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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G00730
Z-value: 5.83
Transcription factors associated with AT4G00730
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G00730
|
AT4G00730 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ANL2 | arTal_v1_Chr4_-_304508_304612 | -0.57 | 1.5e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 32.18 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 25.68 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 22.10 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 21.46 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 20.49 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 20.40 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 20.36 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 20.06 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 19.96 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr1_+_10375754_10375754 Show fit | 19.65 |
AT1G29670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G00730
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.6 | 103.9 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 1.1 | 88.4 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.9 | 74.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 2.2 | 62.2 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 2.4 | 55.2 | GO:0008544 | epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855) |
| 2.1 | 52.7 | GO:0042335 | cuticle development(GO:0042335) |
| 0.8 | 52.7 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 3.2 | 47.9 | GO:0030497 | fatty acid elongation(GO:0030497) |
| 1.4 | 47.0 | GO:0048825 | cotyledon development(GO:0048825) |
| 0.8 | 45.3 | GO:0007267 | cell-cell signaling(GO:0007267) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 694.6 | GO:0005576 | extracellular region(GO:0005576) |
| 1.2 | 183.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.5 | 149.0 | GO:0048046 | apoplast(GO:0048046) |
| 0.3 | 103.6 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.4 | 71.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 43.8 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.1 | 39.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 1.8 | 35.1 | GO:0009986 | cell surface(GO:0009986) |
| 0.6 | 30.7 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 3.1 | 27.8 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 99.9 | GO:0046983 | protein dimerization activity(GO:0046983) |
| 4.2 | 96.3 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 74.1 | GO:0004672 | protein kinase activity(GO:0004672) |
| 0.2 | 72.2 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 2.1 | 68.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.6 | 61.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.3 | 50.1 | GO:0043531 | ADP binding(GO:0043531) |
| 1.8 | 46.1 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.7 | 44.7 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 3.2 | 41.8 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 12.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 2.8 | 8.4 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 1.5 | 7.5 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 1.8 | 7.1 | PID P53 REGULATION PATHWAY | p53 pathway |
| 2.2 | 6.6 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 1.3 | 6.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.5 | 4.4 | NABA MATRISOME | Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins |
| 1.0 | 3.1 | PID LYMPH ANGIOGENESIS PATHWAY | VEGFR3 signaling in lymphatic endothelium |
| 0.5 | 1.1 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.3 | 0.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.7 | 8.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 1.3 | 6.6 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 2.2 | 6.5 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 1.2 | 4.6 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.9 | 4.4 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 1.3 | 3.8 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 1.2 | 3.7 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.7 | 3.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 1.0 | 3.1 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.9 | 2.7 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |