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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G00730

Z-value: 5.83

Transcription factors associated with AT4G00730

Gene Symbol Gene ID Gene Info
AT4G00730 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ANL2arTal_v1_Chr4_-_304508_304612-0.571.5e-03Click!

Activity profile of AT4G00730 motif

Sorted Z-values of AT4G00730 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_4312103 32.18 AT2G10940.2
AT2G10940.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_-_16950705 25.68 AT2G40610.1
expansin A8
Chr3_+_5556710 22.10 AT3G16370.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_-_4090857 21.46 AT1G12090.1
extensin-like protein
Chr4_+_18291218 20.49 AT4G39330.1
AT4G39330.2
cinnamyl alcohol dehydrogenase 9
Chr5_+_26298728 20.40 AT5G65730.1
xyloglucan endotransglucosylase/hydrolase 6
Chr4_-_7493080 20.36 AT4G12730.1
FASCICLIN-like arabinogalactan 2
Chr3_-_21523375 20.06 AT3G58120.2
AT3G58120.1
Basic-leucine zipper (bZIP) transcription factor family protein
Chr5_-_25343369 19.96 AT5G63180.1
Pectin lyase-like superfamily protein
Chr1_+_10375754 19.65 AT1G29670.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_+_10375599 19.44 AT1G29670.2
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_+_2763449 19.09 AT2G06850.1
AT2G06850.2
xyloglucan endotransglucosylase/hydrolase 4
Chr3_-_11013451 18.92 AT3G29030.1
expansin A5
Chr1_+_10371675 18.89 AT1G29660.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_+_17760865 18.89 AT5G44130.1
FASCICLIN-like arabinogalactan protein 13 precursor
Chr4_-_10391298 18.21 AT4G18970.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_-_10390991 18.06 AT4G18970.2
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_-_59215 17.95 AT1G01120.1
3-ketoacyl-CoA synthase 1
Chr3_+_17228642 17.93 AT3G46780.1
plastid transcriptionally active 16
Chr3_-_4008018 17.85 AT3G12610.1
Leucine-rich repeat (LRR) family protein
Chr4_-_176870 17.70 AT4G00400.1
glycerol-3-phosphate acyltransferase 8
Chr5_+_26767599 17.26 AT5G67070.1
ralf-like 34
Chr5_-_22560461 17.03 AT5G55730.2
AT5G55730.1
FASCICLIN-like arabinogalactan 1
Chr3_+_18046144 16.94 AT3G48720.1
HXXXD-type acyl-transferase family protein
Chr5_-_6976036 16.85 AT5G20630.1
germin 3
Chr2_-_1800472 16.72 AT2G05070.1
photosystem II light harvesting complex protein 2.2
Chr3_-_16448844 16.65 AT3G44990.1
xyloglucan endo-transglycosylase-related 8
Chr1_+_20614573 16.61 AT1G55260.1
AT1G55260.2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_+_18634041 16.44 AT5G45950.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_+_14215473 15.96 AT4G28780.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_-_8589754 15.90 AT3G23810.1
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr3_+_23345754 15.77 AT3G63200.1
PATATIN-like protein 9
Chr1_-_26711462 15.52 AT1G70830.4
AT1G70830.2
AT1G70830.1
AT1G70830.5
AT1G70830.3
MLP-like protein 28
Chr1_+_9740508 15.47 AT1G27950.1
glycosylphosphatidylinositol-anchored lipid protein transfer 1
Chr3_-_7796310 15.40 AT3G22120.1
AT3G22120.2
cell wall-plasma membrane linker protein
Chr2_-_15474717 15.29 AT2G36870.2
AT2G36870.1
xyloglucan endotransglucosylase/hydrolase 32
Chr1_-_6999839 15.27 AT1G20190.1
expansin 11
Chr1_+_20447157 15.25 AT1G54820.1
AT1G54820.2
AT1G54820.3
AT1G54820.4
Protein kinase superfamily protein
Chr5_-_18026077 15.21 AT5G44680.1
DNA glycosylase superfamily protein
Chr2_-_15137012 15.15 AT2G36050.1
ovate family protein 15
Chr1_-_4530222 14.85 AT1G13250.1
galacturonosyltransferase-like 3
Chr1_+_17918207 14.78 AT1G48480.1
receptor-like kinase 1
Chr4_+_16397995 14.70 AT4G34260.1
1,2-alpha-L-fucosidase
Chr1_+_26141726 14.41 AT1G69530.2
AT1G69530.1
AT1G69530.3
AT1G69530.5
AT1G69530.4
expansin A1
Chr5_+_21020014 14.37 AT5G51750.1
subtilase 1.3
Chr1_-_11740399 14.24 AT1G32470.1
Single hybrid motif superfamily protein
Chr1_-_6999523 14.24 AT1G20190.2
expansin 11
Chr4_+_620691 14.18 AT4G01460.1
AT4G01460.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_+_1676999 14.13 AT2G04780.2
FASCICLIN-like arabinoogalactan 7
Chr4_+_14517393 13.99 AT4G29610.1
Cytidine/deoxycytidylate deaminase family protein
Chr4_-_16583075 13.96 AT4G34760.1
SAUR-like auxin-responsive protein family
Chr1_-_21614169 13.91 AT1G58270.1
TRAF-like family protein
Chr4_-_17355891 13.87 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
PQ-loop repeat family protein / transmembrane family protein
Chr3_-_19595834 13.80 AT3G52870.1
IQ calmodulin-binding motif family protein
Chr2_+_1676717 13.79 AT2G04780.1
FASCICLIN-like arabinoogalactan 7
Chr4_+_16022269 13.63 AT4G33220.1
AT4G33220.2
pectin methylesterase 44
Chr5_+_16468327 13.41 AT5G41140.1
AT5G41140.2
Myosin heavy chain-related protein
Chr3_+_8586359 13.41 AT3G23805.1
ralf-like 24
Chr4_-_8307934 13.39 AT4G14440.1
3-hydroxyacyl-CoA dehydratase 1
Chr3_+_17949416 13.27 AT3G48460.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_-_8338032 13.20 AT5G24420.1
6-phosphogluconolactonase 5
Chr3_-_15617149 13.19 AT3G43720.2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_-_15617309 13.04 AT3G43720.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_-_17581275 12.98 AT5G43750.1
NAD(P)H dehydrogenase 18
Chr5_-_20712386 12.96 AT5G50915.4
AT5G50915.2
AT5G50915.1
AT5G50915.3
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_+_18528267 12.88 AT5G45670.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_-_990630 12.79 AT5G03760.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr2_-_7496292 12.76 AT2G17230.1
EXORDIUM like 5
Chr1_-_26515188 12.70 AT1G70370.2
AT1G70370.1
polygalacturonase 2
Chr3_-_20903080 12.67 AT3G56370.1
Leucine-rich repeat protein kinase family protein
Chr5_+_19825078 12.66 AT5G48900.1
Pectin lyase-like superfamily protein
Chr5_-_8916856 12.60 AT5G25610.1
BURP domain-containing protein
Chr2_+_18626188 12.54 AT2G45180.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_-_373805 12.51 AT3G02110.1
serine carboxypeptidase-like 25
Chr3_+_10017321 12.47 AT3G27160.1
AT3G27160.2
Ribosomal protein S21 family protein
Chr1_+_28428671 12.47 AT1G75710.1
C2H2-like zinc finger protein
Chr1_-_15607966 12.33 AT1G41830.1
SKU5-similar 6
Chr1_+_27452748 12.31 AT1G72970.1
AT1G72970.2
Glucose-methanol-choline (GMC) oxidoreductase family protein
Chr5_-_671687 12.27 AT5G02890.1
HXXXD-type acyl-transferase family protein
Chr1_+_11343854 12.16 AT1G31690.1
Copper amine oxidase family protein
Chr1_+_4899045 12.15 AT1G14345.1
NAD(P)-linked oxidoreductase superfamily protein
Chr5_-_3183984 12.03 AT5G10150.2
AT5G10150.1
UPSTREAM OF FLC protein (DUF966)
Chr5_-_3183484 11.99 AT5G10150.3
AT5G10150.4
UPSTREAM OF FLC protein (DUF966)
Chr3_-_2130451 11.92 AT3G06750.1
hydroxyproline-rich glycoprotein family protein
Chr1_+_23911024 11.92 AT1G64390.1
glycosyl hydrolase 9C2
Chr2_-_16908152 11.91 AT2G40475.1
hypothetical protein
Chr3_+_188321 11.90 AT3G01480.1
AT3G01480.2
cyclophilin 38
Chr3_-_6436046 11.85 AT3G18710.1
plant U-box 29
Chr5_+_5078200 11.78 AT5G15600.1
AT5G15600.2
SPIRAL1-like4
Chr4_+_15819489 11.76 AT4G32800.1
Integrase-type DNA-binding superfamily protein
Chr1_+_1231452 11.75 AT1G04520.1
plasmodesmata-located protein 2
Chr4_+_160643 11.73 AT4G00360.1
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr3_-_8902835 11.71 AT3G24480.1
Leucine-rich repeat (LRR) family protein
Chr4_-_18428412 11.61 AT4G39710.2
AT4G39710.3
AT4G39710.1
FK506-binding protein 16-2
Chr1_-_25758232 11.51 AT1G68590.2
Ribosomal protein PSRP-3/Ycf65
Chr3_-_1136397 11.47 AT3G04290.1
Li-tolerant lipase 1
Chr1_-_25758411 11.44 AT1G68590.1
Ribosomal protein PSRP-3/Ycf65
Chr5_+_20945676 11.35 AT5G51560.1
Leucine-rich repeat protein kinase family protein
Chr5_+_22474142 11.32 AT5G55480.1
SHV3-like 1
Chr1_-_1940463 11.13 AT1G06360.1
AT1G06360.2
Fatty acid desaturase family protein
Chr2_-_17827648 11.11 AT2G42840.1
protodermal factor 1
Chr4_+_16708552 11.11 AT4G35100.2
plasma membrane intrinsic protein 3
Chr4_+_16708361 11.10 AT4G35100.1
plasma membrane intrinsic protein 3
Chr1_+_24503315 11.09 AT1G65870.1
Disease resistance-responsive (dirigent-like protein) family protein
Chr2_-_1824480 11.06 AT2G05100.1
AT2G05100.2
photosystem II light harvesting complex protein 2.1
Chr4_+_10651744 10.98 AT4G19530.1
AT4G19530.2
disease resistance protein (TIR-NBS-LRR class) family
Chr5_-_5072492 10.89 AT5G15580.1
longifolia1
Chr4_+_14944129 10.83 AT4G30610.1
alpha/beta-Hydrolases superfamily protein
Chr4_+_14677661 10.82 AT4G30020.2
AT4G30020.3
PA-domain containing subtilase family protein
Chr1_+_29413874 10.80 AT1G78170.1
E3 ubiquitin-protein ligase
Chr4_+_13177356 10.76 AT4G25960.1
P-glycoprotein 2
Chr2_-_12277417 10.74 AT2G28630.2
3-ketoacyl-CoA synthase 12
Chr1_+_24149208 10.74 AT1G65010.1
WEB family protein (DUF827)
Chr2_-_17837618 10.74 AT2G42870.1
phy rapidly regulated 1
Chr5_+_6387341 10.66 AT5G19090.1
AT5G19090.4
AT5G19090.3
AT5G19090.2
Heavy metal transport/detoxification superfamily protein
Chr5_+_24494291 10.64 AT5G60890.1
myb domain protein 34
Chr1_-_22317070 10.62 AT1G60590.1
Pectin lyase-like superfamily protein
Chr3_-_3277930 10.55 AT3G10520.1
hemoglobin 2
Chr5_-_7419335 10.52 AT5G22390.1
FANTASTIC four-like protein (DUF3049)
Chr1_-_1169034 10.52 AT1G04360.1
RING/U-box superfamily protein
Chr4_+_17986384 10.49 AT4G38430.1
rho guanyl-nucleotide exchange factor 1
Chr4_+_13133402 10.48 AT4G25830.1
Uncharacterized protein family (UPF0497)
Chr1_-_18690503 10.48 AT1G50450.1
Saccharopine dehydrogenase
Chr1_+_23144385 10.47 AT1G62520.1
sulfated surface-like glycoprotein
Chr2_-_12277245 10.46 AT2G28630.1
3-ketoacyl-CoA synthase 12
Chr3_+_8194606 10.45 AT3G23050.1
AT3G23050.3
AT3G23050.2
indole-3-acetic acid 7
Chr1_+_24647121 10.24 AT1G66180.1
Eukaryotic aspartyl protease family protein
Chr2_+_9948594 10.24 AT2G23360.1
filament-like protein (DUF869)
Chr2_-_12785037 10.20 AT2G29980.2
fatty acid desaturase 3
Chr5_-_4299264 10.17 AT5G13400.1
Major facilitator superfamily protein
Chr2_+_6542166 10.16 AT2G15090.1
3-ketoacyl-CoA synthase 8
Chr2_-_13797237 10.16 AT2G32500.2
AT2G32500.1
Stress responsive alpha-beta barrel domain protein
Chr4_-_8350030 10.15 AT4G14550.4
indole-3-acetic acid inducible 14
Chr4_-_14439723 10.14 AT4G29310.1
AT4G29310.2
DUF1005 family protein (DUF1005)
Chr3_+_19713799 10.11 AT3G53190.1
Pectin lyase-like superfamily protein
Chr2_-_11173278 10.11 AT2G26250.1
3-ketoacyl-CoA synthase 10
Chr1_-_24033600 10.08 AT1G64670.1
AT1G64670.3
AT1G64670.2
alpha/beta-Hydrolases superfamily protein
Chr2_-_12785190 10.07 AT2G29980.1
fatty acid desaturase 3
Chr3_-_22972239 10.04 AT3G62020.2
AT3G62020.1
germin-like protein 10
Chr5_+_16151772 10.02 AT5G40380.3
AT5G40380.2
cysteine-rich RLK (RECEPTOR-like protein kinase) 42
Chr5_-_4582856 10.00 AT5G14210.1
AT5G14210.2
AT5G14210.3
Leucine-rich repeat protein kinase family protein
Chr2_+_19145218 10.00 AT2G46630.1
serine/arginine repetitive matrix protein
Chr4_-_7893727 9.98 AT4G13575.1
AT4G13575.2
hypothetical protein
Chr1_+_18290942 9.98 AT1G49430.1
AT1G49430.2
long-chain acyl-CoA synthetase 2
Chr5_+_5431584 9.95 AT5G16590.1
Leucine-rich repeat protein kinase family protein
Chr5_+_1912013 9.94 AT5G06270.2
AT5G06270.1
hypothetical protein
Chr4_+_9906821 9.90 AT4G17810.1
AT4G17810.2
C2H2 and C2HC zinc fingers superfamily protein
Chr4_-_947075 9.89 AT4G02130.2
AT4G02130.3
galacturonosyltransferase 6
Chr4_+_13718679 9.84 AT4G27430.2
COP1-interacting protein 7
Chr3_-_1855063 9.83 AT3G06130.2
AT3G06130.1
Heavy metal transport/detoxification superfamily protein
Chr1_-_19101265 9.82 AT1G51500.1
ABC-2 type transporter family protein
Chr4_+_13718007 9.77 AT4G27430.1
COP1-interacting protein 7
Chr2_-_18914739 9.71 AT2G45970.1
cytochrome P450, family 86, subfamily A, polypeptide 8
Chr1_+_28498821 9.71 AT1G75900.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_+_17065858 9.68 AT1G45130.2
beta-galactosidase 5
Chr4_+_14678096 9.66 AT4G30020.4
PA-domain containing subtilase family protein
Chr4_+_14192569 9.65 AT4G28720.1
Flavin-binding monooxygenase family protein
Chr3_+_20644843 9.63 AT3G55646.1
TPRXL
Chr5_-_18588792 9.63 AT5G45820.1
CBL-interacting protein kinase 20
Chr3_-_22322661 9.62 AT3G60390.1
homeobox-leucine zipper protein 3
Chr1_-_8235019 9.59 AT1G23205.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_+_10505711 9.57 AT3G28180.1
Cellulose-synthase-like C4
Chr4_-_8016582 9.53 AT4G13840.1
HXXXD-type acyl-transferase family protein
Chr1_+_18802552 9.52 AT1G50732.1
transmembrane protein
Chr1_+_26439556 9.48 AT1G70210.1
CYCLIN D1;1
Chr2_-_18443405 9.46 AT2G44740.1
cyclin p4;1
Chr3_-_9255083 9.44 AT3G25500.1
formin homology 1
Chr1_+_18351324 9.43 AT1G49580.1
Calcium-dependent protein kinase (CDPK) family protein
Chr4_-_8350263 9.36 AT4G14550.1
AT4G14550.2
AT4G14550.3
indole-3-acetic acid inducible 14
Chr5_-_15828035 9.36 AT5G39530.1
AT5G39530.2
hypothetical protein (DUF1997)
Chr1_-_17133809 9.35 AT1G45207.3
Remorin family protein
Chr1_+_17065111 9.32 AT1G45130.1
beta-galactosidase 5
Chr3_+_20196329 9.30 AT3G54560.2
histone H2A 11
Chr5_+_23374873 9.28 AT5G57700.3
AT5G57700.2
AT5G57700.1
AT5G57700.5
BNR/Asp-box repeat family protein
Chr5_-_3709403 9.27 AT5G11550.1
ARM repeat superfamily protein
Chr4_+_12376122 9.27 AT4G23750.1
AT4G23750.2
cytokinin response factor 2
Chr5_-_13959830 9.24 AT5G35790.1
glucose-6-phosphate dehydrogenase 1
Chr2_-_16198577 9.22 AT2G38750.1
annexin 4
Chr5_+_15957368 9.20 AT5G39860.1
basic helix-loop-helix (bHLH) DNA-binding family protein
Chr3_+_5676749 9.18 AT3G16660.2
AT3G16660.1
Pollen Ole e 1 allergen and extensin family protein
Chr3_-_10877578 9.17 AT3G28860.1
ATP binding cassette subfamily B19
Chr4_-_18510555 9.17 AT4G39900.1
adenine deaminase
Chr3_+_20196140 9.12 AT3G54560.1
histone H2A 11
Chr2_+_15906555 9.12 AT2G38010.2
AT2G38010.3
Neutral/alkaline non-lysosomal ceramidase
Chr5_-_21724642 9.12 AT5G53490.3
AT5G53490.2
AT5G53490.1
AT5G53490.4
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_947249 9.11 AT4G02130.1
galacturonosyltransferase 6
Chr4_+_14677141 9.11 AT4G30020.1
PA-domain containing subtilase family protein
Chr3_-_16861527 9.11 AT3G45850.1
AT3G45850.2
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_8042853 9.08 AT5G23860.1
AT5G23860.2
tubulin beta 8
Chr2_-_16198832 9.05 AT2G38750.2
annexin 4
Chr5_-_3728726 9.05 AT5G11590.1
Integrase-type DNA-binding superfamily protein
Chr1_+_19879405 9.04 AT1G53300.1
tetratricopetide-repeat thioredoxin-like 1
Chr1_-_29352946 8.96 AT1G78060.1
Glycosyl hydrolase family protein
Chr4_-_8454144 8.95 AT4G14740.4
AT4G14740.2
AT4G14740.1
auxin canalization protein (DUF828)
Chr5_+_21226721 8.95 AT5G52280.1
Myosin heavy chain-related protein
Chr3_-_427095 8.94 AT3G02250.1
O-fucosyltransferase family protein
Chr4_+_10949573 8.94 AT4G20270.1
Leucine-rich receptor-like protein kinase family protein
Chr2_-_15636522 8.90 AT2G37220.1
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_+_26983615 8.88 AT1G71720.1
AT1G71720.2
Nucleic acid-binding proteins superfamily
Chr3_-_8290164 8.86 AT3G23230.1
Integrase-type DNA-binding superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G00730

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
5.8 17.4 GO:0045876 positive regulation of sister chromatid cohesion(GO:0045876)
5.5 16.5 GO:1900032 regulation of trichome patterning(GO:1900032) negative regulation of trichome patterning(GO:1900033)
5.0 14.9 GO:0080051 cutin transport(GO:0080051)
4.6 27.8 GO:1903428 photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428)
4.2 12.6 GO:0010541 acropetal auxin transport(GO:0010541)
3.6 14.5 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
3.4 17.1 GO:0010376 stomatal complex formation(GO:0010376)
3.3 23.4 GO:1904276 regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278)
3.3 9.9 GO:0043471 regulation of glycolytic process(GO:0006110) regulation of nucleotide catabolic process(GO:0030811) regulation of carbohydrate catabolic process(GO:0043470) regulation of cellular carbohydrate catabolic process(GO:0043471)
3.2 47.9 GO:0030497 fatty acid elongation(GO:0030497)
3.2 9.5 GO:0010062 negative regulation of cell fate specification(GO:0009996) negative regulation of trichoblast fate specification(GO:0010062) negative regulation of plant epidermal cell differentiation(GO:1903889)
3.2 12.6 GO:0080003 thalianol metabolic process(GO:0080003)
3.1 6.3 GO:2000039 regulation of trichome morphogenesis(GO:2000039)
3.0 38.9 GO:0032544 plastid translation(GO:0032544)
3.0 17.8 GO:0009650 UV protection(GO:0009650)
2.7 10.8 GO:0001578 microtubule bundle formation(GO:0001578)
2.7 13.4 GO:0010086 embryonic root morphogenesis(GO:0010086)
2.6 10.5 GO:0015669 gas transport(GO:0015669)
2.6 103.9 GO:0009828 plant-type cell wall loosening(GO:0009828)
2.5 10.0 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
2.5 7.4 GO:0070922 miRNA loading onto RISC involved in gene silencing by miRNA(GO:0035280) small RNA loading onto RISC(GO:0070922)
2.4 17.0 GO:0009099 valine biosynthetic process(GO:0009099)
2.4 55.2 GO:0008544 epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855)
2.3 30.5 GO:0010025 wax biosynthetic process(GO:0010025) wax metabolic process(GO:0010166)
2.3 7.0 GO:0043446 cellular alkane metabolic process(GO:0043446)
2.3 11.5 GO:0010226 response to lithium ion(GO:0010226)
2.3 6.9 GO:0048629 trichome patterning(GO:0048629)
2.3 11.3 GO:0043479 pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
2.2 13.4 GO:0006216 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
2.2 62.2 GO:0010143 cutin biosynthetic process(GO:0010143)
2.2 8.8 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
2.2 30.6 GO:0010233 vascular transport(GO:0010232) phloem transport(GO:0010233)
2.1 6.4 GO:1900386 positive regulation of flavonol biosynthetic process(GO:1900386)
2.1 10.6 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
2.1 52.7 GO:0042335 cuticle development(GO:0042335)
2.1 29.4 GO:0010052 guard cell differentiation(GO:0010052)
2.1 10.4 GO:0019745 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
2.0 16.3 GO:0016103 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
2.0 14.2 GO:0019464 glycine decarboxylation via glycine cleavage system(GO:0019464)
2.0 8.0 GO:0010480 microsporocyte differentiation(GO:0010480)
2.0 11.9 GO:0051098 regulation of binding(GO:0051098)
2.0 7.9 GO:0055073 cadmium ion homeostasis(GO:0055073)
1.9 5.8 GO:0019406 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
1.9 9.5 GO:0051325 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
1.9 9.4 GO:0051016 barbed-end actin filament capping(GO:0051016)
1.9 7.5 GO:0016139 glycoside catabolic process(GO:0016139)
1.7 29.5 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
1.7 1.7 GO:0010254 nectary development(GO:0010254)
1.7 32.5 GO:0048826 cotyledon morphogenesis(GO:0048826)
1.7 5.1 GO:0040019 positive regulation of embryonic development(GO:0040019)
1.7 8.6 GO:0031022 nuclear migration along microfilament(GO:0031022)
1.7 22.2 GO:0009051 pentose-phosphate shunt, oxidative branch(GO:0009051)
1.6 4.9 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
1.6 11.4 GO:0006030 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
1.6 4.9 GO:0060429 epithelium development(GO:0060429)
1.6 6.4 GO:0051574 positive regulation of histone H3-K9 methylation(GO:0051574)
1.6 6.4 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
1.5 6.2 GO:0043157 response to cation stress(GO:0043157)
1.5 18.4 GO:0044030 regulation of DNA methylation(GO:0044030)
1.5 6.0 GO:0009865 pollen tube adhesion(GO:0009865) cell-cell adhesion(GO:0098609) multi organism cell adhesion(GO:0098740)
1.5 10.5 GO:0043271 negative regulation of ion transport(GO:0043271)
1.5 9.0 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
1.5 1.5 GO:0048645 organ formation(GO:0048645)
1.5 5.9 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
1.5 4.4 GO:0042817 pyridoxal metabolic process(GO:0042817)
1.4 4.3 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
1.4 5.7 GO:0010500 transmitting tissue development(GO:0010500)
1.4 4.3 GO:0046499 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
1.4 14.1 GO:0080183 response to photooxidative stress(GO:0080183)
1.4 30.6 GO:0045493 xylan catabolic process(GO:0045493)
1.4 47.0 GO:0048825 cotyledon development(GO:0048825)
1.4 17.7 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
1.3 4.0 GO:1900151 regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060211) regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151)
1.3 5.3 GO:0010495 long-distance posttranscriptional gene silencing(GO:0010495)
1.3 6.5 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
1.3 6.5 GO:0010155 regulation of proton transport(GO:0010155)
1.3 18.0 GO:0010315 auxin efflux(GO:0010315)
1.3 3.8 GO:0033194 response to hydroperoxide(GO:0033194)
1.3 12.8 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
1.3 3.8 GO:0042539 hypotonic salinity response(GO:0042539)
1.2 10.9 GO:0051513 regulation of monopolar cell growth(GO:0051513)
1.2 14.2 GO:0007143 female meiotic division(GO:0007143)
1.2 11.7 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
1.2 3.5 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
1.2 3.5 GO:0015812 gamma-aminobutyric acid transport(GO:0015812)
1.2 4.6 GO:0090342 regulation of cell aging(GO:0090342)
1.1 2.3 GO:0046373 L-arabinose metabolic process(GO:0046373)
1.1 88.4 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
1.1 4.4 GO:0090603 sieve element differentiation(GO:0090603)
1.1 3.3 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
1.1 4.3 GO:0061087 positive regulation of histone H3-K27 methylation(GO:0061087)
1.1 31.9 GO:0006284 base-excision repair(GO:0006284)
1.1 14.8 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
1.1 7.4 GO:0072337 modified amino acid transport(GO:0072337)
1.0 5.2 GO:0009558 embryo sac cellularization(GO:0009558)
1.0 7.3 GO:0051955 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
1.0 7.3 GO:0010236 photosynthetic electron transport in photosystem II(GO:0009772) plastoquinone biosynthetic process(GO:0010236)
1.0 3.1 GO:2001294 fatty-acyl-CoA catabolic process(GO:0036115) malonyl-CoA catabolic process(GO:2001294)
1.0 9.2 GO:0043096 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
1.0 3.1 GO:0009805 coumarin biosynthetic process(GO:0009805)
1.0 4.1 GO:0072502 cellular phosphate ion homeostasis(GO:0030643) cellular trivalent inorganic anion homeostasis(GO:0072502)
1.0 27.2 GO:0010268 brassinosteroid homeostasis(GO:0010268)
1.0 3.0 GO:0071421 manganese ion transmembrane transport(GO:0071421)
1.0 7.0 GO:0045492 xylan biosynthetic process(GO:0045492)
1.0 21.8 GO:0009645 response to low light intensity stimulus(GO:0009645)
1.0 14.7 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
1.0 5.8 GO:0080165 callose deposition in phloem sieve plate(GO:0080165)
1.0 3.8 GO:0002943 tRNA dihydrouridine synthesis(GO:0002943)
1.0 6.7 GO:0051125 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
1.0 8.6 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.9 3.7 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.9 2.8 GO:2000029 regulation of proanthocyanidin biosynthetic process(GO:2000029)
0.9 6.4 GO:0090057 root radial pattern formation(GO:0090057)
0.9 22.0 GO:0009686 gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686)
0.9 3.5 GO:0080119 ER body organization(GO:0080119)
0.9 7.0 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.9 3.5 GO:0010432 bract development(GO:0010432)
0.9 7.8 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.9 2.6 GO:0033528 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.9 1.7 GO:0010338 leaf formation(GO:0010338)
0.9 74.9 GO:0045490 pectin catabolic process(GO:0045490)
0.8 2.5 GO:0034486 hexose transport(GO:0008645) fructose transport(GO:0015755) vacuolar transmembrane transport(GO:0034486)
0.8 2.5 GO:0009647 skotomorphogenesis(GO:0009647)
0.8 2.4 GO:0042766 nucleosome mobilization(GO:0042766)
0.8 52.7 GO:0007018 microtubule-based movement(GO:0007018)
0.8 6.4 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.8 45.3 GO:0007267 cell-cell signaling(GO:0007267)
0.8 2.3 GO:0097298 regulation of nucleus size(GO:0097298)
0.8 3.9 GO:0052546 cell wall pectin metabolic process(GO:0052546)
0.8 3.8 GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767)
0.8 7.5 GO:1990066 nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066)
0.7 5.2 GO:0006552 leucine catabolic process(GO:0006552)
0.7 13.4 GO:0042044 water transport(GO:0006833) fluid transport(GO:0042044)
0.7 11.2 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.7 6.7 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.7 10.3 GO:0010274 hydrotropism(GO:0010274)
0.7 2.2 GO:0070150 mitochondrial glycyl-tRNA aminoacylation(GO:0070150)
0.7 2.2 GO:0010185 regulation of cellular defense response(GO:0010185)
0.7 16.6 GO:0009944 polarity specification of adaxial/abaxial axis(GO:0009944) specification of axis polarity(GO:0065001)
0.7 7.3 GO:1903338 regulation of cell wall organization or biogenesis(GO:1903338)
0.7 5.9 GO:0071249 cellular response to nitrate(GO:0071249)
0.6 15.2 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.6 4.4 GO:0048598 embryonic morphogenesis(GO:0048598)
0.6 2.5 GO:0042144 regulation of vacuole fusion, non-autophagic(GO:0032889) vacuole fusion, non-autophagic(GO:0042144)
0.6 4.9 GO:0051294 establishment of mitotic spindle orientation(GO:0000132) establishment of mitotic spindle localization(GO:0040001) establishment of spindle localization(GO:0051293) establishment of spindle orientation(GO:0051294) spindle localization(GO:0051653)
0.6 12.9 GO:0010227 floral organ abscission(GO:0010227)
0.6 7.3 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.6 1.8 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.6 7.0 GO:0006857 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.6 1.7 GO:0010424 DNA methylation on cytosine within a CG sequence(GO:0010424)
0.6 5.8 GO:0010161 red light signaling pathway(GO:0010161)
0.6 1.7 GO:0001894 tissue homeostasis(GO:0001894) homeostasis of number of meristem cells(GO:0007639) homeostasis of number of cells(GO:0048872) homeostasis of number of cells within a tissue(GO:0048873)
0.6 2.2 GO:1900370 positive regulation of posttranscriptional gene silencing(GO:0060148) positive regulation of RNA interference(GO:1900370)
0.5 1.6 GO:1990884 rRNA acetylation involved in maturation of SSU-rRNA(GO:1904812) rRNA acetylation(GO:1990882) RNA acetylation(GO:1990884)
0.5 5.9 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.5 2.7 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.5 2.7 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.5 21.2 GO:0045489 pectin biosynthetic process(GO:0045489)
0.5 1.1 GO:0009804 coumarin metabolic process(GO:0009804)
0.5 8.9 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.5 11.8 GO:0006817 phosphate ion transport(GO:0006817)
0.5 1.5 GO:1902458 positive regulation of stomatal opening(GO:1902458)
0.5 7.6 GO:0015743 malate transport(GO:0015743)
0.5 3.5 GO:0010358 leaf shaping(GO:0010358)
0.5 2.0 GO:0010375 stomatal complex patterning(GO:0010375)
0.5 1.5 GO:0033206 meiotic cytokinesis(GO:0033206)
0.5 4.3 GO:0018344 protein geranylgeranylation(GO:0018344)
0.5 7.6 GO:0009638 phototropism(GO:0009638)
0.5 1.0 GO:2001293 malonyl-CoA metabolic process(GO:2001293)
0.5 1.9 GO:0080094 response to trehalose-6-phosphate(GO:0080094)
0.5 2.8 GO:0048830 adventitious root development(GO:0048830)
0.5 28.5 GO:0009736 cytokinin-activated signaling pathway(GO:0009736)
0.5 2.8 GO:0006013 mannose metabolic process(GO:0006013)
0.4 6.3 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.4 4.5 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.4 4.5 GO:0010345 suberin biosynthetic process(GO:0010345)
0.4 2.2 GO:0043247 telomere maintenance in response to DNA damage(GO:0043247)
0.4 3.1 GO:0044211 CTP salvage(GO:0044211)
0.4 2.2 GO:0071585 detoxification of cadmium ion(GO:0071585)
0.4 9.1 GO:0009292 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.4 2.2 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.4 3.9 GO:0080086 stamen filament development(GO:0080086)
0.4 1.7 GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic(GO:0034414)
0.4 2.1 GO:0042436 tryptophan catabolic process(GO:0006569) indole-containing compound catabolic process(GO:0042436) indolalkylamine catabolic process(GO:0046218)
0.4 12.2 GO:0030705 vesicle transport along actin filament(GO:0030050) cytoskeleton-dependent intracellular transport(GO:0030705) actin filament-based transport(GO:0099515) vesicle cytoskeletal trafficking(GO:0099518)
0.4 6.7 GO:0048509 regulation of meristem development(GO:0048509)
0.4 1.7 GO:0090309 positive regulation of chromatin silencing(GO:0031937) regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
0.4 4.9 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
0.4 10.2 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.4 2.0 GO:0015939 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.4 1.6 GO:0071492 response to UV-A(GO:0070141) cellular response to UV-A(GO:0071492)
0.4 3.9 GO:0000966 RNA 5'-end processing(GO:0000966)
0.4 5.5 GO:0048658 anther wall tapetum development(GO:0048658)
0.4 1.9 GO:0010222 stem vascular tissue pattern formation(GO:0010222)
0.4 1.9 GO:0000187 activation of MAPK activity(GO:0000187) positive regulation of MAP kinase activity(GO:0043406)
0.4 4.9 GO:0001709 cell fate determination(GO:0001709)
0.4 18.0 GO:0010090 trichome morphogenesis(GO:0010090)
0.4 1.5 GO:0043693 monoterpene biosynthetic process(GO:0043693)
0.4 2.2 GO:0000710 meiotic mismatch repair(GO:0000710)
0.4 1.1 GO:0090116 C-5 methylation of cytosine(GO:0090116)
0.4 6.6 GO:0097031 mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031)
0.4 3.3 GO:0033619 membrane protein proteolysis(GO:0033619)
0.4 1.4 GO:0061062 nematode larval development(GO:0002119) larval development(GO:0002164) regulation of nematode larval development(GO:0061062)
0.4 1.1 GO:0010024 phytochromobilin biosynthetic process(GO:0010024) phytochromobilin metabolic process(GO:0051202)
0.4 27.8 GO:0006633 fatty acid biosynthetic process(GO:0006633)
0.4 1.4 GO:2000014 regulation of endosperm development(GO:2000014)
0.4 0.4 GO:0015740 C4-dicarboxylate transport(GO:0015740)
0.3 5.8 GO:0019432 triglyceride biosynthetic process(GO:0019432)
0.3 10.5 GO:0010075 regulation of meristem growth(GO:0010075)
0.3 2.0 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.3 2.3 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.3 1.6 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.3 2.6 GO:0006821 chloride transport(GO:0006821)
0.3 6.1 GO:0045036 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.3 6.4 GO:0006891 intra-Golgi vesicle-mediated transport(GO:0006891)
0.3 1.9 GO:0010449 root meristem growth(GO:0010449)
0.3 0.9 GO:0060145 viral gene silencing in virus induced gene silencing(GO:0060145)
0.3 5.8 GO:0080155 regulation of fertilization(GO:0080154) regulation of double fertilization forming a zygote and endosperm(GO:0080155)
0.3 0.9 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.3 2.4 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.3 1.2 GO:0070734 histone H3-K27 methylation(GO:0070734)
0.3 3.5 GO:0009641 shade avoidance(GO:0009641)
0.3 3.1 GO:0009423 chorismate biosynthetic process(GO:0009423)
0.3 4.5 GO:0002229 defense response to oomycetes(GO:0002229)
0.3 1.1 GO:0000706 meiotic DNA double-strand break processing(GO:0000706) DNA double-strand break processing(GO:0000729)
0.3 1.4 GO:0001682 tRNA 5'-leader removal(GO:0001682)
0.3 3.0 GO:0071051 polyadenylation-dependent snoRNA 3'-end processing(GO:0071051)
0.3 0.5 GO:0035067 negative regulation of histone acetylation(GO:0035067) negative regulation of protein acetylation(GO:1901984) negative regulation of peptidyl-lysine acetylation(GO:2000757)
0.3 1.4 GO:0007231 osmosensory signaling pathway(GO:0007231)
0.3 8.9 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.3 3.5 GO:0030488 tRNA methylation(GO:0030488)
0.3 4.0 GO:0052803 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.3 11.2 GO:0009809 lignin biosynthetic process(GO:0009809)
0.3 0.5 GO:1904589 regulation of protein import(GO:1904589)
0.3 3.4 GO:0015918 sterol transport(GO:0015918)
0.3 4.4 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.3 0.8 GO:0042908 xenobiotic transport(GO:0042908)
0.3 1.0 GO:0046168 glycerol-3-phosphate catabolic process(GO:0046168)
0.3 2.8 GO:0060627 regulation of vesicle-mediated transport(GO:0060627)
0.3 5.0 GO:0009904 chloroplast accumulation movement(GO:0009904)
0.2 8.2 GO:0048510 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.2 3.0 GO:0018026 peptidyl-lysine monomethylation(GO:0018026)
0.2 11.3 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.2 6.5 GO:0016226 iron-sulfur cluster assembly(GO:0016226) metallo-sulfur cluster assembly(GO:0031163)
0.2 3.6 GO:0010492 maintenance of shoot apical meristem identity(GO:0010492)
0.2 0.7 GO:1900459 positive regulation of brassinosteroid mediated signaling pathway(GO:1900459)
0.2 3.3 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.2 6.6 GO:0009698 phenylpropanoid metabolic process(GO:0009698)
0.2 2.4 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.2 2.4 GO:0005987 sucrose catabolic process(GO:0005987)
0.2 1.1 GO:0006654 phosphatidic acid biosynthetic process(GO:0006654)
0.2 0.8 GO:0042989 sequestering of actin monomers(GO:0042989)
0.2 4.8 GO:0006935 chemotaxis(GO:0006935) pollen tube guidance(GO:0010183) taxis(GO:0042330) positive chemotaxis(GO:0050918)
0.2 1.0 GO:0042276 error-prone translesion synthesis(GO:0042276)
0.2 4.6 GO:0043572 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.2 2.0 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.2 6.1 GO:0006305 DNA alkylation(GO:0006305) DNA methylation(GO:0006306)
0.2 2.0 GO:0036297 interstrand cross-link repair(GO:0036297)
0.2 0.6 GO:0019365 pyridine nucleotide salvage(GO:0019365)
0.2 6.4 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.2 4.2 GO:0009959 negative gravitropism(GO:0009959)
0.2 8.3 GO:0009606 tropism(GO:0009606)
0.2 2.8 GO:0006298 mismatch repair(GO:0006298)
0.2 1.2 GO:0030307 positive regulation of cell growth(GO:0030307)
0.2 4.0 GO:0050821 protein stabilization(GO:0050821)
0.2 12.1 GO:0006887 exocytosis(GO:0006887)
0.2 4.8 GO:1901068 guanosine-containing compound metabolic process(GO:1901068)
0.2 2.7 GO:0006538 glutamate catabolic process(GO:0006538)
0.2 3.8 GO:0009612 response to mechanical stimulus(GO:0009612)
0.2 4.1 GO:0007264 small GTPase mediated signal transduction(GO:0007264)
0.2 2.2 GO:0046149 pigment catabolic process(GO:0046149)
0.2 3.5 GO:0006814 sodium ion transport(GO:0006814)
0.2 1.1 GO:0080187 floral organ senescence(GO:0080187)
0.2 7.7 GO:0010286 heat acclimation(GO:0010286)
0.2 7.2 GO:0010101 post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102)
0.2 6.9 GO:0007131 reciprocal meiotic recombination(GO:0007131) reciprocal DNA recombination(GO:0035825)
0.2 1.6 GO:0015749 monosaccharide transport(GO:0015749)
0.2 2.7 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.2 5.4 GO:0006730 one-carbon metabolic process(GO:0006730)
0.2 1.7 GO:0010074 maintenance of meristem identity(GO:0010074)
0.2 9.4 GO:0071367 brassinosteroid mediated signaling pathway(GO:0009742) steroid hormone mediated signaling pathway(GO:0043401) cellular response to brassinosteroid stimulus(GO:0071367) cellular response to steroid hormone stimulus(GO:0071383)
0.2 2.5 GO:0009870 defense response signaling pathway, resistance gene-dependent(GO:0009870)
0.2 1.3 GO:0031425 chloroplast RNA processing(GO:0031425)
0.1 1.7 GO:0009741 response to brassinosteroid(GO:0009741)
0.1 2.6 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.1 1.5 GO:0046654 folic acid-containing compound biosynthetic process(GO:0009396) tetrahydrofolate biosynthetic process(GO:0046654)
0.1 1.9 GO:0050826 response to freezing(GO:0050826)
0.1 2.2 GO:0006879 cellular iron ion homeostasis(GO:0006879)
0.1 3.1 GO:0071804 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.1 4.9 GO:0006006 glucose metabolic process(GO:0006006)
0.1 1.0 GO:0009785 blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.1 1.7 GO:0018208 peptidyl-proline modification(GO:0018208)
0.1 0.7 GO:0015919 peroxisomal membrane transport(GO:0015919)
0.1 2.5 GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter(GO:0032968)
0.1 0.9 GO:0046246 terpene biosynthetic process(GO:0046246)
0.1 1.7 GO:0016117 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.1 2.9 GO:0000959 mitochondrial RNA metabolic process(GO:0000959)
0.1 1.1 GO:0009585 phototransduction(GO:0007602) detection of light stimulus(GO:0009583) red, far-red light phototransduction(GO:0009585)
0.1 4.0 GO:0009694 jasmonic acid metabolic process(GO:0009694)
0.1 1.3 GO:0009086 methionine biosynthetic process(GO:0009086)
0.1 1.2 GO:0052543 callose deposition in cell wall(GO:0052543)
0.1 1.4 GO:0006722 triterpenoid metabolic process(GO:0006722)
0.1 3.5 GO:0006342 chromatin silencing(GO:0006342)
0.1 1.1 GO:2000142 regulation of DNA-templated transcription, initiation(GO:2000142)
0.1 3.2 GO:0019759 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.1 1.1 GO:0043248 proteasome assembly(GO:0043248)
0.1 0.9 GO:0052018 virus induced gene silencing(GO:0009616) modulation by symbiont of RNA levels in host(GO:0052018) modulation of RNA levels in other organism involved in symbiotic interaction(GO:0052249) cellular response to virus(GO:0098586)
0.1 6.9 GO:0080167 response to karrikin(GO:0080167)
0.1 2.3 GO:0006505 GPI anchor metabolic process(GO:0006505) GPI anchor biosynthetic process(GO:0006506)
0.1 1.8 GO:0009846 pollen germination(GO:0009846)
0.1 2.1 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.1 2.5 GO:1901800 positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) positive regulation of proteasomal protein catabolic process(GO:1901800)
0.1 2.4 GO:0006405 RNA export from nucleus(GO:0006405)
0.1 3.1 GO:0009853 photorespiration(GO:0009853)
0.1 1.5 GO:0048768 root hair cell tip growth(GO:0048768)
0.1 2.4 GO:0000911 cytokinesis by cell plate formation(GO:0000911) cytokinetic process(GO:0032506) mitotic cytokinetic process(GO:1902410)
0.1 0.9 GO:0045839 negative regulation of mitotic nuclear division(GO:0045839) negative regulation of nuclear division(GO:0051784)
0.1 2.0 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.1 0.6 GO:0010093 specification of floral organ identity(GO:0010093)
0.1 0.5 GO:0006278 RNA-dependent DNA biosynthetic process(GO:0006278) telomere maintenance via telomerase(GO:0007004)
0.1 0.9 GO:0000373 Group II intron splicing(GO:0000373)
0.1 2.0 GO:0006487 protein N-linked glycosylation(GO:0006487)
0.1 0.3 GO:0009827 plant-type cell wall modification(GO:0009827)
0.1 3.2 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.1 0.4 GO:0009688 abscisic acid biosynthetic process(GO:0009688) apocarotenoid biosynthetic process(GO:0043289) tertiary alcohol biosynthetic process(GO:1902645)
0.0 4.9 GO:0009860 pollen tube growth(GO:0009860)
0.0 0.3 GO:0034508 centromere complex assembly(GO:0034508)
0.0 5.6 GO:0045944 positive regulation of transcription from RNA polymerase II promoter(GO:0045944)
0.0 0.1 GO:0045948 positive regulation of translational initiation(GO:0045948)
0.0 2.0 GO:0048544 recognition of pollen(GO:0048544)
0.0 0.7 GO:0010207 photosystem II assembly(GO:0010207)
0.0 0.4 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.5 GO:0009735 response to cytokinin(GO:0009735)
0.0 0.7 GO:0032543 mitochondrial translation(GO:0032543)
0.0 0.3 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 0.3 GO:0005983 starch catabolic process(GO:0005983)
0.0 0.1 GO:0006435 threonyl-tRNA aminoacylation(GO:0006435)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
3.3 13.0 GO:0070505 pollen coat(GO:0070505)
3.1 27.8 GO:0009503 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
2.8 14.2 GO:0005960 glycine cleavage complex(GO:0005960)
2.1 6.4 GO:0045178 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
2.0 2.0 GO:0035101 FACT complex(GO:0035101)
1.8 35.1 GO:0009986 cell surface(GO:0009986)
1.6 6.5 GO:0009317 acetyl-CoA carboxylase complex(GO:0009317)
1.5 6.1 GO:0010330 cellulose synthase complex(GO:0010330)
1.5 20.7 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
1.5 7.3 GO:0090397 stigma papilla(GO:0090397)
1.4 7.0 GO:0005719 nuclear euchromatin(GO:0005719)
1.4 4.1 GO:0005652 nuclear lamina(GO:0005652)
1.3 7.6 GO:0009346 citrate lyase complex(GO:0009346)
1.2 6.2 GO:0010007 magnesium chelatase complex(GO:0010007)
1.2 183.0 GO:0046658 anchored component of plasma membrane(GO:0046658)
1.1 14.6 GO:0045298 tubulin complex(GO:0045298)
1.1 22.8 GO:0000229 cytoplasmic chromosome(GO:0000229) plastid chromosome(GO:0009508)
1.1 18.1 GO:0031012 extracellular matrix(GO:0031012)
1.0 10.2 GO:0031209 SCAR complex(GO:0031209)
1.0 6.0 GO:0071818 BAT3 complex(GO:0071818)
0.9 4.6 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.9 15.6 GO:0072686 mitotic spindle(GO:0072686)
0.9 20.4 GO:0005871 kinesin complex(GO:0005871)
0.8 2.5 GO:0000015 phosphopyruvate hydratase complex(GO:0000015)
0.8 8.2 GO:0016272 prefoldin complex(GO:0016272)
0.8 13.9 GO:0009531 secondary cell wall(GO:0009531)
0.8 18.5 GO:0016324 apical plasma membrane(GO:0016324)
0.8 7.2 GO:0035618 root hair(GO:0035618)
0.8 2.3 GO:0043186 P granule(GO:0043186) pole plasm(GO:0045495) germ plasm(GO:0060293)
0.7 12.0 GO:0070069 cytochrome complex(GO:0070069)
0.7 19.6 GO:0005875 microtubule associated complex(GO:0005875)
0.6 10.3 GO:0010287 plastoglobule(GO:0010287)
0.6 4.3 GO:0005968 Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.6 2.4 GO:0008622 epsilon DNA polymerase complex(GO:0008622)
0.6 6.5 GO:0098852 lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852)
0.6 3.5 GO:0010168 ER body(GO:0010168)
0.6 4.0 GO:0005787 signal peptidase complex(GO:0005787)
0.6 30.7 GO:0031977 thylakoid lumen(GO:0031977)
0.5 4.7 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.5 8.9 GO:0010319 stromule(GO:0010319)
0.5 7.3 GO:0031902 late endosome membrane(GO:0031902)
0.5 149.0 GO:0048046 apoplast(GO:0048046)
0.5 4.3 GO:0005677 chromatin silencing complex(GO:0005677)
0.5 1.4 GO:0005775 vacuolar lumen(GO:0005775)
0.4 3.1 GO:0005854 nascent polypeptide-associated complex(GO:0005854)
0.4 71.1 GO:0009505 plant-type cell wall(GO:0009505)
0.4 2.4 GO:0034388 Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.4 5.4 GO:0005720 nuclear heterochromatin(GO:0005720)
0.4 9.0 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.4 2.9 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.3 1.4 GO:0000172 ribonuclease MRP complex(GO:0000172) nucleolar ribonuclease P complex(GO:0005655) multimeric ribonuclease P complex(GO:0030681)
0.3 103.6 GO:0009534 chloroplast thylakoid(GO:0009534)
0.3 2.0 GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.3 7.3 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.3 7.5 GO:0005762 mitochondrial large ribosomal subunit(GO:0005762)
0.3 1.6 GO:0000938 GARP complex(GO:0000938)
0.3 1.8 GO:0009360 DNA polymerase III complex(GO:0009360)
0.3 694.6 GO:0005576 extracellular region(GO:0005576)
0.3 11.0 GO:0005811 lipid particle(GO:0005811)
0.3 2.1 GO:0005851 eukaryotic translation initiation factor 2B complex(GO:0005851)
0.3 6.3 GO:0000145 exocyst(GO:0000145)
0.2 4.0 GO:0016459 myosin complex(GO:0016459)
0.2 1.6 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.2 2.5 GO:0005880 nuclear microtubule(GO:0005880)
0.2 9.2 GO:0005797 Golgi medial cisterna(GO:0005797)
0.2 3.1 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.2 3.0 GO:0000176 nuclear exosome (RNase complex)(GO:0000176)
0.2 0.9 GO:0030126 COPI vesicle coat(GO:0030126) COPI-coated vesicle membrane(GO:0030663)
0.2 2.8 GO:0005769 early endosome(GO:0005769)
0.2 0.7 GO:0034515 proteasome storage granule(GO:0034515)
0.2 4.7 GO:0005938 cell cortex(GO:0005938) cytoplasmic region(GO:0099568)
0.2 2.9 GO:0098798 mitochondrial protein complex(GO:0098798)
0.2 7.0 GO:0009579 thylakoid(GO:0009579)
0.2 0.9 GO:0000778 condensed chromosome kinetochore(GO:0000777) condensed nuclear chromosome kinetochore(GO:0000778)
0.1 6.9 GO:0005874 microtubule(GO:0005874)
0.1 1.6 GO:0071782 endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827)
0.1 1.2 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.1 1.0 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.1 3.2 GO:0000137 Golgi cis cisterna(GO:0000137)
0.1 5.0 GO:0015629 actin cytoskeleton(GO:0015629)
0.1 39.5 GO:0009570 chloroplast stroma(GO:0009570)
0.1 2.2 GO:0000794 condensed nuclear chromosome(GO:0000794)
0.1 2.7 GO:0009524 phragmoplast(GO:0009524)
0.1 43.8 GO:0005783 endoplasmic reticulum(GO:0005783)
0.1 0.5 GO:0016281 eukaryotic translation initiation factor 4F complex(GO:0016281)
0.1 4.0 GO:0030176 integral component of endoplasmic reticulum membrane(GO:0030176)
0.1 0.8 GO:0005786 signal recognition particle, endoplasmic reticulum targeting(GO:0005786)
0.1 10.2 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.1 1.5 GO:0005686 U2 snRNP(GO:0005686)
0.1 2.2 GO:0005856 cytoskeleton(GO:0005856)
0.0 0.9 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 5.1 GO:0015934 large ribosomal subunit(GO:0015934)
0.0 6.1 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 0.3 GO:0031519 PcG protein complex(GO:0031519)
0.0 0.6 GO:0000786 nucleosome(GO:0000786)
0.0 4.9 GO:0005743 mitochondrial inner membrane(GO:0005743)
0.0 0.2 GO:0035145 exon-exon junction complex(GO:0035145)
0.0 0.1 GO:0043078 megasporocyte nucleus(GO:0043076) polar nucleus(GO:0043078)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
6.6 26.3 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
4.9 14.7 GO:0004560 alpha-L-fucosidase activity(GO:0004560)
4.8 14.5 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
4.6 18.4 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
4.2 16.9 GO:0050734 hydroxycinnamoyltransferase activity(GO:0050734)
4.2 16.9 GO:0050162 oxalate oxidase activity(GO:0050162)
4.2 96.3 GO:0102338 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
4.1 20.4 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
3.9 19.7 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
3.5 10.5 GO:0005344 oxygen transporter activity(GO:0005344)
3.3 13.4 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
3.3 13.3 GO:0009885 transmembrane receptor histidine kinase activity(GO:0009784) transmembrane histidine kinase cytokinin receptor activity(GO:0009885)
3.3 13.1 GO:0008395 steroid hydroxylase activity(GO:0008395)
3.2 41.8 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
3.1 12.5 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
3.1 12.3 GO:0046593 mandelonitrile lyase activity(GO:0046593)
2.9 17.1 GO:0052656 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
2.6 10.4 GO:0042299 lupeol synthase activity(GO:0042299)
2.6 31.2 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
2.6 7.7 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
2.5 10.0 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
2.3 4.7 GO:0009884 cytokinin receptor activity(GO:0009884)
2.3 9.0 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
2.2 13.4 GO:0004126 cytidine deaminase activity(GO:0004126)
2.2 26.4 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
2.2 6.5 GO:0009374 biotin binding(GO:0009374)
2.2 12.9 GO:0017057 6-phosphogluconolactonase activity(GO:0017057)
2.1 68.8 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
2.0 22.0 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
2.0 25.8 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
2.0 21.8 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
2.0 2.0 GO:0005034 osmosensor activity(GO:0005034)
2.0 11.7 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
1.9 15.5 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
1.9 3.8 GO:0036381 pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381)
1.9 9.5 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
1.9 7.5 GO:0030410 nicotianamine synthase activity(GO:0030410)
1.8 46.1 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
1.8 32.4 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
1.8 5.3 GO:0045430 chalcone isomerase activity(GO:0045430)
1.7 14.0 GO:0052634 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
1.7 8.5 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
1.7 13.4 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
1.7 18.3 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
1.7 10.0 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
1.6 6.2 GO:0004075 biotin carboxylase activity(GO:0004075)
1.5 32.5 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
1.5 4.6 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
1.5 7.7 GO:0042085 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
1.5 19.6 GO:0046556 alpha-L-arabinofuranosidase activity(GO:0046556)
1.4 35.9 GO:0004565 beta-galactosidase activity(GO:0004565)
1.4 4.3 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
1.4 28.3 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
1.4 4.2 GO:0004359 glutaminase activity(GO:0004359)
1.4 7.0 GO:0035197 siRNA binding(GO:0035197)
1.4 9.7 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
1.4 5.5 GO:0015245 fatty acid transporter activity(GO:0015245)
1.3 5.3 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
1.3 9.2 GO:0004345 glucose-6-phosphate dehydrogenase activity(GO:0004345)
1.3 3.9 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
1.3 6.5 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
1.3 7.6 GO:0003878 ATP citrate synthase activity(GO:0003878)
1.3 3.8 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
1.2 14.8 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
1.2 3.6 GO:0080045 quercetin 3'-O-glucosyltransferase activity(GO:0080045)
1.2 4.9 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
1.2 7.2 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
1.2 3.5 GO:0015185 gamma-aminobutyric acid transmembrane transporter activity(GO:0015185)
1.2 9.2 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
1.1 32.8 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
1.1 29.4 GO:0016168 chlorophyll binding(GO:0016168)
1.1 4.4 GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity(GO:0004729) protoporphyrinogen oxidase activity(GO:0070818)
1.1 5.5 GO:0008430 selenium binding(GO:0008430)
1.1 4.4 GO:0004475 mannose-1-phosphate guanylyltransferase activity(GO:0004475)
1.1 4.4 GO:0047215 indole-3-acetate beta-glucosyltransferase activity(GO:0047215)
1.1 15.4 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
1.1 29.5 GO:0008810 cellulase activity(GO:0008810)
1.1 4.3 GO:0070182 DNA polymerase binding(GO:0070182)
1.1 7.5 GO:0070568 guanylyltransferase activity(GO:0070568)
1.0 3.1 GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849)
1.0 3.1 GO:0003986 acetyl-CoA hydrolase activity(GO:0003986)
1.0 6.2 GO:0051002 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
1.0 5.1 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
1.0 3.1 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
1.0 9.9 GO:0002094 polyprenyltransferase activity(GO:0002094)
1.0 6.7 GO:0071933 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.9 7.5 GO:0008381 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.9 2.8 GO:0051010 microtubule plus-end binding(GO:0051010)
0.9 2.8 GO:0004150 dihydroneopterin aldolase activity(GO:0004150)
0.9 7.4 GO:0000095 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.9 8.3 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.9 2.6 GO:0047150 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.9 9.4 GO:0000254 C-4 methylsterol oxidase activity(GO:0000254)
0.8 5.1 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.8 2.5 GO:0015292 uniporter activity(GO:0015292)
0.8 10.0 GO:0019104 DNA N-glycosylase activity(GO:0019104)
0.8 9.1 GO:0047938 glucose-6-phosphate 1-epimerase activity(GO:0047938)
0.8 2.5 GO:0004634 phosphopyruvate hydratase activity(GO:0004634)
0.8 2.4 GO:0008936 nicotinamidase activity(GO:0008936)
0.8 11.8 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.7 5.1 GO:0046030 inositol trisphosphate phosphatase activity(GO:0046030)
0.7 8.0 GO:0016161 beta-amylase activity(GO:0016161)
0.7 5.1 GO:0051184 cofactor transporter activity(GO:0051184)
0.7 4.3 GO:0004663 Rab geranylgeranyltransferase activity(GO:0004663)
0.7 4.3 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.7 2.9 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.7 44.7 GO:0003777 microtubule motor activity(GO:0003777)
0.7 4.8 GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019)
0.7 7.5 GO:0016872 intramolecular lyase activity(GO:0016872)
0.7 8.2 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.7 3.4 GO:0010313 phytochrome binding(GO:0010313)
0.7 3.3 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.7 4.6 GO:0032977 membrane insertase activity(GO:0032977)
0.7 7.9 GO:0008061 chitin binding(GO:0008061)
0.6 6.4 GO:0008175 tRNA methyltransferase activity(GO:0008175)
0.6 3.8 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
0.6 1.9 GO:0070405 phosphatidylcholine binding(GO:0031210) quaternary ammonium group binding(GO:0050997) ammonium ion binding(GO:0070405)
0.6 3.1 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.6 40.1 GO:0004650 polygalacturonase activity(GO:0004650)
0.6 38.5 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.6 11.5 GO:0080031 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.6 1.7 GO:0015026 coreceptor activity(GO:0015026)
0.6 11.2 GO:0008146 sulfotransferase activity(GO:0008146)
0.6 1.7 GO:0050377 UDP-L-rhamnose synthase activity(GO:0010280) UDP-glucose 4,6-dehydratase activity(GO:0050377)
0.6 61.7 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.5 1.6 GO:1990883 rRNA cytidine N-acetyltransferase activity(GO:1990883)
0.5 2.2 GO:0004820 glycine-tRNA ligase activity(GO:0004820)
0.5 1.6 GO:0003861 3-isopropylmalate dehydratase activity(GO:0003861)
0.5 7.4 GO:0008139 nuclear localization sequence binding(GO:0008139)
0.5 3.7 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.5 10.2 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.5 7.7 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.5 3.3 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.5 24.8 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.5 1.4 GO:0000225 N-acetylglucosaminylphosphatidylinositol deacetylase activity(GO:0000225)
0.5 18.5 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.4 3.1 GO:0004849 uridine kinase activity(GO:0004849)
0.4 2.6 GO:0008443 phosphofructokinase activity(GO:0008443)
0.4 15.6 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.4 1.7 GO:0042781 3'-tRNA processing endoribonuclease activity(GO:0042781)
0.4 12.2 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.4 3.7 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.4 12.8 GO:0008266 poly(U) RNA binding(GO:0008266)
0.4 4.1 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.4 1.2 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.4 3.5 GO:0016464 chloroplast protein-transporting ATPase activity(GO:0016464)
0.4 8.2 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.4 3.4 GO:0010429 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.4 3.8 GO:0010340 carboxyl-O-methyltransferase activity(GO:0010340)
0.4 1.9 GO:0004001 adenosine kinase activity(GO:0004001)
0.4 1.5 GO:0019825 oxygen binding(GO:0019825)
0.4 7.2 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.3 4.5 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.3 2.8 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.3 2.0 GO:0003826 alpha-ketoacid dehydrogenase activity(GO:0003826)
0.3 4.0 GO:0003950 NAD+ ADP-ribosyltransferase activity(GO:0003950)
0.3 15.5 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.3 10.8 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.3 5.0 GO:0030983 mismatched DNA binding(GO:0030983)
0.3 0.9 GO:0051377 mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.3 0.9 GO:0046027 phospholipid:diacylglycerol acyltransferase activity(GO:0046027)
0.3 3.4 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.3 5.5 GO:0005199 structural constituent of cell wall(GO:0005199)
0.3 1.4 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.3 6.7 GO:0019199 transmembrane receptor protein kinase activity(GO:0019199)
0.3 1.1 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.3 2.7 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.3 2.7 GO:0033613 activating transcription factor binding(GO:0033613)
0.3 50.1 GO:0043531 ADP binding(GO:0043531)
0.3 2.1 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.3 15.3 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.3 1.0 GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity(GO:0004367)
0.3 1.0 GO:0050815 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.2 72.2 GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981)
0.2 3.4 GO:0008137 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.2 2.2 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.2 2.1 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.2 1.8 GO:0052622 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.2 5.5 GO:0051219 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.2 99.9 GO:0046983 protein dimerization activity(GO:0046983)
0.2 12.2 GO:0004683 calmodulin-dependent protein kinase activity(GO:0004683)
0.2 1.9 GO:0043023 ribosomal large subunit binding(GO:0043023)
0.2 2.3 GO:0061505 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.2 5.1 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)
0.2 0.6 GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity(GO:0004514)
0.2 2.5 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.2 9.7 GO:0004185 serine-type carboxypeptidase activity(GO:0004185) serine-type exopeptidase activity(GO:0070008)
0.2 2.4 GO:0008327 methyl-CpG binding(GO:0008327)
0.2 1.1 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.2 0.9 GO:0004471 malic enzyme activity(GO:0004470) malate dehydrogenase (decarboxylating) (NAD+) activity(GO:0004471) malate dehydrogenase (decarboxylating) (NADP+) activity(GO:0004473)
0.2 2.4 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.2 2.0 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.2 0.8 GO:0003785 actin monomer binding(GO:0003785)
0.2 5.4 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.2 0.8 GO:0030942 endoplasmic reticulum signal peptide binding(GO:0030942)
0.2 4.8 GO:0009975 cyclase activity(GO:0009975)
0.2 3.3 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.2 1.7 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.2 1.4 GO:0004526 ribonuclease P activity(GO:0004526)
0.2 0.8 GO:0005354 galactose transmembrane transporter activity(GO:0005354)
0.2 2.0 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.2 2.6 GO:0008308 voltage-gated anion channel activity(GO:0008308)
0.2 0.8 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.1 2.2 GO:0047631 ADP-ribose diphosphatase activity(GO:0047631)
0.1 2.9 GO:0003887 DNA-directed DNA polymerase activity(GO:0003887)
0.1 2.7 GO:0008171 O-methyltransferase activity(GO:0008171)
0.1 1.6 GO:0015140 malate transmembrane transporter activity(GO:0015140)
0.1 1.3 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.1 0.6 GO:0008493 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.1 1.4 GO:0017136 NAD-dependent histone deacetylase activity(GO:0017136) histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) NAD-dependent protein deacetylase activity(GO:0034979)
0.1 5.9 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.1 5.3 GO:0008320 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)
0.1 2.3 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.1 32.1 GO:0003735 structural constituent of ribosome(GO:0003735)
0.1 1.7 GO:0031545 procollagen-proline 4-dioxygenase activity(GO:0004656) procollagen-proline dioxygenase activity(GO:0019798) peptidyl-proline 4-dioxygenase activity(GO:0031545)
0.1 1.0 GO:0004619 phosphoglycerate mutase activity(GO:0004619)
0.1 1.1 GO:0000293 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.1 0.3 GO:0051752 phosphoglucan, water dikinase activity(GO:0051752)
0.1 4.2 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.1 5.8 GO:0005484 SNAP receptor activity(GO:0005484)
0.1 18.2 GO:0003924 GTPase activity(GO:0003924)
0.1 74.1 GO:0004672 protein kinase activity(GO:0004672)
0.1 2.0 GO:0031491 nucleosome binding(GO:0031491)
0.1 1.9 GO:0030599 pectinesterase activity(GO:0030599)
0.1 0.4 GO:0047493 sphingomyelin synthase activity(GO:0033188) ceramide cholinephosphotransferase activity(GO:0047493)
0.1 0.5 GO:0098599 palmitoyl hydrolase activity(GO:0098599)
0.1 1.5 GO:0008375 acetylglucosaminyltransferase activity(GO:0008375)
0.1 1.5 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.1 0.3 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.1 2.1 GO:0005085 guanyl-nucleotide exchange factor activity(GO:0005085)
0.1 0.7 GO:0071617 lysophospholipid acyltransferase activity(GO:0071617)
0.1 3.6 GO:0015079 potassium ion transmembrane transporter activity(GO:0015079)
0.1 2.6 GO:0003727 single-stranded RNA binding(GO:0003727)
0.1 0.6 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285) phosphatidylinositol phosphate kinase activity(GO:0016307)
0.1 8.7 GO:0009055 electron carrier activity(GO:0009055)
0.1 1.4 GO:0031490 chromatin DNA binding(GO:0031490)
0.1 3.6 GO:0051015 actin filament binding(GO:0051015)
0.1 0.4 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 0.2 GO:0045431 flavonol synthase activity(GO:0045431)
0.1 1.3 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.1 1.7 GO:0005179 hormone activity(GO:0005179)
0.0 0.9 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.0 1.2 GO:0016846 carbon-sulfur lyase activity(GO:0016846)
0.0 2.2 GO:0008276 protein methyltransferase activity(GO:0008276)
0.0 0.7 GO:0001871 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.0 0.7 GO:0015216 adenine nucleotide transmembrane transporter activity(GO:0000295) purine nucleotide transmembrane transporter activity(GO:0015216)
0.0 0.3 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.6 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 0.8 GO:0008408 3'-5' exonuclease activity(GO:0008408)
0.0 0.2 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.0 0.1 GO:0004829 threonine-tRNA ligase activity(GO:0004829)
0.0 0.4 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 1.0 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.0 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
2.8 8.4 PID IL12 2PATHWAY IL12-mediated signaling events
2.2 6.6 PID TCPTP PATHWAY Signaling events mediated by TCPTP
1.8 7.1 PID P53 REGULATION PATHWAY p53 pathway
1.5 7.5 NABA MATRISOME ASSOCIATED Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors
1.4 12.8 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
1.3 6.5 PID HES HEY PATHWAY Notch-mediated HES/HEY network
1.0 3.1 PID LYMPH ANGIOGENESIS PATHWAY VEGFR3 signaling in lymphatic endothelium
0.5 4.4 NABA MATRISOME Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins
0.5 1.1 SA CASPASE CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade.
0.3 0.9 PID AP1 PATHWAY AP-1 transcription factor network
0.1 0.4 SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES Genes related to the insulin receptor pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
2.2 6.5 REACTOME INTEGRATION OF ENERGY METABOLISM Genes involved in Integration of energy metabolism
1.7 8.4 REACTOME MHC CLASS II ANTIGEN PRESENTATION Genes involved in MHC class II antigen presentation
1.3 6.6 REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT Genes involved in SLC-mediated transmembrane transport
1.3 3.8 REACTOME GLYCOSPHINGOLIPID METABOLISM Genes involved in Glycosphingolipid metabolism
1.2 3.7 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
1.2 4.6 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
1.0 3.1 REACTOME ARMS MEDIATED ACTIVATION Genes involved in ARMS-mediated activation
0.9 2.7 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.9 4.4 REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES Genes involved in Antiviral mechanism by IFN-stimulated genes
0.8 2.5 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.7 3.4 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.5 1.9 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase
0.2 2.2 REACTOME MEIOTIC RECOMBINATION Genes involved in Meiotic Recombination
0.1 0.9 REACTOME NUCLEAR SIGNALING BY ERBB4 Genes involved in Nuclear signaling by ERBB4
0.0 0.3 REACTOME GENERIC TRANSCRIPTION PATHWAY Genes involved in Generic Transcription Pathway