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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G06746

Z-value: 1.90

Transcription factors associated with AT4G06746

Gene Symbol Gene ID Gene Info
AT4G06746
AT4G06746 related to AP2 9

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
RAP2.9arTal_v1_Chr4_-_4074735_4074735-0.702.9e-05Click!

Activity profile of AT4G06746 motif

Sorted Z-values of AT4G06746 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_18098633 10.21 AT4G38770.1
PRP4
proline-rich protein 4
Chr1_+_3157501 9.51 AT1G09750.1
AT1G09750
Eukaryotic aspartyl protease family protein
Chr4_-_7493080 8.43 AT4G12730.1
FLA2
FASCICLIN-like arabinogalactan 2
Chr5_+_8863224 8.34 AT5G25460.1
DGR2
transmembrane protein, putative (Protein of unknown function, DUF642)
Chr2_-_18744322 7.78 AT2G45470.1
FLA8
FASCICLIN-like arabinogalactan protein 8
Chr2_+_2763449 7.42 AT2G06850.1
AT2G06850.2
XTH4
xyloglucan endotransglucosylase/hydrolase 4
Chr2_+_8940833 7.41 AT2G20750.2
AT2G20750.1
EXPB1
expansin B1
Chr5_-_22560461 7.37 AT5G55730.2
AT5G55730.1
FLA1
FASCICLIN-like arabinogalactan 1
Chr5_+_4087689 7.25 AT5G12940.1
AT5G12940
Leucine-rich repeat (LRR) family protein
Chr5_+_17760865 7.20 AT5G44130.1
FLA13
FASCICLIN-like arabinogalactan protein 13 precursor
Chr5_+_26298728 7.13 AT5G65730.1
XTH6
xyloglucan endotransglucosylase/hydrolase 6
Chr3_-_8589754 6.70 AT3G23810.1
SAHH2
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr4_-_17606924 6.67 AT4G37450.1
AT4G37450.2
AGP18
arabinogalactan protein 18
Chr2_-_9062093 6.48 AT2G21140.1
PRP2
proline-rich protein 2
Chr3_+_23345754 6.34 AT3G63200.1
PLP9
PATATIN-like protein 9
Chr2_+_1676999 6.29 AT2G04780.2
FLA7
FASCICLIN-like arabinoogalactan 7
Chr2_+_1676717 6.17 AT2G04780.1
FLA7
FASCICLIN-like arabinoogalactan 7
Chr1_-_3880391 6.12 AT1G11545.1
XTH8
xyloglucan endotransglucosylase/hydrolase 8
Chr5_+_21020014 6.05 AT5G51750.1
SBT1.3
subtilase 1.3
Chr3_-_2334185 5.90 AT3G07320.1
AT3G07320
O-Glycosyl hydrolases family 17 protein
Chr2_-_15474717 5.83 AT2G36870.2
AT2G36870.1
XTH32
xyloglucan endotransglucosylase/hydrolase 32
Chr3_+_18262290 5.61 AT3G49260.1
AT3G49260.3
AT3G49260.2
AT3G49260.4
iqd21
IQ-domain 21
Chr1_+_310169 5.41 AT1G01900.1
SBTI1.1
subtilase family protein
Chr4_+_9556783 5.37 AT4G16980.1
AT4G16980
arabinogalactan-protein family
Chr5_-_990630 5.16 AT5G03760.1
ATCSLA09
Nucleotide-diphospho-sugar transferases superfamily protein
Chr4_+_6100714 5.14 AT4G09650.1
ATPD
F-type H+-transporting ATPase subunit delta
Chr3_-_4744263 5.12 AT3G14240.1
AT3G14240
Subtilase family protein
Chr1_-_15607966 5.07 AT1G41830.1
SKS6
SKU5-similar 6
Chr4_-_12772438 5.04 AT4G24780.1
AT4G24780.2
AT4G24780
Pectin lyase-like superfamily protein
Chr2_+_17592038 4.98 AT2G42220.1
AT2G42220
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr3_-_5252697 4.95 AT3G15520.1
AT3G15520.2
AT3G15520.3
AT3G15520
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr5_+_3889906 4.90 AT5G12050.1
AT5G12050
rho GTPase-activating protein
Chr3_+_5314817 4.89 AT3G15680.1
AT3G15680.2
AT3G15680
Ran BP2/NZF zinc finger-like superfamily protein
Chr1_-_4530222 4.85 AT1G13250.1
GATL3
galacturonosyltransferase-like 3
Chr4_+_11663186 4.84 AT4G22010.1
sks4
SKU5 similar 4
Chr5_+_15742543 4.79 AT5G39320.1
UDG4
UDP-glucose 6-dehydrogenase family protein
Chr2_+_6399621 4.79 AT2G14890.2
AGP9
arabinogalactan protein 9
Chr5_+_16468327 4.74 AT5G41140.1
AT5G41140.2
AT5G41140
Myosin heavy chain-related protein
Chr2_+_19145218 4.74 AT2G46630.1
AT2G46630
serine/arginine repetitive matrix protein
Chr1_+_23911024 4.73 AT1G64390.1
GH9C2
glycosyl hydrolase 9C2
Chr5_-_24990331 4.71 AT5G62220.1
GT18
glycosyltransferase 18
Chr5_+_426226 4.65 AT5G02160.1
AT5G02160
transmembrane protein
Chr5_+_16768935 4.64 AT5G41900.1
AT5G41900
alpha/beta-Hydrolases superfamily protein
Chr4_-_16806830 4.62 AT4G35320.1
AT4G35320
hypothetical protein
Chr4_-_17181261 4.58 AT4G36360.2
BGAL3
beta-galactosidase 3
Chr4_-_17181466 4.56 AT4G36360.1
BGAL3
beta-galactosidase 3
Chr5_-_3278461 4.54 AT5G10430.1
AGP4
arabinogalactan protein 4
Chr3_+_17949416 4.49 AT3G48460.1
AT3G48460
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_+_6399405 4.49 AT2G14890.1
AGP9
arabinogalactan protein 9
Chr3_-_22972239 4.49 AT3G62020.2
AT3G62020.1
GLP10
germin-like protein 10
Chr1_-_6319427 4.45 AT1G18360.1
AT1G18360
alpha/beta-Hydrolases superfamily protein
Chr3_+_8586359 4.43 AT3G23805.1
RALFL24
ralf-like 24
Chr1_+_12026936 4.43 AT1G33170.1
AT1G33170
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_-_10278794 4.41 AT4G18670.1
AT4G18670
Leucine-rich repeat (LRR) family protein
Chr4_-_12768239 4.40 AT4G24770.1
RBP31
31-kDa RNA binding protein
Chr4_-_12769419 4.39 AT4G24770.2
RBP31
31-kDa RNA binding protein
Chr4_+_160643 4.38 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr1_+_28428671 4.37 AT1G75710.1
AT1G75710
C2H2-like zinc finger protein
Chr3_-_3108266 4.28 AT3G10080.1
AT3G10080.2
AT3G10080
RmlC-like cupins superfamily protein
Chr4_+_17243583 4.28 AT4G36540.2
AT4G36540.1
BEE2
BR enhanced expression 2
Chr3_-_23328789 4.22 AT3G63140.1
CSP41A
chloroplast stem-loop binding protein of 41 kDa
Chr4_-_17979740 4.20 AT4G38400.1
AT4G38401.1
EXLA2
AT4G38401
expansin-like A2
hypothetical protein
Chr3_-_2175686 4.18 AT3G06880.1
AT3G06880.5
AT3G06880.4
AT3G06880.3
AT3G06880.2
AT3G06880
Transducin/WD40 repeat-like superfamily protein
Chr4_+_15819489 4.18 AT4G32800.1
AT4G32800
Integrase-type DNA-binding superfamily protein
Chr1_-_8559066 4.16 AT1G24170.1
LGT9
Nucleotide-diphospho-sugar transferases superfamily protein
Chr2_+_13940187 4.12 AT2G32860.2
AT2G32860.1
BGLU33
beta glucosidase 33
Chr1_-_1307973 4.09 AT1G04680.1
AT1G04680
Pectin lyase-like superfamily protein
Chr3_-_8902835 4.07 AT3G24480.1
AT3G24480
Leucine-rich repeat (LRR) family protein
Chr4_+_11907355 4.07 AT4G22620.1
AT4G22620
SAUR-like auxin-responsive protein family
Chr3_+_18973126 4.07 AT3G51080.1
GATA6
GATA transcription factor 6
Chr1_-_29643535 4.05 AT1G78850.1
AT1G78850
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr1_-_1349478 3.96 AT1G04800.1
AT1G04800
glycine-rich protein
Chr5_+_6387341 3.93 AT5G19090.1
AT5G19090.4
AT5G19090.3
AT5G19090.2
AT5G19090
Heavy metal transport/detoxification superfamily protein
Chr3_-_5252506 3.85 AT3G15520.4
AT3G15520
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr5_-_345457 3.84 AT5G01890.1
AT5G01890
Leucine-rich receptor-like protein kinase family protein
Chr3_+_6105908 3.78 AT3G17840.1
RLK902
receptor-like kinase 902
Chr4_-_13398307 3.76 AT4G26540.1
AT4G26540
Leucine-rich repeat receptor-like protein kinase family protein
Chr4_-_15312987 3.75 AT4G31590.1
CSLC5
Cellulose-synthase-like C5
Chr5_+_21582614 3.69 AT5G53200.1
TRY
Homeodomain-like superfamily protein
Chr4_+_14304921 3.68 AT4G29020.2
AT4G29020.1
AT4G29020
glycine-rich protein
Chr3_+_10505711 3.65 AT3G28180.1
CSLC04
Cellulose-synthase-like C4
Chr2_-_15797059 3.62 AT2G37660.1
AT2G37660
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_19673652 3.61 AT1G52830.1
IAA6
indole-3-acetic acid 6
Chr4_-_13496738 3.61 AT4G26830.1
AT4G26830.2
AT4G26830
O-Glycosyl hydrolases family 17 protein
Chr4_-_9305763 3.60 AT4G16515.1
AT4G16515.2
RGF6
root meristem growth factor
Chr4_-_14002069 3.60 AT4G28250.2
AT4G28250.3
AT4G28250.4
AT4G28250.1
EXPB3
expansin B3
Chr3_-_1855063 3.60 AT3G06130.2
AT3G06130.1
AT3G06130
Heavy metal transport/detoxification superfamily protein
Chr1_+_8156504 3.58 AT1G23030.1
AT1G23030
ARM repeat superfamily protein
Chr1_+_26220190 3.58 AT1G69700.1
HVA22C
HVA22 homologue C
Chr3_+_11252807 3.57 AT3G29320.1
PHS1
Glycosyl transferase, family 35
Chr1_+_3031046 3.52 AT1G09390.1
AT1G09390
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_+_3032375 3.49 AT5G09760.1
AT5G09760
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_-_18690503 3.49 AT1G50450.1
AT1G50450
Saccharopine dehydrogenase
Chr1_-_9458176 3.46 AT1G27210.1
AT1G27210
ARM repeat superfamily protein
Chr5_+_3032019 3.42 AT5G09760.2
AT5G09760
Plant invertase/pectin methylesterase inhibitor superfamily
Chr3_-_2137012 3.39 AT3G06770.1
AT3G06770.5
AT3G06770
Pectin lyase-like superfamily protein
Chr5_+_8151907 3.37 AT5G24105.1
AGP41
arabinogalactan protein 41
Chr1_+_18351324 3.37 AT1G49580.1
AT1G49580
Calcium-dependent protein kinase (CDPK) family protein
Chr1_-_4217412 3.35 AT1G12380.1
AT1G12380
hypothetical protein
Chr3_-_2137280 3.35 AT3G06770.4
AT3G06770.3
AT3G06770
Pectin lyase-like superfamily protein
Chr1_-_28453820 3.34 AT1G75780.1
TUB1
tubulin beta-1 chain
Chr5_+_72292 3.33 AT5G01190.2
AT5G01190.1
LAC10
laccase 10
Chr4_+_12876822 3.32 AT4G25080.6
AT4G25080.5
AT4G25080.2
AT4G25080.1
AT4G25080.3
AT4G25080.4
CHLM
magnesium-protoporphyrin IX methyltransferase
Chr5_-_7652714 3.32 AT5G22880.1
HTB2
histone B2
Chr3_-_9723904 3.31 AT3G26520.1
TIP2
tonoplast intrinsic protein 2
Chr3_+_21948851 3.31 AT3G59410.3
GCN2
protein kinase family protein
Chr3_-_23417119 3.29 AT3G63410.1
APG1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_+_12188678 3.25 AT1G33610.1
AT1G33610
Leucine-rich repeat (LRR) family protein
Chr2_-_5675995 3.23 AT2G13610.1
ABCG5
ABC-2 type transporter family protein
Chr3_-_9255083 3.22 AT3G25500.1
AFH1
formin homology 1
Chr5_+_6122725 3.22 AT5G18460.1
AT5G18460
carboxyl-terminal peptidase (DUF239)
Chr4_+_8470179 3.22 AT4G14750.2
AT4G14750.3
AT4G14750.1
IQD19
IQ-domain 19
Chr1_+_5514262 3.21 AT1G16080.1
AT1G16080
nuclear protein
Chr5_-_5833989 3.19 AT5G17700.2
AT5G17700.1
AT5G17700.3
AT5G17700
MATE efflux family protein
Chr3_+_3012094 3.18 AT3G09820.2
ADK1
adenosine kinase 1
Chr5_+_17130186 3.18 AT5G42720.1
AT5G42720
Glycosyl hydrolase family 17 protein
Chr3_-_18834834 3.18 AT3G50685.1
AT3G50685
anti-muellerian hormone type-2 receptor
Chr5_-_24728244 3.17 AT5G61480.1
PXY
Leucine-rich repeat protein kinase family protein
Chr3_+_3011780 3.17 AT3G09820.1
ADK1
adenosine kinase 1
Chr2_-_13864596 3.16 AT2G32690.2
AT2G32690.3
AT2G32690.5
AT2G32690.4
AT2G32690.1
GRP23
glycine-rich protein 23
Chr1_+_18802552 3.15 AT1G50732.1
AT1G50732
transmembrane protein
Chr1_-_17015497 3.15 AT1G45010.2
AT1G45010.3
AT1G45010.4
AT1G45010.1
AT1G45010
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Chr4_+_17986384 3.13 AT4G38430.1
ROPGEF1
rho guanyl-nucleotide exchange factor 1
Chr4_-_14453966 3.12 AT4G29360.2
AT4G29360.1
AT4G29360
O-Glycosyl hydrolases family 17 protein
Chr4_+_7758275 3.09 AT4G13340.1
LRX3
Leucine-rich repeat (LRR) family protein
Chr2_+_16775424 3.05 AT2G40150.1
TBL28
TRICHOME BIREFRINGENCE-LIKE 28
Chr5_-_4986377 3.04 AT5G15350.1
ENODL17
early nodulin-like protein 17
Chr1_-_8501542 3.04 AT1G24020.1
MLP423
MLP-like protein 423
Chr5_+_24667873 3.03 AT5G61350.1
AT5G61350
Protein kinase superfamily protein
Chr1_-_7040231 3.00 AT1G20330.1
SMT2
sterol methyltransferase 2
Chr3_+_5267063 2.98 AT3G15548.1
AT3G15550.1
AT3G15548
AT3G15550
transmembrane protein
trichohyalin
Chr5_+_6387735 2.96 AT5G19090.5
AT5G19090
Heavy metal transport/detoxification superfamily protein
Chr5_-_22988092 2.94 AT5G56850.3
AT5G56850.1
AT5G56850.2
AT5G56850.4
AT5G56850
hypothetical protein
Chr5_-_22515458 2.93 AT5G55570.2
AT5G55570.1
AT5G55570
transmembrane protein
Chr5_+_25016860 2.93 AT5G62280.1
AT5G62280
DUF1442 family protein (DUF1442)
Chr1_-_1768837 2.93 AT1G05850.2
AT1G05850.1
POM1
Chitinase family protein
Chr2_+_10072057 2.91 AT2G23690.1
AT2G23690
HTH-type transcriptional regulator
Chr1_-_8502065 2.90 AT1G24020.2
MLP423
MLP-like protein 423
Chr2_-_14477520 2.90 AT2G34300.1
AT2G34300.3
AT2G34300
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_565801 2.89 AT3G02640.1
AT3G02640
transmembrane protein
Chr5_+_17697842 2.88 AT5G43990.4
AT5G43990.10
AT5G43990.7
AT5G43990.6
AT5G43990.1
AT5G43990.11
AT5G43990.9
AT5G43990.8
AT5G43990.17
AT5G43990.13
AT5G43990.12
AT5G43990.15
AT5G43990.16
AT5G43990.14
AT5G43990.3
AT5G43990.2
SUVR2
SET-domain containing protein lysine methyltransferase family protein
Chr5_-_25258704 2.87 AT5G62940.1
HCA2
Dof-type zinc finger DNA-binding family protein
Chr3_-_427095 2.86 AT3G02250.1
AT3G02250
O-fucosyltransferase family protein
Chr5_-_26845294 2.82 AT5G67280.1
RLK
receptor-like kinase
Chr3_-_7434743 2.82 AT3G21190.1
MSR1
O-fucosyltransferase family protein
Chr5_-_17185032 2.80 AT5G42860.1
AT5G42860
late embryogenesis abundant protein, group 2
Chr1_+_19879405 2.79 AT1G53300.1
TTL1
tetratricopetide-repeat thioredoxin-like 1
Chr4_-_8016582 2.78 AT4G13840.1
AT4G13840
HXXXD-type acyl-transferase family protein
Chr3_-_9346424 2.75 AT3G25670.1
AT3G25670
Leucine-rich repeat (LRR) family protein
Chr1_-_29396105 2.75 AT1G78120.1
AT1G78120.2
TPR12
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_7680390 2.74 AT1G21880.2
AT1G21880.1
LYM1
lysm domain GPI-anchored protein 1 precursor
Chr2_-_11021903 2.71 AT2G25830.1
AT2G25830
YebC-like protein
Chr1_+_21241579 2.65 AT1G56670.1
AT1G56670.2
AT1G56670
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_+_4608745 2.63 AT5G14280.1
AT5G14280
DNA-binding storekeeper-like protein
Chr5_-_22987509 2.63 AT5G56850.6
AT5G56850.7
AT5G56850
hypothetical protein
Chr1_+_195812 2.62 AT1G01540.1
AT1G01540
Protein kinase superfamily protein
Chr4_-_11785937 2.62 AT4G22290.1
AT4G22290
Ubiquitin-specific protease family C19-related protein
Chr1_+_195645 2.62 AT1G01540.2
AT1G01540
Protein kinase superfamily protein
Chr2_-_14477265 2.60 AT2G34300.2
AT2G34300
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_-_18378634 2.55 AT1G49650.1
AT1G49650
alpha/beta-Hydrolases superfamily protein
Chr4_+_8244053 2.54 AT4G14330.1
AT4G14330
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_-_9890875 2.53 AT1G28290.2
AT1G28290.1
AGP31
arabinogalactan protein 31
Chr4_+_15779911 2.52 AT4G32710.1
PERK14
Protein kinase superfamily protein
Chr1_-_10399873 2.51 AT1G29720.1
AT1G29720
Leucine-rich repeat transmembrane protein kinase
Chr2_-_18630428 2.50 AT2G45190.2
AFO
Plant-specific transcription factor YABBY family protein
Chr3_+_7280792 2.49 AT3G20820.1
AT3G20820
Leucine-rich repeat (LRR) family protein
Chr2_-_7130729 2.49 AT2G16440.1
MCM4
Minichromosome maintenance (MCM2/3/5) family protein
Chr2_-_18630779 2.48 AT2G45190.1
AFO
Plant-specific transcription factor YABBY family protein
Chr1_+_19812087 2.47 AT1G53163.1
AT1G53163
membrane-associated kinase regulator
Chr3_-_18817405 2.47 AT3G50660.1
AT3G50660.2
DWF4
Cytochrome P450 superfamily protein
Chr5_-_22564587 2.46 AT5G55740.1
CRR21
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_5935038 2.45 AT5G17920.1
AT5G17920.2
ATMS1
Cobalamin-independent synthase family protein
Chr3_-_21805335 2.44 AT3G59010.1
PME61
pectin methylesterase 61
Chr5_-_19639529 2.43 AT5G48460.1
AT5G48460
Actin binding Calponin homology (CH) domain-containing protein
Chr2_-_15560755 2.43 AT2G37040.1
PAL1
PHE ammonia lyase 1
Chr5_+_15213593 2.43 AT5G38120.2
AT5G38120.1
AT5G38120.3
AT5G38120.4
4CL8
AMP-dependent synthetase and ligase family protein
Chr3_-_4142548 2.41 AT3G12970.1
AT3G12970
serine/arginine repetitive matrix-like protein
Chr5_-_6184038 2.41 AT5G18600.1
AT5G18600
Thioredoxin superfamily protein
Chr1_-_1437763 2.41 AT1G05020.1
AT1G05020
ENTH/ANTH/VHS superfamily protein
Chr5_+_2446669 2.40 AT5G07690.1
MYB29
myb domain protein 29
Chr1_+_95935 2.40 AT1G01225.1
AT1G01225
NC domain-containing protein-like protein
Chr5_-_23946430 2.39 AT5G59360.1
AT5G59360
hypothetical protein
Chr4_-_6260259 2.39 AT4G09990.1
GXM2
glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
Chr3_+_6797471 2.39 AT3G19570.2
AT3G19570.3
AT3G19570.4
AT3G19570.1
SCO3
SNOWY COTYLEDON protein (DUF566)
Chr3_+_2534776 2.37 AT3G07960.1
AT3G07960.3
AT3G07960.2
AT3G07960.4
PIP5K6
Phosphatidylinositol-4-phosphate 5-kinase family protein
Chr2_+_8063023 2.36 AT2G18570.1
AT2G18570
UDP-Glycosyltransferase superfamily protein
Chr3_-_18882172 2.36 AT3G50790.2
AT3G50790.1
AT3G50790
esterase/lipase/thioesterase family protein
Chr5_-_24987811 2.35 AT5G62210.1
AT5G62210
Embryo-specific protein 3, (ATS3)
Chr3_-_2137641 2.34 AT3G06770.2
AT3G06770
Pectin lyase-like superfamily protein
Chr5_-_22987029 2.33 AT5G56850.8
AT5G56850
hypothetical protein
Chr3_-_5954091 2.33 AT3G17390.1
MTO3
S-adenosylmethionine synthetase family protein
Chr1_-_224351 2.33 AT1G01610.1
GPAT4
glycerol-3-phosphate acyltransferase 4
Chr1_-_10326848 2.32 AT1G29530.1
AT1G29530
hypothetical protein
Chr3_-_8554839 2.30 AT3G23740.1
AT3G23740
hypothetical protein
Chr4_+_1329548 2.28 AT4G03010.1
AT4G03010
RNI-like superfamily protein
Chr5_-_22987194 2.27 AT5G56850.5
AT5G56850
hypothetical protein
Chr5_-_305912 2.26 AT5G01790.1
AT5G01790
hypothetical protein
Chr4_-_17835017 2.26 AT4G37930.1
SHM1
serine transhydroxymethyltransferase 1
Chr5_-_17755742 2.26 AT5G44110.2
AT5G44110.4
AT5G44110.3
AT5G44110.1
ABCI21
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_-_19328940 2.25 AT5G47700.2
AT5G47700.1
AT5G47700
60S acidic ribosomal protein family

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G06746

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 6.4 GO:0080094 response to trehalose-6-phosphate(GO:0080094)
1.5 4.5 GO:0010198 synergid death(GO:0010198)
1.5 6.0 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
1.2 5.0 GO:0030203 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
1.1 8.8 GO:0043489 RNA stabilization(GO:0043489)
1.0 3.1 GO:0045857 regulation of molecular function, epigenetic(GO:0040030) negative regulation of molecular function, epigenetic(GO:0045857)
1.0 5.0 GO:0010450 inflorescence meristem growth(GO:0010450)
0.9 6.0 GO:0010067 procambium histogenesis(GO:0010067)
0.9 1.7 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
0.8 3.3 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.8 3.2 GO:0080175 phragmoplast microtubule organization(GO:0080175)
0.8 4.0 GO:0005980 glycogen catabolic process(GO:0005980)
0.7 5.1 GO:0009772 photosynthetic electron transport in photosystem II(GO:0009772)
0.7 2.2 GO:0010447 response to acidic pH(GO:0010447)
0.7 2.1 GO:0060236 regulation of mitotic spindle organization(GO:0060236) regulation of spindle organization(GO:0090224)
0.7 2.0 GO:0001736 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.7 4.7 GO:1902969 mitotic DNA replication(GO:1902969)
0.7 2.7 GO:0044380 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.7 8.5 GO:0009554 megasporogenesis(GO:0009554)
0.6 3.2 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.6 2.4 GO:0051574 positive regulation of histone H3-K9 methylation(GO:0051574)
0.6 11.0 GO:0006949 syncytium formation(GO:0006949)
0.6 1.7 GO:0046085 inosine catabolic process(GO:0006148) adenosine metabolic process(GO:0046085) inosine metabolic process(GO:0046102)
0.6 5.1 GO:0009819 drought recovery(GO:0009819)
0.6 1.7 GO:0006057 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506) response to cobalt ion(GO:0032025)
0.5 3.3 GO:0010236 plastoquinone biosynthetic process(GO:0010236)
0.5 3.8 GO:0043446 cellular alkane metabolic process(GO:0043446)
0.5 3.1 GO:0051098 regulation of binding(GO:0051098)
0.5 8.8 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.5 2.0 GO:0042450 arginine biosynthetic process via ornithine(GO:0042450)
0.5 2.9 GO:0097502 mannosylation(GO:0097502)
0.5 1.8 GO:0050993 dimethylallyl diphosphate biosynthetic process(GO:0050992) dimethylallyl diphosphate metabolic process(GO:0050993)
0.5 0.9 GO:0032411 positive regulation of transporter activity(GO:0032411) positive regulation of ion transmembrane transporter activity(GO:0032414) positive regulation of anion channel activity(GO:1901529) positive regulation of anion transport(GO:1903793) positive regulation of anion transmembrane transport(GO:1903961)
0.4 4.9 GO:0010158 abaxial cell fate specification(GO:0010158)
0.4 2.2 GO:0007266 Rho protein signal transduction(GO:0007266)
0.4 1.7 GO:0006808 regulation of nitrogen utilization(GO:0006808)
0.4 3.9 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.4 2.2 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.4 2.1 GO:0042549 photosystem II stabilization(GO:0042549)
0.4 1.3 GO:1902446 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.4 25.5 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.4 1.2 GO:0051211 nucleolus organization(GO:0007000) anisotropic cell growth(GO:0051211)
0.4 1.2 GO:0017145 stem cell division(GO:0017145)
0.4 4.0 GO:0010358 leaf shaping(GO:0010358)
0.4 0.4 GO:0033478 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.4 1.5 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.4 2.2 GO:0045038 protein import into chloroplast thylakoid membrane(GO:0045038)
0.4 3.6 GO:0009957 epidermal cell fate specification(GO:0009957)
0.4 29.9 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.4 4.2 GO:0032544 plastid translation(GO:0032544)
0.3 4.5 GO:0010315 auxin efflux(GO:0010315)
0.3 2.0 GO:0009769 photosynthesis, light harvesting in photosystem II(GO:0009769)
0.3 2.7 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.3 2.3 GO:1904482 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) glycine decarboxylation via glycine cleavage system(GO:0019464) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.3 3.0 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.3 4.5 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.3 1.2 GO:0016098 monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099)
0.3 2.2 GO:0009942 longitudinal axis specification(GO:0009942)
0.3 4.4 GO:0010078 maintenance of root meristem identity(GO:0010078)
0.3 1.1 GO:0071836 nectar secretion(GO:0071836)
0.3 1.9 GO:0032890 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.3 3.2 GO:0080144 amino acid homeostasis(GO:0080144)
0.3 0.8 GO:0010500 transmitting tissue development(GO:0010500) carpel formation(GO:0048462)
0.3 1.6 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.3 1.5 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.3 1.3 GO:0051325 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.3 2.3 GO:0009799 specification of symmetry(GO:0009799)
0.2 1.2 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.2 1.6 GO:2000904 regulation of starch metabolic process(GO:2000904)
0.2 5.9 GO:0009959 negative gravitropism(GO:0009959)
0.2 1.3 GO:0016572 histone phosphorylation(GO:0016572)
0.2 1.3 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.2 2.4 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.2 5.2 GO:0009294 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.2 2.1 GO:0080183 response to photooxidative stress(GO:0080183)
0.2 7.3 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.2 0.6 GO:0001934 positive regulation of protein phosphorylation(GO:0001934)
0.2 3.9 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.2 1.2 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.2 3.5 GO:0033674 positive regulation of kinase activity(GO:0033674)
0.2 4.9 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.2 1.8 GO:0080142 regulation of salicylic acid biosynthetic process(GO:0080142)
0.2 0.6 GO:0010338 leaf formation(GO:0010338)
0.2 3.2 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.2 1.0 GO:0070525 tRNA threonylcarbamoyladenosine metabolic process(GO:0070525)
0.2 1.9 GO:0043171 peptide catabolic process(GO:0043171)
0.2 7.1 GO:0045489 pectin biosynthetic process(GO:0045489)
0.2 0.4 GO:0050687 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.2 1.1 GO:0090057 root radial pattern formation(GO:0090057)
0.2 1.8 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.2 0.5 GO:0046166 glyceraldehyde-3-phosphate biosynthetic process(GO:0046166)
0.2 5.4 GO:0043622 cortical microtubule organization(GO:0043622)
0.2 4.6 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.2 15.3 GO:0045490 pectin catabolic process(GO:0045490)
0.2 1.2 GO:0048446 petal morphogenesis(GO:0048446)
0.2 4.8 GO:0030050 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.2 1.8 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.2 0.8 GO:1903792 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.2 0.9 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.1 1.5 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.1 0.7 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.1 1.1 GO:0006183 GTP biosynthetic process(GO:0006183)
0.1 1.0 GO:0015689 molybdate ion transport(GO:0015689)
0.1 5.6 GO:0009664 plant-type cell wall organization(GO:0009664)
0.1 1.1 GO:0070592 cell wall polysaccharide biosynthetic process(GO:0070592)
0.1 0.9 GO:1900908 regulation of ethylene biosynthetic process(GO:0010364) regulation of sulfur amino acid metabolic process(GO:0031335) regulation of olefin metabolic process(GO:1900908) regulation of olefin biosynthetic process(GO:1900911)
0.1 2.1 GO:0009704 de-etiolation(GO:0009704)
0.1 3.1 GO:0043572 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.1 1.3 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.1 1.3 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.1 3.0 GO:0010091 trichome branching(GO:0010091)
0.1 2.2 GO:0050821 protein stabilization(GO:0050821)
0.1 1.9 GO:0005986 sucrose biosynthetic process(GO:0005986)
0.1 1.6 GO:0070475 rRNA base methylation(GO:0070475)
0.1 0.6 GO:0007142 male meiosis II(GO:0007142)
0.1 2.4 GO:0006743 ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744)
0.1 2.7 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.1 1.1 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.1 1.6 GO:0010274 hydrotropism(GO:0010274)
0.1 9.1 GO:0009627 systemic acquired resistance(GO:0009627)
0.1 5.0 GO:0019759 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.1 0.7 GO:0043486 histone exchange(GO:0043486)
0.1 3.0 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.1 4.8 GO:0016485 protein processing(GO:0016485)
0.1 2.0 GO:0009086 methionine biosynthetic process(GO:0009086)
0.1 0.9 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.1 1.4 GO:0009299 mRNA transcription(GO:0009299)
0.1 0.9 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.1 0.9 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.1 1.2 GO:0000105 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.1 2.5 GO:0051225 spindle assembly(GO:0051225)
0.1 0.4 GO:0015940 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.1 1.4 GO:0031425 chloroplast RNA processing(GO:0031425)
0.1 0.9 GO:0010262 somatic embryogenesis(GO:0010262)
0.1 1.8 GO:0010227 floral organ abscission(GO:0010227)
0.1 2.7 GO:0045036 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.1 3.9 GO:0006099 tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101)
0.1 1.1 GO:0071324 cellular response to disaccharide stimulus(GO:0071324) cellular response to sucrose stimulus(GO:0071329)
0.1 0.7 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.1 3.4 GO:0006289 nucleotide-excision repair(GO:0006289)
0.1 1.7 GO:0006722 triterpenoid metabolic process(GO:0006722)
0.1 1.7 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.1 2.2 GO:0006334 nucleosome assembly(GO:0006334)
0.1 2.3 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.1 2.5 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.1 0.3 GO:2000082 regulation of L-ascorbic acid biosynthetic process(GO:2000082)
0.1 1.2 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.1 0.5 GO:0031333 negative regulation of protein complex assembly(GO:0031333)
0.1 0.5 GO:0010230 alternative respiration(GO:0010230)
0.1 0.9 GO:0006538 glutamate catabolic process(GO:0006538)
0.1 0.8 GO:0051554 flavone metabolic process(GO:0051552) flavone biosynthetic process(GO:0051553) flavonol metabolic process(GO:0051554) flavonol biosynthetic process(GO:0051555)
0.1 0.7 GO:0018026 peptidyl-lysine monomethylation(GO:0018026)
0.1 0.7 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.1 1.7 GO:0010143 cutin biosynthetic process(GO:0010143)
0.1 3.4 GO:0009567 fertilization(GO:0009566) double fertilization forming a zygote and endosperm(GO:0009567)
0.1 2.3 GO:0044772 mitotic cell cycle phase transition(GO:0044772)
0.0 2.9 GO:0007018 microtubule-based movement(GO:0007018)
0.0 0.3 GO:0080117 secondary growth(GO:0080117)
0.0 2.0 GO:0009690 cytokinin metabolic process(GO:0009690)
0.0 0.4 GO:0048826 cotyledon morphogenesis(GO:0048826)
0.0 1.4 GO:0000741 karyogamy(GO:0000741) polar nucleus fusion(GO:0010197)
0.0 2.0 GO:0009832 plant-type cell wall biogenesis(GO:0009832)
0.0 1.5 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 0.5 GO:0010021 amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.0 0.8 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.0 1.1 GO:0010089 xylem development(GO:0010089)
0.0 0.7 GO:0009306 protein secretion(GO:0009306)
0.0 0.2 GO:0006526 arginine biosynthetic process(GO:0006526)
0.0 0.1 GO:0043181 cellular sodium ion homeostasis(GO:0006883) vacuolar sequestering(GO:0043181)
0.0 1.2 GO:0009789 positive regulation of abscisic acid-activated signaling pathway(GO:0009789)
0.0 0.3 GO:0006542 glutamine biosynthetic process(GO:0006542)
0.0 2.6 GO:0016036 cellular response to phosphate starvation(GO:0016036)
0.0 1.3 GO:0016556 mRNA modification(GO:0016556)
0.0 1.1 GO:0009851 auxin biosynthetic process(GO:0009851)
0.0 1.2 GO:0016128 phytosteroid metabolic process(GO:0016128) brassinosteroid metabolic process(GO:0016131)
0.0 0.1 GO:1900036 positive regulation of cellular response to heat(GO:1900036)
0.0 1.6 GO:0090487 toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487)
0.0 3.5 GO:0080167 response to karrikin(GO:0080167)
0.0 0.8 GO:0009686 gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686)
0.0 3.8 GO:0000278 mitotic cell cycle(GO:0000278)
0.0 2.0 GO:0048544 cell recognition(GO:0008037) recognition of pollen(GO:0048544)
0.0 0.6 GO:0000162 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.0 1.2 GO:0009226 nucleotide-sugar biosynthetic process(GO:0009226)
0.0 0.2 GO:0006216 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.5 GO:0043467 regulation of generation of precursor metabolites and energy(GO:0043467)
0.0 1.3 GO:0006414 translational elongation(GO:0006414)
0.0 0.3 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 1.3 GO:0035825 reciprocal meiotic recombination(GO:0007131) reciprocal DNA recombination(GO:0035825)
0.0 2.9 GO:0046777 protein autophosphorylation(GO:0046777)
0.0 0.5 GO:0010252 auxin homeostasis(GO:0010252)
0.0 0.4 GO:0045787 positive regulation of cell cycle(GO:0045787)
0.0 0.6 GO:0009960 endosperm development(GO:0009960)
0.0 0.3 GO:0060688 regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032)
0.0 0.3 GO:0030522 blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.0 1.1 GO:0002181 cytoplasmic translation(GO:0002181)
0.0 0.8 GO:0009911 positive regulation of flower development(GO:0009911)
0.0 0.9 GO:0009853 photorespiration(GO:0009853)
0.0 0.6 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.0 0.7 GO:0006487 protein N-linked glycosylation(GO:0006487)
0.0 0.7 GO:0009846 pollen germination(GO:0009846)
0.0 1.6 GO:0018105 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.0 0.9 GO:0009742 brassinosteroid mediated signaling pathway(GO:0009742) steroid hormone mediated signaling pathway(GO:0043401) response to steroid hormone(GO:0048545) cellular response to brassinosteroid stimulus(GO:0071367) cellular response to steroid hormone stimulus(GO:0071383)
0.0 0.9 GO:0007267 cell-cell signaling(GO:0007267)
0.0 0.2 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.5 GO:0045292 mRNA cis splicing, via spliceosome(GO:0045292)
0.0 0.4 GO:0000470 maturation of LSU-rRNA(GO:0000470)
0.0 1.5 GO:0032259 methylation(GO:0032259)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 1.5 GO:0016328 lateral plasma membrane(GO:0016328)
1.1 3.3 GO:0043668 pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
0.7 3.0 GO:0010330 cellulose synthase complex(GO:0010330)
0.6 1.8 GO:0070382 exocytic vesicle(GO:0070382)
0.5 1.5 GO:1990752 microtubule plus-end(GO:0035371) microtubule end(GO:1990752)
0.5 4.6 GO:0042555 MCM complex(GO:0042555)
0.4 4.8 GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)(GO:0045261)
0.4 5.1 GO:0005880 nuclear microtubule(GO:0005880)
0.4 2.9 GO:0032153 cell division site(GO:0032153)
0.3 1.3 GO:0032133 chromosome passenger complex(GO:0032133)
0.3 1.5 GO:0009897 external side of plasma membrane(GO:0009897)
0.3 3.1 GO:0031519 PcG protein complex(GO:0031519)
0.3 41.8 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.3 5.7 GO:0016324 apical plasma membrane(GO:0016324)
0.3 1.8 GO:0030139 endocytic vesicle(GO:0030139)
0.2 2.8 GO:0009986 cell surface(GO:0009986)
0.2 9.3 GO:0010319 stromule(GO:0010319)
0.2 43.8 GO:0009505 plant-type cell wall(GO:0009505)
0.2 2.2 GO:0035861 site of double-strand break(GO:0035861)
0.2 54.1 GO:0048046 apoplast(GO:0048046)
0.2 8.8 GO:0009543 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.2 1.2 GO:0005828 condensed nuclear chromosome kinetochore(GO:0000778) kinetochore microtubule(GO:0005828)
0.2 9.1 GO:0005797 Golgi medial cisterna(GO:0005797)
0.2 0.5 GO:0032299 ribonuclease H2 complex(GO:0032299)
0.2 1.3 GO:0005784 Sec61 translocon complex(GO:0005784)
0.1 2.2 GO:0048500 signal recognition particle(GO:0048500)
0.1 0.7 GO:0000812 Swr1 complex(GO:0000812)
0.1 1.6 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.1 25.9 GO:0009535 chloroplast thylakoid membrane(GO:0009535)
0.1 8.2 GO:0000138 Golgi trans cisterna(GO:0000138)
0.1 7.2 GO:0005874 microtubule(GO:0005874)
0.1 9.7 GO:0031225 anchored component of membrane(GO:0031225)
0.1 7.0 GO:0005615 extracellular space(GO:0005615)
0.1 5.5 GO:0009534 chloroplast thylakoid(GO:0009534)
0.1 1.1 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.1 2.6 GO:0042644 chloroplast nucleoid(GO:0042644)
0.1 19.3 GO:0030312 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.1 1.2 GO:0016459 myosin complex(GO:0016459)
0.1 7.9 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.1 2.4 GO:0009504 cell plate(GO:0009504)
0.1 1.3 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.1 1.4 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.1 0.4 GO:0016281 eukaryotic translation initiation factor 4F complex(GO:0016281)
0.1 1.3 GO:0005875 microtubule associated complex(GO:0005875)
0.0 1.3 GO:0005680 anaphase-promoting complex(GO:0005680)
0.0 99.3 GO:0005576 extracellular region(GO:0005576)
0.0 1.7 GO:0009706 chloroplast inner membrane(GO:0009706)
0.0 0.4 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.0 1.7 GO:0090406 pollen tube(GO:0090406)
0.0 0.8 GO:0031306 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.0 0.5 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)
0.0 0.3 GO:0005801 cis-Golgi network(GO:0005801)
0.0 1.4 GO:0005856 cytoskeleton(GO:0005856)
0.0 1.3 GO:0015629 actin cytoskeleton(GO:0015629)
0.0 5.3 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.0 2.2 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)
0.0 1.3 GO:0016607 nuclear speck(GO:0016607)
0.0 1.0 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 0.1 GO:0031965 nuclear membrane(GO:0031965)
0.0 0.1 GO:0008540 proteasome regulatory particle, base subcomplex(GO:0008540)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.2 6.7 GO:0004013 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
1.5 2.9 GO:0051753 beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753)
1.3 6.4 GO:0004001 adenosine kinase activity(GO:0004001)
1.1 4.4 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
1.1 4.3 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
1.0 5.0 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
1.0 4.0 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.9 1.7 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.8 26.5 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.7 2.2 GO:1990518 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.7 3.7 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.6 2.5 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.6 2.4 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.6 1.8 GO:0004452 isopentenyl-diphosphate delta-isomerase activity(GO:0004452)
0.6 1.7 GO:1990465 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.6 1.7 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.6 1.1 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.5 6.4 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.5 4.8 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.5 1.5 GO:0051010 microtubule plus-end binding(GO:0051010)
0.5 2.4 GO:0042085 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.5 1.9 GO:0047517 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) 1,4-beta-D-xylan synthase activity(GO:0047517)
0.5 14.2 GO:0008266 poly(U) RNA binding(GO:0008266)
0.5 3.6 GO:0008083 growth factor activity(GO:0008083)
0.4 1.8 GO:0070182 DNA polymerase binding(GO:0070182)
0.4 2.2 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.4 1.7 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.4 8.4 GO:0005199 structural constituent of cell wall(GO:0005199)
0.4 1.2 GO:0004359 glutaminase activity(GO:0004359)
0.4 3.0 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.4 9.1 GO:0004565 beta-galactosidase activity(GO:0004565)
0.4 1.8 GO:0008430 selenium binding(GO:0008430)
0.4 10.3 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.4 3.2 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.3 1.3 GO:0035175 histone serine kinase activity(GO:0035174) histone kinase activity (H3-S10 specific)(GO:0035175)
0.3 1.6 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.3 12.8 GO:0016759 cellulose synthase activity(GO:0016759)
0.3 1.3 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.3 2.9 GO:0004096 catalase activity(GO:0004096)
0.3 8.5 GO:0008810 cellulase activity(GO:0008810)
0.3 1.5 GO:0034511 U3 snoRNA binding(GO:0034511)
0.3 3.5 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329) auxin transmembrane transporter activity(GO:0080161)
0.3 5.0 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.2 1.5 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.2 2.2 GO:0017048 Rho GTPase binding(GO:0017048)
0.2 1.9 GO:0050307 sucrose-phosphate phosphatase activity(GO:0050307)
0.2 2.3 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.2 2.0 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.2 1.5 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.2 1.7 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.2 1.5 GO:0016681 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.2 2.1 GO:0051920 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.2 0.6 GO:0032947 MAP-kinase scaffold activity(GO:0005078) protein kinase C binding(GO:0005080) protein complex scaffold(GO:0032947) signaling adaptor activity(GO:0035591)
0.2 13.7 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.2 8.1 GO:0045735 nutrient reservoir activity(GO:0045735)
0.2 2.1 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.2 7.8 GO:0018024 histone-lysine N-methyltransferase activity(GO:0018024)
0.2 4.5 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.2 1.8 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.2 2.1 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.2 1.1 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.2 0.5 GO:0004807 triose-phosphate isomerase activity(GO:0004807)
0.2 2.2 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.2 1.2 GO:0048487 beta-tubulin binding(GO:0048487)
0.2 1.4 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.2 3.5 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.2 2.4 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.2 2.4 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.2 0.8 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.2 1.0 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.2 1.8 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.2 4.8 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.2 0.8 GO:0000048 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.2 3.5 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.2 4.2 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.2 2.0 GO:0016774 phosphotransferase activity, carboxyl group as acceptor(GO:0016774)
0.2 0.9 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.2 1.2 GO:0019158 glucokinase activity(GO:0004340) glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.1 3.7 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.1 1.0 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.1 2.4 GO:0003688 DNA replication origin binding(GO:0003688)
0.1 1.1 GO:0008515 sucrose transmembrane transporter activity(GO:0008515)
0.1 7.3 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.1 0.4 GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity(GO:0003864)
0.1 4.4 GO:0005179 hormone activity(GO:0005179)
0.1 0.8 GO:0004449 isocitrate dehydrogenase (NAD+) activity(GO:0004449)
0.1 0.3 GO:0052736 beta-glucanase activity(GO:0052736)
0.1 0.4 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.1 4.1 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.1 7.3 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.1 12.3 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.1 0.9 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.1 4.6 GO:0008171 O-methyltransferase activity(GO:0008171)
0.1 0.3 GO:0044540 L-cystine L-cysteine-lyase (deaminating)(GO:0044540)
0.1 0.7 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.1 13.8 GO:0008017 microtubule binding(GO:0008017)
0.1 0.5 GO:0004049 anthranilate synthase activity(GO:0004049)
0.1 1.1 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 3.7 GO:0043022 ribosome binding(GO:0043022)
0.1 2.0 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.1 1.1 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.1 5.0 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.1 0.9 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.1 4.6 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.1 1.2 GO:0008252 nucleotidase activity(GO:0008252)
0.1 6.2 GO:0004650 polygalacturonase activity(GO:0004650)
0.1 0.4 GO:0072328 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.1 0.8 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.8 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.1 0.2 GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity(GO:0004042)
0.1 1.0 GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity(GO:0015165)
0.1 2.0 GO:0016168 chlorophyll binding(GO:0016168)
0.1 1.5 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.1 1.5 GO:0060090 binding, bridging(GO:0060090)
0.1 2.2 GO:0000049 tRNA binding(GO:0000049)
0.1 0.7 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.1 1.2 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.1 1.4 GO:0043295 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.1 1.2 GO:0042300 beta-amyrin synthase activity(GO:0042300)
0.1 6.6 GO:0016209 antioxidant activity(GO:0016209)
0.1 0.6 GO:1904680 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.1 9.8 GO:0008168 methyltransferase activity(GO:0008168)
0.1 0.7 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.1 10.7 GO:0005507 copper ion binding(GO:0005507)
0.1 0.5 GO:0009011 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.1 1.4 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.1 0.8 GO:0070567 cytidylyltransferase activity(GO:0070567)
0.1 3.2 GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706)
0.1 0.5 GO:0009916 alternative oxidase activity(GO:0009916)
0.1 0.2 GO:0045140 inositol phosphoceramide synthase activity(GO:0045140)
0.1 0.8 GO:0008097 5S rRNA binding(GO:0008097)
0.1 0.8 GO:0016872 intramolecular lyase activity(GO:0016872)
0.0 0.6 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.0 1.2 GO:0003684 damaged DNA binding(GO:0003684)
0.0 0.5 GO:0004467 long-chain fatty acid-CoA ligase activity(GO:0004467) decanoate--CoA ligase activity(GO:0102391)
0.0 0.2 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.5 GO:0043878 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity(GO:0043878)
0.0 0.7 GO:0000175 3'-5'-exoribonuclease activity(GO:0000175)
0.0 1.5 GO:0016881 acid-amino acid ligase activity(GO:0016881)
0.0 2.8 GO:0003697 single-stranded DNA binding(GO:0003697)
0.0 0.1 GO:0036402 proteasome-activating ATPase activity(GO:0036402)
0.0 0.8 GO:0008146 sulfotransferase activity(GO:0008146)
0.0 1.3 GO:0008408 3'-5' exonuclease activity(GO:0008408)
0.0 0.4 GO:0051537 2 iron, 2 sulfur cluster binding(GO:0051537)
0.0 1.9 GO:0001871 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.0 0.4 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.0 9.4 GO:0042802 identical protein binding(GO:0042802)
0.0 0.2 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 1.6 GO:0010857 calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.0 0.1 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.0 0.1 GO:0004737 pyruvate decarboxylase activity(GO:0004737)
0.0 0.5 GO:0008308 voltage-gated anion channel activity(GO:0008308)
0.0 1.4 GO:0004185 serine-type carboxypeptidase activity(GO:0004185) serine-type exopeptidase activity(GO:0070008)
0.0 3.9 GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds(GO:0004553)
0.0 17.0 GO:0004672 protein kinase activity(GO:0004672)
0.0 0.3 GO:0061608 nuclear localization sequence binding(GO:0008139) nuclear import signal receptor activity(GO:0061608)
0.0 0.3 GO:0004743 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 0.1 GO:0052623 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.0 0.5 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 0.3 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 0.5 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.1 PID AURORA A PATHWAY Aurora A signaling
0.6 4.1 PID HES HEY PATHWAY Notch-mediated HES/HEY network
0.4 2.2 PID AP1 PATHWAY AP-1 transcription factor network
0.4 2.5 PID CMYB PATHWAY C-MYB transcription factor network
0.1 1.4 PID ATR PATHWAY ATR signaling pathway
0.1 0.9 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.1 0.3 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 4.6 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.5 3.2 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.5 1.5 REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC
0.4 2.2 REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND Genes involved in Removal of the Flap Intermediate from the C-strand
0.3 0.9 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.2 3.5 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.0 0.2 REACTOME CITRIC ACID CYCLE TCA CYCLE Genes involved in Citric acid cycle (TCA cycle)