Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT4G01550
Z-value: 1.34
Transcription factors associated with AT4G01550
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G01550
|
AT4G01550 | NAC domain containing protein 69 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC069 | arTal_v1_Chr4_-_676411_676445 | -0.86 | 5.2e-09 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 6.10 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 5.96 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 5.96 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 5.91 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 5.88 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 5.80 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 5.48 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr2_-_17648945_17649062 Show fit | 4.97 |
AT2G42380.1
AT2G42380.4 AT2G42380.3 AT2G42380.2 AT2G42380.5 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 4.94 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 4.69 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G01550
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 23.6 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.2 | 20.1 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.2 | 11.9 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.6 | 11.4 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.6 | 11.1 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.4 | 10.1 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.9 | 9.4 | GO:0010196 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.1 | 8.3 | GO:0009657 | plastid organization(GO:0009657) |
| 0.5 | 7.9 | GO:0046501 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
| 0.5 | 7.7 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 36.2 | GO:0005576 | extracellular region(GO:0005576) |
| 0.8 | 33.2 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 29.0 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.2 | 23.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 22.1 | GO:0031976 | plastid thylakoid(GO:0031976) |
| 0.8 | 20.3 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.1 | 15.8 | GO:0048046 | apoplast(GO:0048046) |
| 1.5 | 13.5 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.3 | 9.2 | GO:0055028 | cortical microtubule(GO:0055028) |
| 0.4 | 8.3 | GO:0031012 | extracellular matrix(GO:0031012) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 22.2 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 16.7 | GO:0046983 | protein dimerization activity(GO:0046983) |
| 0.2 | 12.3 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.5 | 11.6 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.3 | 10.2 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.1 | 10.0 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.3 | 9.5 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 3.1 | 9.4 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.4 | 8.9 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 8.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.9 | 23.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.4 | 2.3 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.2 | 1.0 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.4 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.1 | 0.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.9 | 23.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 1.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 1.4 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.4 | 1.1 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.2 | 1.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.4 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
| 0.1 | 0.4 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.2 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.0 | 0.2 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |