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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G01280
Z-value: 0.93
Transcription factors associated with AT4G01280
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G01280
|
AT4G01280 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT4G01280 | arTal_v1_Chr4_+_535198_535241 | 0.22 | 2.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_6927736_6927736 Show fit | 1.79 |
AT1G19960.1
|
transcription factor |
|
| arTal_v1_Chr1_-_5133860_5133860 Show fit | 1.72 |
AT1G14880.1
|
PLANT CADMIUM RESISTANCE 1 |
|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 1.67 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr2_+_10856271_10856372 Show fit | 1.54 |
AT2G25510.1
AT2G25510.2 |
transmembrane protein |
|
| arTal_v1_Chr4_+_8294446_8294452 Show fit | 1.52 |
AT4G14400.2
AT4G14400.3 |
ankyrin repeat family protein |
|
| arTal_v1_Chr1_+_7949476_7949476 Show fit | 1.50 |
AT1G22500.1
|
RING/U-box superfamily protein |
|
| arTal_v1_Chr5_+_7718118_7718118 Show fit | 1.50 |
AT5G23020.1
|
2-isopropylmalate synthase 2 |
|
| arTal_v1_Chr4_+_8294165_8294165 Show fit | 1.38 |
AT4G14400.1
|
ankyrin repeat family protein |
|
| arTal_v1_Chr3_+_17268700_17268700 Show fit | 1.31 |
AT3G46900.1
|
copper transporter 2 |
|
| arTal_v1_Chr2_+_1966806_1966816 Show fit | 1.28 |
AT2G05380.1
AT2G05380.2 |
glycine-rich protein 3 short isoform |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G01280
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.8 | GO:1902290 | positive regulation of defense response to oomycetes(GO:1902290) |
| 0.2 | 2.5 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
| 0.1 | 2.5 | GO:0009269 | response to desiccation(GO:0009269) |
| 0.2 | 2.4 | GO:0010044 | response to aluminum ion(GO:0010044) |
| 0.2 | 2.2 | GO:0006878 | cellular copper ion homeostasis(GO:0006878) |
| 0.4 | 2.1 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.4 | 2.0 | GO:0033591 | response to L-ascorbic acid(GO:0033591) |
| 0.0 | 1.9 | GO:0010043 | response to zinc ion(GO:0010043) |
| 0.0 | 1.8 | GO:0009734 | auxin-activated signaling pathway(GO:0009734) |
| 0.1 | 1.6 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.7 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
| 0.1 | 2.8 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 2.4 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 2.3 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 2.2 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 1.5 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 1.2 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 1.1 | GO:0009504 | cell plate(GO:0009504) |
| 0.0 | 1.1 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 1.1 | GO:0016604 | nuclear body(GO:0016604) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.0 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 3.1 | GO:0020037 | heme binding(GO:0020037) |
| 0.0 | 3.1 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.4 | 2.8 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.0 | 2.7 | GO:0030246 | carbohydrate binding(GO:0030246) |
| 0.0 | 2.6 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.6 | 2.4 | GO:0003852 | 2-isopropylmalate synthase activity(GO:0003852) |
| 0.0 | 1.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 1.6 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 1.6 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 0.8 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.0 | 0.5 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.1 | 0.4 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.3 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.2 | PID ENDOTHELIN PATHWAY | Endothelins |
| 0.0 | 0.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.2 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.0 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.3 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.1 | 0.9 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.2 | 0.8 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.1 | 0.6 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 0.3 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 0.2 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.1 | 0.2 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
| 0.0 | 0.2 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.0 | 0.2 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.2 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |