.1
AT1G22180.3
AT1G22180.2
AT1G22180.4
Sec14p-like phosphatidylinositol transfer family protein
Chr3_-_1583073 1.21 AT3G05470.1
Actin-binding FH2 (formin homology 2) family protein
Chr4_+_12079859 1.20 AT4G23050.1
PAS domain-containing protein tyrosine kinase family protein
Chr3_+_18129452 1.20 AT3G48890.1
membrane-associated progesterone binding protein 3
Chr1_+_25543949 1.20 AT1G68150.1
WRKY DNA-binding protein 9
Chr5_+_22667220 1.19 AT5G55970.3
AT5G55970.1
AT5G55970.2
RING/U-box superfamily protein
Chr5_-_19014110 1.19 AT5G46860.1
Syntaxin/t-SNARE family protein
Chr3_+_151725 1.19 AT3G01400.1
ARM repeat superfamily protein
Chr5_+_26296025 1.18 AT5G65720.1
AT5G65720.3
nitrogen fixation S (NIFS)-like 1
Chr3_+_18733021 1.17 AT3G50480.2
AT3G50480.1
homolog of RPW8 4
Chr4_-_17339077 1.15 AT4G36791.1
hypothetical protein
Chr2_+_10066117 1.14 AT2G23680.2
AT2G23680.1
Cold acclimation protein WCOR413 family
Chr2_+_18986133 1.13 AT2G46240.1
BCL-2-associated athanogene 6
Chr2_+_11135624 1.13 AT2G26150.2
AT2G26150.1
AT2G26150.4
AT2G26150.3
heat shock transcription factor A2
Chr3_-_22244061 1.13 AT3G60180.2
AT3G60180.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_26296253 1.13 AT5G65720.2
nitrogen fixation S (NIFS)-like 1
Chr3_-_19496084 1.13 AT3G52560.2
AT3G52560.3
AT3G52560.4
AT3G52560.1
ubiquitin E2 variant 1D-4
Chr1_-_8172484 1.12 AT1G23060.2
AT1G23060.5
hypothetical protein
Chr3_-_8734562 1.12 AT3G24170.3
AT3G24170.1
glutathione-disulfide reductase
Chr2_+_841246 1.12 AT2G02880.1
mucin-like protein
Chr2_+_18898629 1.11 AT2G45920.1
AT2G45920.2
U-box domain-containing protein
Chr2_-_12504912 1.09 AT2G29100.1
AT2G29100.2
glutamate receptor 2.9
Chr4_+_14806251 1.09 AT4G30230.1
hypothetical protein
Chr3_-_8734362 1.08 AT3G24170.2
glutathione-disulfide reductase
Chr5_+_7919377 1.07 AT5G23490.2
AT5G23490.3
AT5G23490.1
AT5G23490.4
hypothetical protein
Chr1_+_25964319 1.07 AT1G69060.1
Chaperone DnaJ-domain superfamily protein
Chr1_-_1494248 1.07 AT1G05170.2
AT1G05170.1
Galactosyltransferase family protein
Chr1_+_23230922 1.06 AT1G62740.1
stress-inducible protein
Chr2_-_10956090 1.06 AT2G25720.1
hypothetical protein
Chr2_+_7399056 1.05 AT2G17030.1
F-box SKIP23-like protein (DUF295)
Chr3_-_15871256 1.05 AT3G44110.1
AT3G44110.2
DNAJ homologue 3
Chr1_-_8172696 1.03 AT1G23060.3
AT1G23060.4
hypothetical protein
Chr5_+_26857154 1.03 AT5G67320.1
WD-40 repeat family protein
Chr5_-_7997505 1.03 AT5G23710.1
DNA binding / DNA-directed RNA polymerase
Chr3_-_2244820 1.03 AT3G07090.2
AT3G07090.1
PPPDE putative thiol peptidase family protein
Chr2_+_9350543 1.02 AT2G21940.1
AT2G21940.6
AT2G21940.3
AT2G21940.2
AT2G21940.4
shikimate kinase 1
Chr5_+_24761041 1.02 AT5G61580.1
AT5G61580.2
phosphofructokinase 4
Chr5_+_15268674 1.01 AT5G38220.1
AT5G38220.2
AT5G38220.3
alpha/beta-Hydrolases superfamily protein
Chr4_+_2229649 1.01 AT4G04480.1
F-box protein with a domain protein
Chr1_-_22057268 1.01 AT1G59910.1
Actin-binding FH2 (formin homology 2) family protein
Chr4_+_460395 1.01 AT4G01060.3
AT4G01060.2
AT4G01060.1
CAPRICE-like MYB3
Chr5_+_23643009 1.01 AT5G58490.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_-_2616934 1.00 AT3G08610.1
NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit
Chr2_-_11952248 1.00 AT2G28060.3
AT2G28060.4
AT2G28060.1
AT2G28060.2
5'-AMP-activated protein kinase beta-2 subunit protein
Chr4_+_708357 0.99 AT4G01660.1
ABC transporter 1
Chr5_+_26421610 0.99 AT5G66070.1
AT5G66070.3
AT5G66070.4
AT5G66070.2
AT5G66070.5
RING/U-box superfamily protein
Chr4_+_2029855 0.99 AT4G04210.1
plant UBX domain containing protein 4
Chr3_+_7116068 0.99 AT3G20410.2
calmodulin-domain protein kinase 9
Chr1_-_25368834 0.99 AT1G67680.1
SRP72 RNA-binding domain-containing protein
Chr1_-_3012407 0.99 AT1G09320.1
agenet domain-containing protein
Chr4_+_5847312 0.98 AT4G09180.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_9753855 0.98 AT3G26560.1
ATP-dependent RNA helicase
Chr1_+_8227133 0.98 AT1G23200.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr3_-_19935392 0.98 AT3G53810.1
Concanavalin A-like lectin protein kinase family protein
Chr3_+_7115819 0.98 AT3G20410.1
calmodulin-domain protein kinase 9
Chr3_+_5755714 0.98 AT3G16857.1
AT3G16857.2
response regulator 1
Chr1_-_18047806 0.98 AT1G48790.1
associated molecule with the SH3 domain of STAM 1
Chr4_-_14213671 0.97 AT4G28770.1
Tetraspanin family protein
Chr1_-_30062628 0.96 AT1G79920.2
AT1G79920.4
AT1G79920.3
AT1G79920.1
Heat shock protein 70 (Hsp 70) family protein
Chr4_-_14213969 0.95 AT4G28770.2
Tetraspanin family protein
Chr1_-_18539995 0.95 AT1G50030.1
AT1G50030.2
target of rapamycin
Chr2_-_7135652 0.93 AT2G16460.2
coiled-coil 90B-like protein (DUF1640)
Chr3_-_7190648 0.92 AT3G20580.1
COBRA-like protein 10 precursor
Chr2_+_16108235 0.92 AT2G38470.1
WRKY DNA-binding protein 33
Chr1_+_11797330 0.92 AT1G32630.1
AT1G32630.2
FAM50A-like protein
Chr3_+_5756356 0.91 AT3G16857.3
response regulator 1
Chr3_-_22169984 0.91 AT3G60030.1
squamosa promoter-binding protein-like 12
Chr2_+_7824166 0.91 AT2G17980.1
Sec1/munc18-like (SM) proteins superfamily
Chr2_-_7135812 0.91 AT2G16460.1
coiled-coil 90B-like protein (DUF1640)
Chr5_-_10802887 0.91 AT5G28773.1

Chr1_+_10180599 0.89 AT1G29150.2
non-ATPase subunit 9
Chr2_-_1123267 0.89 AT2G03690.1
coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein
Chr1_-_22191543 0.89 AT1G60160.1
Potassium transporter family protein
Chr3_+_2425884 0.89 AT3G07610.2
AT3G07610.1
Transcription factor jumonji (jmjC) domain-containing protein
Chr4_+_12645542 0.88 AT4G24470.2
AT4G24470.1
AT4G24470.3
GATA-type zinc finger protein with TIFY domain-containing protein
Chr5_-_2088997 0.88 AT5G06750.2
AT5G06750.3
Protein phosphatase 2C family protein
Chr2_-_9002905 0.87 AT2G20940.2
AT2G20940.1
transmembrane protein, putative (DUF1279)
Chr5_+_26926551 0.87 AT5G67470.1
formin homolog 6
Chr5_-_17825762 0.87 AT5G44250.1
AT5G44250.2
peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53)
Chr5_+_2975436 0.86 AT5G09590.1
mitochondrial HSO70 2
Chr5_+_6751798 0.86 AT5G19990.1
AT5G19990.2
AT5G19990.3
regulatory particle triple-A ATPase 6A
Chr1_-_23029339 0.86 AT1G62305.2
AT1G62305.3
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr3_-_21869036 0.86 AT3G59140.1
multidrug resistance-associated protein 14

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G11660

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 6.0 GO:0090059 protoxylem development(GO:0090059)
0.7 2.2 GO:0045002 DNA double-strand break processing involved in repair via single-strand annealing(GO:0010792) double-strand break repair via single-strand annealing(GO:0045002)
0.7 2.1 GO:1903513 retrograde protein transport, ER to cytosol(GO:0030970) endoplasmic reticulum to cytosol transport(GO:1903513)
0.7 2.1 GO:0006984 ER-nucleus signaling pathway(GO:0006984)
0.6 3.8 GO:0006654 phosphatidic acid biosynthetic process(GO:0006654)
0.6 2.9 GO:0015824 proline transport(GO:0015824)
0.5 1.4 GO:0048832 specification of organ number(GO:0048832) specification of floral organ number(GO:0048833)
0.4 1.3 GO:0034247 snoRNA splicing(GO:0034247)
0.4 1.6 GO:0090065 regulation of production of siRNA involved in RNA interference(GO:0090065)
0.4 1.1 GO:0046704 CDP metabolic process(GO:0046704) CDP biosynthetic process(GO:0046705)
0.3 1.4 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.3 2.0 GO:0046345 sesquiterpenoid catabolic process(GO:0016107) apocarotenoid catabolic process(GO:0043290) abscisic acid catabolic process(GO:0046345)
0.3 1.0 GO:1900369 negative regulation of gene silencing by RNA(GO:0060967) negative regulation of RNA interference(GO:1900369)
0.3 1.3 GO:1901654 response to ketone(GO:1901654)
0.3 1.3 GO:0042989 sequestering of actin monomers(GO:0042989)
0.3 1.6 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.3 0.8 GO:0075733 intracellular transport of virus(GO:0075733)
0.3 1.1 GO:1902916 regulation of protein polyubiquitination(GO:1902914) positive regulation of protein polyubiquitination(GO:1902916)
0.3 2.2 GO:0009643 photosynthetic acclimation(GO:0009643)
0.3 3.5 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.3 1.8 GO:0019632 shikimate metabolic process(GO:0019632)
0.2 1.0 GO:0031468 nuclear envelope reassembly(GO:0031468)
0.2 7.6 GO:0042026 protein refolding(GO:0042026)
0.2 1.0 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.2 3.9 GO:0051262 protein tetramerization(GO:0051262)
0.2 0.7 GO:2000693 positive regulation of seed maturation(GO:2000693)
0.2 1.6 GO:0006000 fructose metabolic process(GO:0006000)
0.2 2.0 GO:0010230 alternative respiration(GO:0010230)
0.2 0.6 GO:0090435 protein localization to nuclear envelope(GO:0090435)
0.2 1.9 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.2 0.8 GO:1900109 histone H3-K9 dimethylation(GO:0036123) regulation of histone H3-K9 dimethylation(GO:1900109)
0.2 1.5 GO:0033169 histone H3-K9 demethylation(GO:0033169)
0.2 1.4 GO:0010508 positive regulation of autophagy(GO:0010508)
0.2 1.0 GO:0070536 protein K63-linked deubiquitination(GO:0070536)
0.2 1.2 GO:0033523 histone H2B ubiquitination(GO:0033523)
0.2 1.5 GO:0043462 regulation of ATPase activity(GO:0043462)
0.1 3.6 GO:0009395 phospholipid catabolic process(GO:0009395)
0.1 2.5 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.1 1.5 GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043162)
0.1 0.7 GO:0009866 induced systemic resistance, ethylene mediated signaling pathway(GO:0009866)
0.1 1.7 GO:0043248 proteasome assembly(GO:0043248)
0.1 1.5 GO:0048317 seed morphogenesis(GO:0048317)
0.1 0.7 GO:0006216 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.1 1.5 GO:0015693 magnesium ion transport(GO:0015693)
0.1 1.2 GO:0009610 response to symbiotic fungus(GO:0009610)
0.1 1.1 GO:0051131 chaperone-mediated protein complex assembly(GO:0051131)
0.1 1.0 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.1 8.5 GO:0009615 response to virus(GO:0009615)
0.1 4.2 GO:0009407 toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487)
0.1 0.5 GO:0042276 error-prone translesion synthesis(GO:0042276)
0.1 2.3 GO:0016226 iron-sulfur cluster assembly(GO:0016226) metallo-sulfur cluster assembly(GO:0031163)
0.1 1.3 GO:0010105 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.1 0.4 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.1 0.7 GO:0080183 response to photooxidative stress(GO:0080183)
0.1 0.7 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 1.6 GO:0034620 cellular response to unfolded protein(GO:0034620)
0.1 0.2 GO:0042539 hypotonic response(GO:0006971) hypotonic salinity response(GO:0042539)
0.1 2.3 GO:1900673 ethylene metabolic process(GO:0009692) ethylene biosynthetic process(GO:0009693) cellular alkene metabolic process(GO:0043449) alkene biosynthetic process(GO:0043450) olefin metabolic process(GO:1900673) olefin biosynthetic process(GO:1900674)
0.1 0.4 GO:1990019 protein storage vacuole organization(GO:1990019)
0.1 0.3 GO:0000084 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.1 0.7 GO:0035435 phosphate ion transmembrane transport(GO:0035435)
0.1 0.2 GO:0043476 pigmentation(GO:0043473) pigment accumulation(GO:0043476) pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.1 1.0 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.1 1.1 GO:0010030 positive regulation of seed germination(GO:0010030)
0.1 2.0 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.1 2.0 GO:0060548 negative regulation of cell death(GO:0060548)
0.1 4.0 GO:0009561 megagametogenesis(GO:0009561)
0.1 1.6 GO:0051781 positive regulation of cell division(GO:0051781)
0.0 1.7 GO:0010091 trichome branching(GO:0010091)
0.0 0.4 GO:0009061 anaerobic respiration(GO:0009061)
0.0 0.9 GO:0010215 cellulose microfibril organization(GO:0010215)
0.0 0.7 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.0 0.5 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.0 0.9 GO:0006904 vesicle docking involved in exocytosis(GO:0006904)
0.0 0.1 GO:0032491 detection of molecule of fungal origin(GO:0032491)
0.0 0.9 GO:0051084 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.0 1.2 GO:0051259 protein oligomerization(GO:0051259)
0.0 0.8 GO:0033962 cytoplasmic mRNA processing body assembly(GO:0033962)
0.0 0.2 GO:0016255 attachment of GPI anchor to protein(GO:0016255)
0.0 2.4 GO:0002239 response to oomycetes(GO:0002239)
0.0 1.1 GO:0071230 cellular response to amino acid stimulus(GO:0071230)
0.0 3.2 GO:1902600 hydrogen ion transmembrane transport(GO:1902600)
0.0 1.0 GO:0016575 histone deacetylation(GO:0016575)
0.0 2.3 GO:0034605 cellular response to heat(GO:0034605)
0.0 1.2 GO:0045324 late endosome to vacuole transport(GO:0045324)
0.0 0.4 GO:0006893 Golgi to plasma membrane transport(GO:0006893)
0.0 6.4 GO:0009909 regulation of flower development(GO:0009909)
0.0 1.0 GO:0006614 cotranslational protein targeting to membrane(GO:0006613) SRP-dependent cotranslational protein targeting to membrane(GO:0006614)
0.0 2.3 GO:2000280 regulation of root development(GO:2000280)
0.0 0.4 GO:0080113 regulation of seed growth(GO:0080113)
0.0 1.7 GO:0006897 endocytosis(GO:0006897)
0.0 0.4 GO:0051555 flavone biosynthetic process(GO:0051553) flavonol biosynthetic process(GO:0051555)
0.0 2.5 GO:0018209 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.0 0.6 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.0 0.3 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 1.2 GO:0048481 plant ovule development(GO:0048481)
0.0 0.7 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.0 2.4 GO:0000209 protein polyubiquitination(GO:0000209)
0.0 0.5 GO:2000762 regulation of phenylpropanoid metabolic process(GO:2000762)
0.0 0.4 GO:0009880 embryonic pattern specification(GO:0009880)
0.0 0.5 GO:0065001 polarity specification of adaxial/abaxial axis(GO:0009944) specification of axis polarity(GO:0065001)
0.0 0.2 GO:0018344 protein geranylgeranylation(GO:0018344)
0.0 1.2 GO:0048544 recognition of pollen(GO:0048544)
0.0 0.6 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.0 1.4 GO:0009624 response to nematode(GO:0009624)
0.0 0.3 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.0 0.4 GO:0010227 floral organ abscission(GO:0010227)
0.0 1.0 GO:0009567 fertilization(GO:0009566) double fertilization forming a zygote and endosperm(GO:0009567)
0.0 3.3 GO:0036294 cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456)
0.0 0.5 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.0 0.7 GO:0016573 internal protein amino acid acetylation(GO:0006475) histone acetylation(GO:0016573) internal peptidyl-lysine acetylation(GO:0018393) peptidyl-lysine acetylation(GO:0018394)
0.0 1.7 GO:0080167 response to karrikin(GO:0080167)
0.0 0.3 GO:0006743 ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744)
0.0 0.7 GO:0016144 S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761)
0.0 1.3 GO:0070646 protein modification by small protein removal(GO:0070646)
0.0 0.2 GO:0006646 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.0 0.7 GO:0042538 hyperosmotic salinity response(GO:0042538)
0.0 0.3 GO:0031124 mRNA 3'-end processing(GO:0031124)
0.0 2.1 GO:0000398 mRNA splicing, via spliceosome(GO:0000398)
0.0 1.5 GO:0007568 aging(GO:0007568)
0.0 0.4 GO:0010090 trichome morphogenesis(GO:0010090)
0.0 0.3 GO:0010162 seed dormancy process(GO:0010162) dormancy process(GO:0022611)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 3.7 GO:0016363 nuclear matrix(GO:0016363)
0.4 2.1 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.2 0.9 GO:0031932 TORC2 complex(GO:0031932)
0.2 2.2 GO:0035861 site of double-strand break(GO:0035861)
0.2 1.6 GO:0070390 transcription export complex 2(GO:0070390)
0.2 1.5 GO:0000813 ESCRT I complex(GO:0000813)
0.2 1.1 GO:0031371 ubiquitin conjugating enzyme complex(GO:0031371) UBC13-MMS2 complex(GO:0031372)
0.1 0.7 GO:0043527 tRNA methyltransferase complex(GO:0043527)
0.1 1.6 GO:0030125 clathrin vesicle coat(GO:0030125) clathrin-coated vesicle membrane(GO:0030665)
0.1 4.4 GO:0005798 Golgi-associated vesicle(GO:0005798)
0.1 1.7 GO:0008541 proteasome regulatory particle, lid subcomplex(GO:0008541)
0.1 0.8 GO:0089701 U2AF(GO:0089701)
0.1 0.8 GO:0030118 clathrin coat(GO:0030118)
0.1 1.0 GO:0005786 signal recognition particle, endoplasmic reticulum targeting(GO:0005786)
0.1 0.7 GO:1902562 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.1 0.4 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.1 0.5 GO:1990726 Lsm1-7-Pat1 complex(GO:1990726)
0.1 1.3 GO:0031306 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.1 7.0 GO:0033648 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.1 0.9 GO:0008540 proteasome regulatory particle, base subcomplex(GO:0008540)
0.1 0.9 GO:0045275 mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275)
0.0 1.0 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 0.2 GO:0042765 GPI-anchor transamidase complex(GO:0042765)
0.0 0.9 GO:0016324 apical plasma membrane(GO:0016324)
0.0 1.0 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.0 3.4 GO:0005635 nuclear envelope(GO:0005635)
0.0 1.7 GO:0000502 proteasome complex(GO:0000502)
0.0 0.9 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 17.1 GO:0030312 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 1.0 GO:0005666 DNA-directed RNA polymerase III complex(GO:0005666)
0.0 0.2 GO:0005968 Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.0 3.7 GO:0005681 spliceosomal complex(GO:0005681)
0.0 2.0 GO:0005746 mitochondrial respiratory chain(GO:0005746)
0.0 0.3 GO:0005801 cis-Golgi network(GO:0005801)
0.0 1.2 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.3 GO:0005744 mitochondrial inner membrane presequence translocase complex(GO:0005744)
0.0 8.5 GO:0005774 vacuolar membrane(GO:0005774)
0.0 0.9 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 5.8 GO:0005773 vacuole(GO:0005773)
0.0 11.7 GO:0005794 Golgi apparatus(GO:0005794)
0.0 0.1 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.0 0.5 GO:0016592 mediator complex(GO:0016592)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 6.0 GO:0052596 tryptamine:oxygen oxidoreductase (deaminating) activity(GO:0052593) aminoacetone:oxygen oxidoreductase(deaminating) activity(GO:0052594) aliphatic-amine oxidase activity(GO:0052595) phenethylamine:oxygen oxidoreductase (deaminating) activity(GO:0052596)
0.8 2.3 GO:0031071 cysteine desulfurase activity(GO:0031071)
0.7 2.2 GO:0000403 Y-form DNA binding(GO:0000403) flap-structured DNA binding(GO:0070336)
0.5 4.2 GO:0004715 non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.5 2.9 GO:0015193 L-proline transmembrane transporter activity(GO:0015193)
0.4 2.0 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.4 1.5 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
0.4 1.1 GO:0070678 preprotein binding(GO:0070678)
0.4 1.8 GO:0004765 shikimate kinase activity(GO:0004765)
0.3 1.4 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.3 1.5 GO:0032454 histone demethylase activity (H3-K9 specific)(GO:0032454)
0.3 3.7 GO:0002020 protease binding(GO:0002020)
0.3 1.1 GO:0033862 UMP kinase activity(GO:0033862)
0.3 1.3 GO:0072328 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.3 1.3 GO:0003785 actin monomer binding(GO:0003785)
0.2 3.6 GO:0004629 phospholipase C activity(GO:0004629)
0.2 2.5 GO:0031127 galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127)
0.2 3.8 GO:0070290 phospholipase D activity(GO:0004630) N-acylphosphatidylethanolamine-specific phospholipase D activity(GO:0070290)
0.2 2.3 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.2 3.2 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.2 4.2 GO:0043295 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.2 4.0 GO:0051787 misfolded protein binding(GO:0051787)
0.2 3.9 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.2 1.6 GO:0008865 fructokinase activity(GO:0008865)
0.1 0.7 GO:0035197 siRNA binding(GO:0035197)
0.1 1.0 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.1 2.2 GO:0031420 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.1 1.0 GO:0008022 protein C-terminus binding(GO:0008022)
0.1 2.0 GO:0016018 cyclosporin A binding(GO:0016018)
0.1 0.7 GO:0004126 cytidine deaminase activity(GO:0004126)
0.1 1.2 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.1 3.8 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.1 0.4 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.1 0.7 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 0.4 GO:0004174 electron-transferring-flavoprotein dehydrogenase activity(GO:0004174) oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor(GO:0016649)
0.1 3.0 GO:0051087 chaperone binding(GO:0051087)
0.1 1.0 GO:0008312 7S RNA binding(GO:0008312)
0.1 0.3 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.1 4.4 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.1 1.6 GO:0030276 clathrin binding(GO:0030276)
0.1 3.4 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.1 0.5 GO:0047714 galactolipase activity(GO:0047714)
0.1 0.8 GO:0030628 pre-mRNA 3'-splice site binding(GO:0030628)
0.1 0.9 GO:0052742 phosphatidylinositol kinase activity(GO:0052742)
0.1 1.0 GO:0051117 ATPase binding(GO:0051117)
0.1 1.6 GO:0004713 protein tyrosine kinase activity(GO:0004713)
0.1 0.4 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.1 2.0 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.1 1.4 GO:0031593 polyubiquitin binding(GO:0031593)
0.1 1.2 GO:0031072 heat shock protein binding(GO:0031072)
0.1 0.7 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.1 3.1 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.1 0.9 GO:0019905 syntaxin binding(GO:0019905)
0.1 0.2 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.1 1.0 GO:0003714 transcription corepressor activity(GO:0003714)
0.1 2.6 GO:0071949 FAD binding(GO:0071949)
0.1 0.8 GO:0005375 copper ion transmembrane transporter activity(GO:0005375)
0.0 0.1 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.0 1.0 GO:0070122 isopeptidase activity(GO:0070122)
0.0 1.1 GO:0008066 glutamate receptor activity(GO:0008066)
0.0 5.6 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.6 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.2 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.0 2.0 GO:0000149 SNARE binding(GO:0000149)
0.0 0.9 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.0 1.5 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.0 1.9 GO:0004683 calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.0 0.7 GO:0008143 poly(A) binding(GO:0008143)
0.0 1.1 GO:0004407 histone deacetylase activity(GO:0004407) protein deacetylase activity(GO:0033558)
0.0 1.4 GO:0042910 xenobiotic transporter activity(GO:0042910)
0.0 0.3 GO:0102391 decanoate--CoA ligase activity(GO:0102391)
0.0 1.0 GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor(GO:0016671)
0.0 4.9 GO:0005509 calcium ion binding(GO:0005509)
0.0 1.0 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 0.1 GO:0004663 Rab geranylgeranyltransferase activity(GO:0004663)
0.0 0.6 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.0 0.7 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.4 GO:0016843 amine-lyase activity(GO:0016843)
0.0 5.2 GO:0004842 ubiquitin-protein transferase activity(GO:0004842)
0.0 0.4 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 0.7 GO:0051082 unfolded protein binding(GO:0051082)
0.0 0.1 GO:0005092 GDP-dissociation inhibitor activity(GO:0005092)
0.0 0.2 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.0 1.1 GO:0051213 dioxygenase activity(GO:0051213)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 PID NFAT TFPATHWAY Calcineurin-regulated NFAT-dependent transcription in lymphocytes

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 2.3 REACTOME METABOLISM OF NUCLEOTIDES Genes involved in Metabolism of nucleotides
0.4 2.3 REACTOME METABOLISM OF VITAMINS AND COFACTORS Genes involved in Metabolism of vitamins and cofactors
0.2 0.7 REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell
0.2 0.6 REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript