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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G00250
Z-value: 1.31
Transcription factors associated with AT4G00250
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G00250
|
AT4G00250 | DNA-binding storekeeper protein-related transcriptional regulator |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT4G00250 | arTal_v1_Chr4_-_113982_113982 | -0.13 | 5.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 6.52 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 6.27 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 6.21 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 5.49 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 5.47 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr1_-_4682309_4682382 Show fit | 5.30 |
AT1G13650.3
AT1G13650.4 AT1G13650.2 AT1G13650.1 |
hypothetical protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 5.26 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 5.20 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 5.18 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 5.17 |
AT3G01500.3
|
carbonic anhydrase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G00250
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 55.7 | GO:0015979 | photosynthesis(GO:0015979) |
| 2.3 | 41.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 1.3 | 23.2 | GO:1901259 | chloroplast rRNA processing(GO:1901259) |
| 1.8 | 22.8 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.0 | 19.9 | GO:0006412 | translation(GO:0006412) |
| 1.0 | 17.4 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 17.3 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 2.9 | 17.1 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.3 | 15.9 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.4 | 14.1 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 107.7 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.2 | 64.4 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.4 | 57.1 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 51.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 48.0 | GO:0048046 | apoplast(GO:0048046) |
| 1.1 | 44.7 | GO:0010319 | stromule(GO:0010319) |
| 0.7 | 38.2 | GO:0010287 | plastoglobule(GO:0010287) |
| 1.0 | 27.9 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.9 | 26.8 | GO:0009523 | photosystem II(GO:0009523) |
| 0.1 | 24.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.1 | 53.5 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 29.0 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.8 | 25.3 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 3.9 | 23.2 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.6 | 17.7 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 1.0 | 14.6 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.2 | 13.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.5 | 12.8 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.1 | 12.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.9 | 12.1 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.6 | 20.7 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.6 | 5.6 | PID ATR PATHWAY | ATR signaling pathway |
| 0.6 | 3.8 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.8 | 3.3 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.3 | 2.8 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.3 | 1.8 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 1.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.4 | 1.1 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.2 | 1.1 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 1.0 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.9 | 29.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 7.9 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.7 | 3.5 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.3 | 2.7 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.4 | 2.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.7 | 2.0 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.6 | 1.9 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.4 | 1.7 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.4 | 1.7 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.2 | 1.2 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |