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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G60530

Z-value: 3.04

Transcription factors associated with AT3G60530

Gene Symbol Gene ID Gene Info
AT3G60530
AT3G60530 GATA transcription factor 4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
GATA4arTal_v1_Chr3_+_22373013_22373013-0.524.6e-03Click!

Activity profile of AT3G60530 motif

Sorted Z-values of AT3G60530 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_+_15983199 22.50 AT3G44300.1
NIT2
nitrilase 2
Chr2_+_6213972 12.66 AT2G14560.2
AT2G14560.1
LURP1
LURP-one-like protein (DUF567)
Chr2_+_6213617 12.41 AT2G14560.3
AT2G14560.4
LURP1
LURP-one-like protein (DUF567)
Chr4_+_11269985 11.96 AT4G21120.1
AT4G21120.2
AAT1
amino acid transporter 1
Chr4_-_16344818 11.69 AT4G34131.1
UGT73B3
UDP-glucosyl transferase 73B3
Chr2_+_18558885 10.87 AT2G44990.2
AT2G44990.3
AT2G44990.1
CCD7
carotenoid cleavage dioxygenase 7
Chr1_-_23690807 10.82 AT1G63840.1
AT1G63840
RING/U-box superfamily protein
Chr1_+_28177670 10.72 AT1G75040.1
PR5
pathogenesis-related protein 5
Chr3_+_995217 10.01 AT3G03870.1
AT3G03870
transmembrane protein
Chr3_+_995062 10.00 AT3G03870.2
AT3G03870
transmembrane protein
Chr1_+_630374 8.86 AT1G02850.3
AT1G02850.2
AT1G02850.1
AT1G02850.5
AT1G02850.4
BGLU11
beta glucosidase 11
Chr5_-_25813620 8.23 AT5G64570.3
AT5G64570.2
AT5G64570.1
XYL4
beta-D-xylosidase 4
Chr5_-_7828724 8.09 AT5G23240.1
AT5G23240
DNAJ heat shock N-terminal domain-containing protein
Chr1_-_20967162 8.03 AT1G56060.2
AT1G56060.1
AT1G56060
cysteine-rich/transmembrane domain protein B
Chr5_+_2355759 7.99 AT5G07440.2
AT5G07440.1
GDH2
glutamate dehydrogenase 2
Chr3_-_1956397 7.72 AT3G06420.1
ATG8H
Ubiquitin-like superfamily protein
Chr5_+_2355962 7.64 AT5G07440.3
GDH2
glutamate dehydrogenase 2
Chr5_-_26531176 7.63 AT5G66440.1
AT5G66440
tRNA-methyltransferase non-catalytic subunit trm6MTase subunit
Chr5_+_25322975 7.14 AT5G63130.2
AT5G63130.1
AT5G63130
Octicosapeptide/Phox/Bem1p family protein
Chr3_-_9313599 7.05 AT3G25610.1
AT3G25610
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Chr1_-_29248150 6.95 AT1G77770.1
AT1G77770.2
AT1G77770.3
AT1G77770
forkhead box protein, putative (DUF1644)
Chr1_-_21329944 6.94 AT1G57590.1
AT1G57590
Pectinacetylesterase family protein
Chr5_+_9480702 6.91 AT5G26940.3
AT5G26940.1
AT5G26940.2
DPD1
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr5_+_16801707 6.82 AT5G42010.2
AT5G42010.1
AT5G42010
Transducin/WD40 repeat-like superfamily protein
Chr5_+_19166859 6.80 AT5G47200.1
RAB1A
RAB GTPase homolog 1A
Chr5_+_9553300 6.76 AT5G27150.1
NHX1
Na+/H+ exchanger 1
Chr2_-_10127589 6.72 AT2G23790.1
AT2G23790
calcium uniporter (DUF607)
Chr2_+_837801 6.67 AT2G02870.3
AT2G02870.1
AT2G02870.2
AT2G02870
Galactose oxidase/kelch repeat superfamily protein
Chr1_+_17643976 6.62 AT1G47890.1
RLP7
receptor like protein 7
Chr1_-_3419691 6.44 AT1G10410.1
AT1G10410
CW14 protein (DUF1336)
Chr2_+_8550253 6.43 AT2G19810.1
OZF1
CCCH-type zinc finger family protein
Chr4_+_17955110 6.38 AT4G38340.2
AT4G38340
Plant regulator RWP-RK family protein
Chr3_-_16656575 6.36 AT3G45410.1
AT3G45410
Concanavalin A-like lectin protein kinase family protein
Chr4_-_13222376 6.34 AT4G26080.1
ABI1
Protein phosphatase 2C family protein
Chr1_-_4892332 6.28 AT1G14330.1
AT1G14330
Galactose oxidase/kelch repeat superfamily protein
Chr5_-_24317935 6.23 AT5G60460.2
AT5G60460
Preprotein translocase Sec, Sec61-beta subunit protein
Chr4_+_12419394 6.23 AT4G23885.1
AT4G23885
hypothetical protein
Chr5_-_24318241 6.16 AT5G60460.1
AT5G60460
Preprotein translocase Sec, Sec61-beta subunit protein
Chr5_+_26725839 6.16 AT5G66930.3
AT5G66930.2
AT5G66930.1
AT5G66930
meiotically up-regulated protein
Chr1_+_2416178 6.10 AT1G07810.1
ECA1
ER-type Ca2+-ATPase 1
Chr4_+_8545025 6.09 AT4G14950.1
AT4G14950.3
AT4G14950.2
KMS1
SNARE associated Golgi protein family
Chr4_+_17954710 6.09 AT4G38340.1
AT4G38340
Plant regulator RWP-RK family protein
Chr5_-_19977620 6.09 AT5G49280.1
AT5G49280
hydroxyproline-rich glycoprotein family protein
Chr5_-_924728 6.03 AT5G03630.1
ATMDAR2
Pyridine nucleotide-disulfide oxidoreductase family protein
Chr1_-_13365172 5.96 AT1G35910.1
TPPD
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr4_+_17326537 5.85 AT4G36760.1
AT4G36760.3
AT4G36760.2
APP1
aminopeptidase P1
Chr3_-_10120645 5.84 AT3G27330.1
AT3G27330
zinc finger (C3HC4-type RING finger) family protein
Chr5_+_9480308 5.80 AT5G26940.4
DPD1
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr5_+_14056437 5.73 AT5G35920.1
CYP79A4P
cytochrome P450, family 79, subfamily A, polypeptide 4 pseudogene
Chr2_-_16702336 5.73 AT2G40000.1
HSPRO2
ortholog of sugar beet HS1 PRO-1 2
Chr1_+_12584345 5.72 AT1G34420.1
AT1G34420
leucine-rich repeat transmembrane protein kinase family protein
Chr3_+_20244284 5.66 AT3G54680.1
AT3G54680
proteophosphoglycan-like protein
Chr5_-_23725585 5.63 AT5G58730.1
Mik
pfkB-like carbohydrate kinase family protein
Chr5_-_4954970 5.54 AT5G15260.2
AT5G15260.1
AT5G15260
ribosomal protein L34e superfamily protein
Chr5_+_20949291 5.52 AT5G51570.1
AT5G51570
SPFH/Band 7/PHB domain-containing membrane-associated protein family
Chr2_+_15890869 5.48 AT2G37970.1
SOUL-1
SOUL heme-binding family protein
Chr1_+_24442388 5.39 AT1G65730.1
YSL7
YELLOW STRIPE like 7
Chr5_-_9944942 5.33 AT5G27920.1
AT5G27920
F-box family protein
Chr4_+_7641378 5.32 AT4G13110.1
AT4G13110
BSD domain-containing protein
Chr2_+_6612480 5.27 AT2G15230.1
LIP1
lipase 1
Chr4_+_18185437 5.21 AT4G39030.1
EDS5
MATE efflux family protein
Chr1_+_18400003 5.12 AT1G49720.1
AT1G49720.2
AT1G49720.3
ABF1
abscisic acid responsive element-binding factor 1
Chr2_+_315648 5.06 AT2G01710.2
AT2G01710.1
AT2G01710
Chaperone DnaJ-domain superfamily protein
Chr1_-_24775944 5.05 AT1G66410.3
AT1G66410.4
AT1G66410.1
AT1G66410.2
CAM4
calmodulin 4
Chr4_-_13086386 5.05 AT4G25670.2
AT4G25670
stress response NST1-like protein
Chr3_+_3751558 5.04 AT3G11880.2
AT3G11880.4
AT3G11880.3
AT3G11880.1
AT3G11880
transmembrane protein, putative (Protein of unknown function DUF2359, transmembrane)
Chr1_+_7645610 5.04 AT1G21750.1
AT1G21750.2
PDIL1-1
PDI-like 1-1
Chr2_+_7692396 5.02 AT2G17705.1
AT2G17705
methionine-S-oxide reductase
Chr4_-_13087090 4.93 AT4G25670.1
AT4G25670
stress response NST1-like protein
Chr5_-_2985509 4.86 AT5G09620.2
AT5G09620
Octicosapeptide/Phox/Bem1p family protein
Chr5_-_2985760 4.84 AT5G09620.1
AT5G09620
Octicosapeptide/Phox/Bem1p family protein
Chr5_-_23842860 4.76 AT5G59050.4
AT5G59050.1
AT5G59050.3
AT5G59050
G patch domain protein
Chr3_+_57545 4.75 AT3G01170.1
AT3G01170.2
AT3G01170
Ribosomal protein L34e superfamily protein
Chr2_-_15750135 4.71 AT2G37520.1
AT2G37520
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein
Chr3_+_2923518 4.66 AT3G09520.1
EXO70H4
exocyst subunit exo70 family protein H4
Chr3_+_19265141 4.63 AT3G51910.1
HSFA7A
heat shock transcription factor A7A
Chr1_+_25041833 4.63 AT1G67070.1
AT1G67070.2
DIN9
Mannose-6-phosphate isomerase, type I
Chr4_+_17021572 4.62 AT4G35940.2
AT4G35940.7
AT4G35940.6
AT4G35940.8
AT4G35940
hypothetical protein
Chr4_-_7786161 4.60 AT4G13395.1
RTFL12
ROTUNDIFOLIA like 12
Chr1_-_26279255 4.59 AT1G69810.2
AT1G69810.1
WRKY36
WRKY DNA-binding protein 36
Chr5_+_5652171 4.59 AT5G17190.1
AT5G17190
B-cell receptor-associated-like protein
Chr5_+_17459873 4.59 AT5G43460.2
AT5G43460.1
AT5G43460
HR-like lesion-inducing protein-like protein
Chr3_-_21251101 4.58 AT3G57410.6
AT3G57410.2
AT3G57410.7
AT3G57410.1
AT3G57410.4
AT3G57410.10
AT3G57410.8
AT3G57410.3
AT3G57410.5
AT3G57410.9
VLN3
villin 3
Chr4_-_7011406 4.57 AT4G11600.1
GPX6
glutathione peroxidase 6
Chr1_+_29121226 4.54 AT1G77500.1
AT1G77500
DUF630 family protein, putative (DUF630 and DUF632)
Chr1_-_7248423 4.41 AT1G20840.1
AT1G20840.2
TMT1
tonoplast monosaccharide transporter1
Chr4_+_17021380 4.41 AT4G35940.3
AT4G35940.1
AT4G35940.5
AT4G35940.4
AT4G35940
hypothetical protein
Chr1_+_28590325 4.40 AT1G76185.1
AT1G76185
NADH-ubiquinone oxidoreductase chain
Chr5_-_5358789 4.33 AT5G16370.1
AAE5
acyl activating enzyme 5
Chr5_-_19388562 4.33 AT5G47880.2
AT5G47880.1
ERF1-1
eukaryotic release factor 1-1
Chr5_+_23192872 4.31 AT5G57240.3
AT5G57240.5
AT5G57240.4
AT5G57240.1
ORP4C
OSBP(oxysterol binding protein)-related protein 4C
Chr3_-_17739870 4.31 AT3G48050.2
AT3G48050.1
SUO
protein SUO
Chr5_-_7874505 4.30 AT5G23390.1
AT5G23390
polygalacturonase inhibitor (DUF639)
Chr3_+_3019249 4.29 AT3G09840.1
CDC48
cell division cycle 48
Chr5_+_16826542 4.26 AT5G42090.1
AT5G42090
Lung seven transmembrane receptor family protein
Chr5_-_23842677 4.23 AT5G59050.2
AT5G59050
G patch domain protein
Chr1_+_2274926 4.23 AT1G07400.1
AT1G07400
HSP20-like chaperones superfamily protein
Chr2_+_81436 4.23 AT2G01100.2
AT2G01100.1
AT2G01100.3
AT2G01100
FAM133-like protein
Chr2_+_14756511 4.22 AT2G35020.1
GlcNAc1pUT2
N-acetylglucosamine-1-phosphate uridylyltransferase 2
Chr5_-_5473592 4.19 AT5G16680.1
AT5G16680
RING/FYVE/PHD zinc finger superfamily protein
Chr5_-_5473054 4.19 AT5G16680.2
AT5G16680
RING/FYVE/PHD zinc finger superfamily protein
Chr1_+_3370402 4.14 AT1G10290.1
ADL6
dynamin-like protein 6
Chr5_-_3447278 4.12 AT5G10930.1
CIPK5
CBL-interacting protein kinase 5
Chr2_+_10281718 4.10 AT2G24180.1
CYP71B6
cytochrome p450 71b6
Chr1_-_1718909 4.08 AT1G05720.1
AT1G05720
selenoprotein family protein
Chr4_+_8218261 4.07 AT4G14270.2
AT4G14270
polyadenylate-binding protein interacting protein
Chr5_+_7749030 4.05 AT5G23090.2
AT5G23090.1
AT5G23090.4
AT5G23090.5
AT5G23090.3
NF-YB13
nuclear factor Y, subunit B13
Chr4_+_8218083 4.05 AT4G14270.1
AT4G14270
polyadenylate-binding protein interacting protein
Chr1_+_9184567 4.05 AT1G26580.1
AT1G26580.2
AT1G26580.3
AT1G26580
ELM2 domain protein
Chr1_+_12530815 4.03 AT1G34340.1
AT1G34340
alpha/beta-Hydrolases superfamily protein
Chr1_+_25042135 4.02 AT1G67070.3
DIN9
Mannose-6-phosphate isomerase, type I
Chr3_+_4012107 3.99 AT3G12630.1
SAP5
A20/AN1-like zinc finger family protein
Chr5_-_22764576 3.94 AT5G56240.1
AT5G56240.3
AT5G56240.2
AT5G56240
hapless protein
Chr5_-_1149284 3.94 AT5G04180.1
ACA3
alpha carbonic anhydrase 3
Chr1_+_19987117 3.89 AT1G53570.6
AT1G53570.2
AT1G53570.1
AT1G53570.7
AT1G53570.5
AT1G53570.4
AT1G53570.3
MAP3KA
mitogen-activated protein kinase kinase kinase 3
Chr3_+_23051544 3.88 AT3G62290.2
AT3G62290.3
AT3G62290.1
ARFA1E
ADP-ribosylation factor A1E
Chr1_-_24560936 3.88 AT1G65980.2
AT1G65980.1
TPX1
thioredoxin-dependent peroxidase 1
Chr2_-_11777529 3.87 AT2G27580.2
AT2G27580.1
AT2G27580
A20/AN1-like zinc finger family protein
Chr5_-_18743077 3.87 AT5G46230.1
AT5G46230
hypothetical protein (Protein of unknown function, DUF538)
Chr1_+_8948232 3.86 AT1G25480.1
AT1G25480
aluminum activated malate transporter family protein
Chr3_+_4184569 3.83 AT3G13062.3
AT3G13062.2
AT3G13062
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr3_+_4184340 3.78 AT3G13062.1
AT3G13062
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr4_+_154635 3.72 AT4G00355.1
AT4G00355.2
AT4G00355.4
ATI2
mesoderm induction early response protein
Chr3_+_7445604 3.72 AT3G21220.1
AT3G21220.2
MKK5
MAP kinase kinase 5
Chr5_-_3595003 3.72 AT5G11260.2
AT5G11260.1
HY5
Basic-leucine zipper (bZIP) transcription factor family protein
Chr5_-_5262840 3.71 AT5G16110.1
AT5G16110
hypothetical protein
Chr1_+_9215770 3.69 AT1G26670.1
VTI1B
Vesicle transport v-SNARE family protein
Chr5_+_3854770 3.68 AT5G11950.2
AT5G11950.4
LOG8
Putative lysine decarboxylase family protein
Chr1_+_4748831 3.67 AT1G13880.1
AT1G13880.3
AT1G13880.2
AT1G13880
ELM2 domain-containing protein
Chr2_-_16568822 3.65 AT2G39720.1
AT2G39720.2
RHC2A
RING-H2 finger C2A
Chr5_-_19412077 3.64 AT5G47940.1
AT5G47940
40S ribosomal protein S27
Chr4_-_16862420 3.64 AT4G35510.1
AT4G35510
PHD finger-like protein
Chr1_-_22794714 3.64 AT1G61730.1
AT1G61730
DNA-binding storekeeper protein-related transcriptional regulator
Chr5_+_23967217 3.62 AT5G59430.2
AT5G59430.4
AT5G59430.3
TRP1
telomeric repeat binding protein 1
Chr5_-_1925407 3.61 AT5G06300.1
LOG7
Putative lysine decarboxylase family protein
Chr1_+_8079287 3.59 AT1G22840.1
AT1G22840.2
CYTC-1
CYTOCHROME C-1
Chr1_-_22266076 3.59 AT1G60430.2
AT1G60430.1
AT1G60430.4
AT1G60430.3
ARPC3
actin-related protein C3
Chr2_-_14178800 3.58 AT2G33470.1
AT2G33470.2
GLTP1
glycolipid transfer protein 1
Chr2_-_9767 3.57 AT2G01023.1
AT2G01023
hypothetical protein
Chr1_-_18269448 3.56 AT1G49360.1
AT1G49360.5
AT1G49360.2
AT1G49360.4
AT1G49360.3
AT1G49360
F-box family protein
Chr3_-_14879792 3.55 AT3G42790.1
AL3
alfin-like 3
Chr1_+_10994243 3.55 AT1G30890.1
AT1G30890
Integral membrane HRF1 family protein
Chr2_+_6927024 3.54 AT2G15900.1
AT2G15900
phox domain-containing protein
Chr3_+_19013389 3.54 AT3G51180.1
AT3G51180
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr1_+_5998765 3.52 AT1G17460.3
AT1G17460.1
AT1G17460.2
TRFL3
TRF-like 3
Chr4_-_17279271 3.52 AT4G36640.2
AT4G36640.3
AT4G36640.1
AT4G36640
Sec14p-like phosphatidylinositol transfer family protein
Chr4_+_154872 3.51 AT4G00355.3
ATI2
mesoderm induction early response protein
Chr2_+_15641906 3.51 AT2G37250.1
ADK
adenosine kinase
Chr5_-_21634163 3.50 AT5G53300.2
AT5G53300.4
AT5G53300.1
AT5G53300.3
UBC10
ubiquitin-conjugating enzyme 10
Chr3_+_22134951 3.49 AT3G59920.1
GDI2
RAB GDP dissociation inhibitor 2
Chr5_+_16846150 3.48 AT5G42150.1
AT5G42150
Glutathione S-transferase family protein
Chr3_-_5670842 3.48 AT3G16640.1
TCTP
translationally controlled tumor protein
Chr1_+_10994440 3.48 AT1G30890.2
AT1G30890
Integral membrane HRF1 family protein
Chr5_-_22763923 3.48 AT5G56240.4
AT5G56240
hapless protein
Chr5_+_23967875 3.47 AT5G59430.5
TRP1
telomeric repeat binding protein 1
Chr2_+_16556801 3.45 AT2G39705.1
RTFL8
ROTUNDIFOLIA like 8
Chr1_+_26226731 3.45 AT1G69720.1
AT1G69720.2
HO3
heme oxygenase 3
Chr4_+_11797548 3.45 AT4G22330.1
ATCES1
Alkaline phytoceramidase (aPHC)
Chr5_+_23967611 3.45 AT5G59430.1
TRP1
telomeric repeat binding protein 1
Chr3_-_5892216 3.45 AT3G17240.2
AT3G17240.3
AT3G17240.1
mtLPD2
lipoamide dehydrogenase 2
Chr1_+_20201806 3.44 AT1G54115.1
CCX4
cation calcium exchanger 4
Chr1_+_10252241 3.43 AT1G29310.1
AT1G29310.2
AT1G29310
SecY protein transport family protein
Chr5_+_25706608 3.42 AT5G64270.1
AT5G64270
splicing factor
Chr2_-_17992047 3.41 AT2G43290.1
MSS3
Calcium-binding EF-hand family protein
Chr3_-_21544084 3.41 AT3G58170.1
BS14A
BET1P/SFT1P-like protein 14A
Chr3_+_19028106 3.40 AT3G51250.1
AT3G51250.2
AT3G51250
Senescence/dehydration-associated protein-like protein
Chr1_+_29975667 3.39 AT1G79660.1
AT1G79660
ephrin-A3 protein
Chr5_+_9984044 3.37 AT5G27950.2
AT5G27950.1
AT5G27950
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_-_2589184 3.37 AT4G05050.3
AT4G05050.4
AT4G05050.2
AT4G05050.1
UBQ11
ubiquitin 11
Chr2_-_13586621 3.34 AT2G31955.3
AT2G31955.6
AT2G31955.1
AT2G31955.4
AT2G31955.2
AT2G31955.5
CNX2
cofactor of nitrate reductase and xanthine dehydrogenase 2
Chr4_-_16021230 3.34 AT4G33210.1
SLOMO
F-box family protein
Chr5_+_22923804 3.33 AT5G56630.1
PFK7
phosphofructokinase 7
Chr1_+_7142972 3.33 AT1G20620.1
AT1G20620.5
AT1G20620.2
AT1G20620.4
AT1G20620.6
CAT3
catalase 3
Chr1_+_28516519 3.32 AT1G75950.1
SKP1
S phase kinase-associated protein 1
Chr2_+_5741592 3.31 AT2G13790.1
SERK4
somatic embryogenesis receptor-like kinase 4
Chr2_+_12131544 3.31 AT2G28370.1
AT2G28370
Uncharacterized protein family (UPF0497)
Chr2_-_17438168 3.27 AT2G41800.1
AT2G41800
imidazolonepropionase (Protein of unknown function, DUF642)
Chr3_+_6731329 3.26 AT3G19420.1
PEN2
PTEN 2
Chr1_+_7143805 3.26 AT1G20620.7
CAT3
catalase 3
Chr2_-_14990931 3.25 AT2G35658.2
AT2G35658.3
AT2G35658.1
AT2G35658
transmembrane protein
Chr3_-_216666 3.25 AT3G01540.3
AT3G01540.4
AT3G01540.1
AT3G01540.2
DRH1
DEAD box RNA helicase 1
Chr1_-_4594451 3.24 AT1G13390.1
AT1G13390.2
AT1G13390
translocase subunit seca
Chr5_+_25910015 3.23 AT5G64813.2
AT5G64813.1
AT5G64813.3
LIP1
Ras-related small GTP-binding family protein
Chr5_-_17667451 3.22 AT5G43900.3
AT5G43900.2
MYA2
myosin 2
Chr1_+_9492849 3.22 AT1G27330.1
AT1G27330
Ribosome associated membrane protein RAMP4
Chr5_+_16441808 3.20 AT5G41080.2
GDPD2
PLC-like phosphodiesterases superfamily protein
Chr2_-_11952248 3.19 AT2G28060.3
AT2G28060.4
AT2G28060.1
AT2G28060.2
AT2G28060
5'-AMP-activated protein kinase beta-2 subunit protein
Chr2_-_15623104 3.19 AT2G37200.1
AT2G37200.2
AT2G37200
Uncharacterized protein family (UPF0497)
Chr5_+_5392755 3.15 AT5G16510.1
RGP5
Alpha-1,4-glucan-protein synthase family protein
Chr5_+_3854964 3.14 AT5G11950.1
LOG8
Putative lysine decarboxylase family protein
Chr3_-_6614107 3.14 AT3G19130.1
RBP47B
RNA-binding protein 47B
Chr1_+_6710851 3.13 AT1G19397.1
AT1G19397
transmembrane protein
Chr4_-_15247997 3.12 AT4G31420.1
AT4G31420.2
AT4G31420
Zinc finger protein 622
Chr1_+_26814260 3.12 AT1G71100.1
RSW10
Ribose 5-phosphate isomerase, type A protein
Chr1_+_30138818 3.11 AT1G80120.1
AT1G80120
LURP-one-like protein (DUF567)
Chr2_-_13800099 3.11 AT2G32510.1
MAPKKK17
mitogen-activated protein kinase kinase kinase 17
Chr5_+_9377249 3.10 AT5G26600.1
AT5G26600.2
AT5G26600
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Chr5_-_20169923 3.10 AT5G49665.1
AT5G49665
Zinc finger (C3HC4-type RING finger) family protein
Chr5_+_5392576 3.09 AT5G16510.2
RGP5
Alpha-1,4-glucan-protein synthase family protein
Chr3_-_21639136 3.09 AT3G58500.1
PP2A-4
protein phosphatase 2A-4

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G60530

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
4.0 12.0 GO:0015802 basic amino acid transport(GO:0015802)
3.6 10.9 GO:0016118 tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124)
2.9 8.6 GO:0000032 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506)
2.8 8.5 GO:0009107 lipoate biosynthetic process(GO:0009107)
2.5 22.5 GO:0051410 detoxification of nitrogen compound(GO:0051410)
2.2 6.6 GO:0018119 protein nitrosylation(GO:0017014) peptidyl-cysteine S-nitrosylation(GO:0018119) peptidyl-cysteine S-trans-nitrosylation(GO:0035606)
2.1 20.5 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
1.7 6.8 GO:0010351 lithium ion transport(GO:0010351)
1.7 6.7 GO:0070509 calcium ion import(GO:0070509)
1.6 6.3 GO:0046475 glycerophospholipid catabolic process(GO:0046475)
1.5 6.1 GO:0010042 response to manganese ion(GO:0010042)
1.5 4.5 GO:0034067 protein localization to Golgi apparatus(GO:0034067)
1.3 1.3 GO:0018377 N-terminal protein lipidation(GO:0006498) N-terminal protein myristoylation(GO:0006499) protein myristoylation(GO:0018377)
1.3 12.7 GO:0006308 DNA catabolic process(GO:0006308)
1.2 3.7 GO:0033240 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
1.2 3.7 GO:0031539 positive regulation of anthocyanin metabolic process(GO:0031539)
1.2 6.1 GO:0006788 heme oxidation(GO:0006788)
1.2 6.0 GO:0060151 peroxisome localization(GO:0060151)
1.1 5.7 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
1.1 4.3 GO:0002184 cytoplasmic translational termination(GO:0002184)
1.1 3.2 GO:0010482 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
1.0 8.2 GO:0031222 arabinan catabolic process(GO:0031222)
1.0 15.6 GO:0006538 glutamate catabolic process(GO:0006538)
0.9 4.4 GO:0009590 detection of gravity(GO:0009590)
0.9 8.7 GO:0010264 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.8 2.3 GO:2000693 positive regulation of seed maturation(GO:2000693)
0.7 2.2 GO:0080182 histone H3-K4 trimethylation(GO:0080182)
0.7 3.6 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.7 3.6 GO:0035627 ceramide transport(GO:0035627)
0.7 2.8 GO:0080141 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.7 5.6 GO:0032456 endocytic recycling(GO:0032456)
0.7 3.3 GO:0006777 Mo-molybdopterin cofactor biosynthetic process(GO:0006777) Mo-molybdopterin cofactor metabolic process(GO:0019720) molybdopterin cofactor biosynthetic process(GO:0032324) molybdopterin cofactor metabolic process(GO:0043545) prosthetic group metabolic process(GO:0051189)
0.7 4.6 GO:0051014 actin filament severing(GO:0051014)
0.6 8.9 GO:0031053 primary miRNA processing(GO:0031053)
0.6 16.6 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.6 5.2 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.6 1.7 GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.5 3.3 GO:0035335 peptidyl-tyrosine dephosphorylation(GO:0035335)
0.5 2.2 GO:1902583 multi-organism intracellular transport(GO:1902583)
0.5 2.7 GO:0042351 'de novo' GDP-L-fucose biosynthetic process(GO:0042351)
0.5 4.8 GO:0009920 cell plate formation involved in plant-type cell wall biogenesis(GO:0009920)
0.5 1.6 GO:0007019 microtubule depolymerization(GO:0007019) metaxylem development(GO:0090058)
0.5 3.1 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.5 2.0 GO:0070676 intralumenal vesicle formation(GO:0070676)
0.5 6.0 GO:0017157 regulation of exocytosis(GO:0017157)
0.5 10.4 GO:0031540 regulation of anthocyanin biosynthetic process(GO:0031540)
0.5 2.9 GO:0046339 diacylglycerol metabolic process(GO:0046339)
0.5 9.2 GO:0071218 cellular response to misfolded protein(GO:0071218)
0.4 8.1 GO:0033356 UDP-L-arabinose metabolic process(GO:0033356)
0.4 10.5 GO:0000162 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.4 1.7 GO:1902914 regulation of protein polyubiquitination(GO:1902914) positive regulation of protein polyubiquitination(GO:1902916)
0.4 7.8 GO:0061157 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.4 3.4 GO:0010508 positive regulation of autophagy(GO:0010508)
0.4 2.1 GO:0010452 histone H3-K36 methylation(GO:0010452)
0.4 2.1 GO:0001732 formation of cytoplasmic translation initiation complex(GO:0001732)
0.4 4.6 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.4 11.2 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.4 2.0 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.4 4.6 GO:0002221 pattern recognition receptor signaling pathway(GO:0002221)
0.4 2.7 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.4 2.6 GO:0006552 leucine catabolic process(GO:0006552)
0.4 5.6 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.4 2.2 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.4 5.3 GO:0000266 mitochondrial fission(GO:0000266)
0.4 0.7 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.3 1.4 GO:0035305 negative regulation of dephosphorylation(GO:0035305) negative regulation of protein dephosphorylation(GO:0035308)
0.3 7.9 GO:0030042 actin filament depolymerization(GO:0030042)
0.3 7.4 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.3 3.0 GO:0046512 sphingosine metabolic process(GO:0006670) diol metabolic process(GO:0034311) diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.3 3.0 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.3 1.0 GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly(GO:0033615)
0.3 5.2 GO:0009697 salicylic acid biosynthetic process(GO:0009697)
0.3 1.2 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.3 2.6 GO:0006488 dolichol-linked oligosaccharide biosynthetic process(GO:0006488)
0.3 2.7 GO:0043462 regulation of ATPase activity(GO:0043462)
0.3 0.8 GO:0055047 generative cell mitosis(GO:0055047)
0.3 1.8 GO:0051452 vacuolar acidification(GO:0007035) intracellular pH reduction(GO:0051452)
0.3 1.8 GO:0010155 regulation of proton transport(GO:0010155)
0.3 3.3 GO:0018342 protein prenylation(GO:0018342) prenylation(GO:0097354)
0.3 1.8 GO:0060866 leaf abscission(GO:0060866)
0.2 1.5 GO:0006228 UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051)
0.2 6.8 GO:0006995 cellular response to nitrogen starvation(GO:0006995)
0.2 3.9 GO:0010105 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.2 3.1 GO:0034063 stress granule assembly(GO:0034063)
0.2 0.9 GO:0032889 regulation of vacuole fusion, non-autophagic(GO:0032889) vacuole fusion, non-autophagic(GO:0042144) vacuole fusion(GO:0097576)
0.2 0.7 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.2 0.7 GO:0046704 CDP metabolic process(GO:0046704) CDP biosynthetic process(GO:0046705)
0.2 3.3 GO:0045910 negative regulation of DNA recombination(GO:0045910)
0.2 0.7 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.2 3.6 GO:0098876 vesicle-mediated transport to the plasma membrane(GO:0098876)
0.2 1.8 GO:0006621 protein retention in ER lumen(GO:0006621)
0.2 3.9 GO:0010037 response to carbon dioxide(GO:0010037)
0.2 2.7 GO:0061572 actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572)
0.2 2.2 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.2 2.4 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.2 0.2 GO:0051645 Golgi localization(GO:0051645)
0.2 6.0 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.2 2.7 GO:0045040 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.2 1.1 GO:0051775 response to redox state(GO:0051775)
0.2 3.1 GO:0046134 pyrimidine ribonucleoside biosynthetic process(GO:0046132) pyrimidine nucleoside biosynthetic process(GO:0046134)
0.2 3.1 GO:0023014 signal transduction by protein phosphorylation(GO:0023014)
0.2 3.6 GO:0034314 Arp2/3 complex-mediated actin nucleation(GO:0034314)
0.2 1.9 GO:0002183 cytoplasmic translational initiation(GO:0002183)
0.2 0.6 GO:0030837 negative regulation of actin filament polymerization(GO:0030837) sequestering of actin monomers(GO:0042989)
0.2 27.5 GO:0009751 response to salicylic acid(GO:0009751)
0.2 11.7 GO:0010941 regulation of cell death(GO:0010941)
0.2 1.1 GO:0009584 detection of visible light(GO:0009584)
0.2 3.0 GO:0010152 pollen maturation(GO:0010152)
0.1 1.5 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.1 8.1 GO:0006888 ER to Golgi vesicle-mediated transport(GO:0006888)
0.1 1.9 GO:0072506 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.1 2.1 GO:0071545 inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545)
0.1 2.2 GO:0008285 negative regulation of cell proliferation(GO:0008285)
0.1 0.4 GO:0048358 mucilage pectin biosynthetic process(GO:0048358)
0.1 0.4 GO:0010372 positive regulation of gibberellin biosynthetic process(GO:0010372)
0.1 6.7 GO:0010256 endomembrane system organization(GO:0010256)
0.1 1.3 GO:0051865 protein autoubiquitination(GO:0051865)
0.1 0.6 GO:0006107 oxaloacetate metabolic process(GO:0006107)
0.1 4.7 GO:0006354 DNA-templated transcription, elongation(GO:0006354)
0.1 0.8 GO:0015689 molybdate ion transport(GO:0015689)
0.1 2.9 GO:0046834 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.1 1.6 GO:0018126 protein hydroxylation(GO:0018126) peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) peptidyl-proline hydroxylation(GO:0019511)
0.1 8.2 GO:0006818 hydrogen transport(GO:0006818) proton transport(GO:0015992) hydrogen ion transmembrane transport(GO:1902600)
0.1 3.7 GO:0045292 mRNA cis splicing, via spliceosome(GO:0045292)
0.1 2.9 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.1 2.3 GO:0051260 protein homooligomerization(GO:0051260)
0.1 6.8 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.1 0.6 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 1.6 GO:0018231 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.1 1.3 GO:0007602 phototransduction(GO:0007602) red, far-red light phototransduction(GO:0009585)
0.1 0.9 GO:0033320 UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.1 0.9 GO:0006491 N-glycan processing(GO:0006491)
0.1 1.7 GO:0052546 cell wall pectin metabolic process(GO:0052546)
0.1 2.1 GO:0009846 pollen germination(GO:0009846)
0.1 1.0 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of protein serine/threonine kinase activity(GO:0071901) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.1 3.1 GO:1900674 ethylene metabolic process(GO:0009692) ethylene biosynthetic process(GO:0009693) cellular alkene metabolic process(GO:0043449) alkene biosynthetic process(GO:0043450) olefin metabolic process(GO:1900673) olefin biosynthetic process(GO:1900674)
0.1 4.7 GO:0006887 exocytosis(GO:0006887)
0.1 1.0 GO:0010088 phloem development(GO:0010088)
0.1 0.8 GO:0051365 cellular response to potassium ion starvation(GO:0051365)
0.1 3.4 GO:0030705 cytoskeleton-dependent intracellular transport(GO:0030705)
0.1 2.4 GO:0007264 small GTPase mediated signal transduction(GO:0007264)
0.1 6.3 GO:0010119 regulation of stomatal movement(GO:0010119)
0.1 2.9 GO:0010017 red or far-red light signaling pathway(GO:0010017)
0.1 1.4 GO:0050821 protein stabilization(GO:0050821)
0.1 5.5 GO:0019722 calcium-mediated signaling(GO:0019722)
0.1 15.8 GO:0071456 cellular response to hypoxia(GO:0071456)
0.1 1.1 GO:0015865 purine nucleotide transport(GO:0015865)
0.1 0.9 GO:0046620 regulation of organ growth(GO:0046620)
0.1 1.6 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.1 0.3 GO:0006435 threonyl-tRNA aminoacylation(GO:0006435)
0.1 0.8 GO:0035967 cellular response to topologically incorrect protein(GO:0035967)
0.1 0.5 GO:0043328 protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043328)
0.1 2.2 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.1 1.1 GO:0033753 ribosomal subunit export from nucleus(GO:0000054) ribosome localization(GO:0033750) establishment of ribosome localization(GO:0033753) rRNA-containing ribonucleoprotein complex export from nucleus(GO:0071428)
0.1 1.0 GO:0006465 signal peptide processing(GO:0006465)
0.1 0.7 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.1 2.5 GO:0006635 fatty acid beta-oxidation(GO:0006635)
0.1 5.6 GO:0009860 pollen tube growth(GO:0009860)
0.1 3.2 GO:0034605 cellular response to heat(GO:0034605)
0.1 3.5 GO:0006338 chromatin remodeling(GO:0006338)
0.1 1.3 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.1 1.2 GO:0047484 regulation of response to osmotic stress(GO:0047484)
0.1 0.1 GO:0006490 oligosaccharide-lipid intermediate biosynthetic process(GO:0006490)
0.1 0.8 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.1 2.2 GO:0018394 internal protein amino acid acetylation(GO:0006475) histone acetylation(GO:0016573) internal peptidyl-lysine acetylation(GO:0018393) peptidyl-lysine acetylation(GO:0018394)
0.1 1.2 GO:0048768 root hair cell tip growth(GO:0048768)
0.0 23.5 GO:0016567 protein ubiquitination(GO:0016567)
0.0 1.2 GO:0034976 response to endoplasmic reticulum stress(GO:0034976)
0.0 1.0 GO:0010582 floral meristem determinacy(GO:0010582)
0.0 0.7 GO:0071472 cellular response to salt stress(GO:0071472)
0.0 1.3 GO:0006367 transcription initiation from RNA polymerase II promoter(GO:0006367)
0.0 2.3 GO:0016579 protein deubiquitination(GO:0016579)
0.0 1.5 GO:0006414 translational elongation(GO:0006414)
0.0 0.6 GO:0050826 response to freezing(GO:0050826)
0.0 0.4 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.0 5.2 GO:0016192 vesicle-mediated transport(GO:0016192)
0.0 3.0 GO:0009753 response to jasmonic acid(GO:0009753)
0.0 0.4 GO:0015780 nucleotide-sugar transport(GO:0015780)
0.0 2.4 GO:0045944 positive regulation of transcription from RNA polymerase II promoter(GO:0045944)
0.0 0.3 GO:0009682 induced systemic resistance(GO:0009682)
0.0 3.2 GO:0006364 rRNA processing(GO:0006364)
0.0 1.5 GO:0000398 mRNA splicing, via spliceosome(GO:0000398)
0.0 1.5 GO:0006511 ubiquitin-dependent protein catabolic process(GO:0006511)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
2.6 20.5 GO:0005784 Sec61 translocon complex(GO:0005784)
2.2 6.7 GO:0034703 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
1.1 4.3 GO:0018444 translation release factor complex(GO:0018444)
1.0 4.2 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.9 2.7 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.8 3.0 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.6 11.8 GO:0031965 nuclear membrane(GO:0031965)
0.6 6.5 GO:0000326 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.6 4.6 GO:0005884 actin filament(GO:0005884)
0.6 3.9 GO:0016471 vacuolar proton-transporting V-type ATPase complex(GO:0016471)
0.5 4.7 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.5 4.6 GO:0010445 nuclear dicing body(GO:0010445)
0.5 1.9 GO:0032045 guanyl-nucleotide exchange factor complex(GO:0032045)
0.4 0.4 GO:1903561 extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561)
0.4 8.5 GO:0090404 growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404)
0.4 2.0 GO:0033180 proton-transporting V-type ATPase, V1 domain(GO:0033180)
0.4 13.6 GO:0030173 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.4 4.1 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.4 2.2 GO:0070552 BRISC complex(GO:0070552)
0.4 1.8 GO:0005782 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.4 2.6 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.4 6.0 GO:0016459 myosin complex(GO:0016459)
0.3 1.0 GO:0030689 Noc complex(GO:0030689)
0.3 2.6 GO:0005834 heterotrimeric G-protein complex(GO:0005834)
0.3 1.3 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.3 1.0 GO:0031080 nuclear pore outer ring(GO:0031080)
0.3 10.9 GO:1903293 protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293)
0.3 0.9 GO:0000015 phosphopyruvate hydratase complex(GO:0000015)
0.3 1.2 GO:0005853 eukaryotic translation elongation factor 1 complex(GO:0005853)
0.3 1.7 GO:0031083 BLOC complex(GO:0031082) BLOC-1 complex(GO:0031083)
0.3 2.1 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.3 4.3 GO:0005769 early endosome(GO:0005769)
0.3 14.2 GO:0015629 actin cytoskeleton(GO:0015629)
0.2 1.7 GO:0031372 ubiquitin conjugating enzyme complex(GO:0031371) UBC13-MMS2 complex(GO:0031372)
0.2 3.8 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.2 2.1 GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275)
0.2 2.1 GO:0017119 Golgi transport complex(GO:0017119)
0.2 15.5 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.2 3.0 GO:0045273 respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281)
0.2 3.6 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.2 2.5 GO:0008023 transcription elongation factor complex(GO:0008023)
0.2 2.1 GO:0035267 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.2 1.3 GO:0030014 CCR4-NOT complex(GO:0030014)
0.2 2.2 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.2 2.6 GO:0031305 integral component of mitochondrial inner membrane(GO:0031305)
0.2 5.8 GO:0009504 cell plate(GO:0009504)
0.2 3.5 GO:0035097 histone methyltransferase complex(GO:0035097)
0.2 2.0 GO:0000815 ESCRT III complex(GO:0000815)
0.2 2.3 GO:0030134 ER to Golgi transport vesicle(GO:0030134)
0.2 3.4 GO:0005689 U12-type spliceosomal complex(GO:0005689)
0.1 1.7 GO:0033179 proton-transporting V-type ATPase, V0 domain(GO:0033179)
0.1 4.7 GO:0000145 exocyst(GO:0000145)
0.1 3.5 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.1 1.0 GO:0005787 signal peptidase complex(GO:0005787)
0.1 4.3 GO:0000932 cytoplasmic mRNA processing body(GO:0000932)
0.1 5.2 GO:0000139 Golgi membrane(GO:0000139)
0.1 1.9 GO:0045275 mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275)
0.1 2.3 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)
0.1 0.7 GO:0017053 transcriptional repressor complex(GO:0017053)
0.1 6.6 GO:0005635 nuclear envelope(GO:0005635)
0.1 25.6 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.1 0.7 GO:0005968 Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.1 5.4 GO:0005797 Golgi medial cisterna(GO:0005797)
0.1 1.0 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.1 8.1 GO:0000138 Golgi trans cisterna(GO:0000138)
0.1 1.6 GO:0009531 secondary cell wall(GO:0009531)
0.1 3.6 GO:0048475 membrane coat(GO:0030117) coated membrane(GO:0048475)
0.1 1.8 GO:0009574 preprophase band(GO:0009574)
0.1 4.3 GO:0005746 mitochondrial respiratory chain(GO:0005746)
0.1 1.0 GO:0005741 mitochondrial outer membrane(GO:0005741)
0.1 0.5 GO:0000813 ESCRT I complex(GO:0000813)
0.1 3.4 GO:0031301 integral component of organelle membrane(GO:0031301)
0.0 5.9 GO:0000325 plant-type vacuole(GO:0000325)
0.0 1.2 GO:1990204 oxidoreductase complex(GO:1990204)
0.0 1.2 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 1.1 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 2.3 GO:0005740 mitochondrial envelope(GO:0005740)
0.0 108.6 GO:0005739 mitochondrion(GO:0005739)
0.0 1.2 GO:0071013 catalytic step 2 spliceosome(GO:0071013)
0.0 2.1 GO:0016604 nuclear body(GO:0016604)
0.0 3.4 GO:0099503 secretory vesicle(GO:0099503)
0.0 5.4 GO:0005777 peroxisome(GO:0005777) microbody(GO:0042579)
0.0 6.4 GO:0005783 endoplasmic reticulum(GO:0005783)
0.0 0.6 GO:0010287 plastoglobule(GO:0010287)
0.0 2.6 GO:0005840 ribosome(GO:0005840)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
5.2 15.6 GO:0004353 glutamate dehydrogenase [NAD(P)+] activity(GO:0004353)
3.8 22.5 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
2.9 8.6 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
2.8 8.5 GO:0016992 lipoate-protein ligase activity(GO:0016979) lipoate synthase activity(GO:0016992)
2.6 10.5 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
2.2 6.7 GO:0015292 uniporter activity(GO:0015292)
2.2 6.6 GO:0035605 peptidyl-cysteine S-nitrosylase activity(GO:0035605)
2.0 12.0 GO:0015181 L-glutamate transmembrane transporter activity(GO:0005313) arginine transmembrane transporter activity(GO:0015181) L-lysine transmembrane transporter activity(GO:0015189)
1.8 5.5 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
1.6 12.7 GO:0008296 3'-5'-exodeoxyribonuclease activity(GO:0008296)
1.6 10.9 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
1.5 9.2 GO:0030544 Hsp70 protein binding(GO:0030544)
1.5 5.9 GO:0070006 metalloaminopeptidase activity(GO:0070006)
1.5 14.5 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
1.4 5.7 GO:0008301 DNA binding, bending(GO:0008301)
1.3 8.1 GO:0052691 UDP-arabinopyranose mutase activity(GO:0052691)
1.2 11.7 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
1.2 4.7 GO:0030742 GTP-dependent protein binding(GO:0030742)
1.0 3.0 GO:0008440 inositol-1,4,5-trisphosphate 6-kinase activity(GO:0000823) inositol tetrakisphosphate 3-kinase activity(GO:0000824) inositol-1,4,5-trisphosphate 3-kinase activity(GO:0008440) inositol tetrakisphosphate 5-kinase activity(GO:0047326) inositol-1,3,4-trisphosphate 6-kinase activity(GO:0052725)
0.9 3.5 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.9 4.3 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.8 5.8 GO:0016004 phospholipase activator activity(GO:0016004) lipase activator activity(GO:0060229)
0.8 5.6 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.8 6.1 GO:0004392 heme oxygenase (decyclizing) activity(GO:0004392)
0.7 2.2 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.7 3.6 GO:0046624 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.7 3.4 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.7 2.6 GO:0016649 electron-transferring-flavoprotein dehydrogenase activity(GO:0004174) oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor(GO:0016649)
0.6 8.2 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.6 1.9 GO:0004601 peroxidase activity(GO:0004601) oxidoreductase activity, acting on peroxide as acceptor(GO:0016684)
0.6 3.7 GO:0005483 soluble NSF attachment protein activity(GO:0005483)
0.6 3.0 GO:0004758 serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454)
0.6 3.0 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.6 2.8 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.6 7.7 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.5 2.7 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.5 10.0 GO:0046961 proton-transporting ATPase activity, rotational mechanism(GO:0046961)
0.5 3.3 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.5 1.8 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
0.5 4.6 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.4 6.3 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.4 5.2 GO:0010385 double-stranded methylated DNA binding(GO:0010385)
0.4 3.0 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.4 8.0 GO:0015248 sterol transporter activity(GO:0015248)
0.4 1.2 GO:0061731 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.4 3.9 GO:0051920 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.4 1.9 GO:0005457 GDP-fucose transmembrane transporter activity(GO:0005457)
0.4 3.0 GO:0010011 auxin binding(GO:0010011)
0.4 2.1 GO:0005092 GDP-dissociation inhibitor activity(GO:0005092)
0.3 0.6 GO:0010436 carotenoid dioxygenase activity(GO:0010436)
0.3 1.6 GO:0038199 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.3 3.5 GO:0032453 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.3 3.5 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.3 0.9 GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity(GO:0004571)
0.3 3.7 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.3 0.9 GO:0004634 phosphopyruvate hydratase activity(GO:0004634)
0.3 3.4 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.3 2.9 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.3 2.1 GO:0017110 nucleoside-diphosphatase activity(GO:0017110)
0.3 6.5 GO:0031386 protein tag(GO:0031386)
0.3 1.6 GO:0031177 phosphopantetheine binding(GO:0031177)
0.3 4.7 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.3 1.0 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.3 0.5 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.3 3.5 GO:0004017 adenylate kinase activity(GO:0004017)
0.2 2.5 GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863)
0.2 6.1 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.2 1.7 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.2 3.0 GO:0004714 transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.2 6.0 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.2 0.7 GO:0004127 cytidylate kinase activity(GO:0004127)
0.2 2.9 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.2 5.1 GO:0097602 cullin family protein binding(GO:0097602)
0.2 1.5 GO:0004550 nucleoside diphosphate kinase activity(GO:0004550)
0.2 3.6 GO:0035064 methylated histone binding(GO:0035064)
0.2 3.9 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.2 19.4 GO:0051015 actin filament binding(GO:0051015)
0.2 11.1 GO:0022884 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)
0.2 4.9 GO:0003756 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.2 1.4 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.2 1.4 GO:0005254 voltage-gated chloride channel activity(GO:0005247) chloride channel activity(GO:0005254)
0.2 7.6 GO:0017137 Rab GTPase binding(GO:0017137)
0.2 4.9 GO:0051787 misfolded protein binding(GO:0051787)
0.2 0.9 GO:0080107 8-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080107)
0.2 2.4 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.2 1.0 GO:0030332 cyclin binding(GO:0030332)
0.2 0.6 GO:0003785 actin monomer binding(GO:0003785)
0.2 7.6 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.1 21.8 GO:0061630 ubiquitin protein ligase activity(GO:0061630)
0.1 1.2 GO:0030976 thiamine pyrophosphate binding(GO:0030976)
0.1 3.1 GO:0008143 poly(A) binding(GO:0008143)
0.1 10.8 GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds(GO:0016799)
0.1 3.3 GO:0051539 4 iron, 4 sulfur cluster binding(GO:0051539)
0.1 0.7 GO:0004663 Rab geranylgeranyltransferase activity(GO:0004663)
0.1 0.8 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.1 1.4 GO:0003950 NAD+ ADP-ribosyltransferase activity(GO:0003950)
0.1 1.6 GO:0019798 procollagen-proline 4-dioxygenase activity(GO:0004656) procollagen-proline dioxygenase activity(GO:0019798) peptidyl-proline 4-dioxygenase activity(GO:0031545)
0.1 1.1 GO:0005471 ATP:ADP antiporter activity(GO:0005471)
0.1 5.9 GO:0019888 protein phosphatase regulator activity(GO:0019888)
0.1 2.1 GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity(GO:0004439) phosphatidylinositol phosphate 5-phosphatase activity(GO:0034595)
0.1 2.2 GO:1901981 phosphatidylinositol phosphate binding(GO:1901981)
0.1 5.8 GO:0042393 histone binding(GO:0042393)
0.1 7.2 GO:0042910 xenobiotic transporter activity(GO:0042910)
0.1 1.6 GO:0016409 palmitoyltransferase activity(GO:0016409)
0.1 3.5 GO:0044389 ubiquitin-like protein ligase binding(GO:0044389)
0.1 4.6 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.1 20.9 GO:0005509 calcium ion binding(GO:0005509)
0.1 3.2 GO:0005085 guanyl-nucleotide exchange factor activity(GO:0005085)
0.1 1.0 GO:0008308 voltage-gated anion channel activity(GO:0008308)
0.1 0.9 GO:0008097 5S rRNA binding(GO:0008097)
0.1 0.3 GO:0004829 threonine-tRNA ligase activity(GO:0004829)
0.1 1.2 GO:0032451 demethylase activity(GO:0032451)
0.1 0.9 GO:0070403 NAD+ binding(GO:0070403)
0.1 1.0 GO:0003746 translation elongation factor activity(GO:0003746)
0.1 1.1 GO:0016775 protein histidine kinase activity(GO:0004673) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775)
0.1 0.6 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.1 1.3 GO:0031072 heat shock protein binding(GO:0031072)
0.0 1.9 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.0 3.4 GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides(GO:0016811)
0.0 2.3 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 1.6 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 3.2 GO:0003724 RNA helicase activity(GO:0003724)
0.0 1.9 GO:0019829 cation-transporting ATPase activity(GO:0019829)
0.0 1.0 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 12.7 GO:0020037 heme binding(GO:0020037)
0.0 2.3 GO:0036459 thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459)
0.0 1.6 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 1.6 GO:0005337 nucleoside transmembrane transporter activity(GO:0005337)
0.0 1.0 GO:0032182 ubiquitin-like protein binding(GO:0032182) ubiquitin binding(GO:0043130)
0.0 1.4 GO:0016298 lipase activity(GO:0016298)
0.0 0.4 GO:0004568 chitinase activity(GO:0004568)
0.0 0.1 GO:0004376 glycolipid mannosyltransferase activity(GO:0004376)
0.0 0.2 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 2.1 GO:0004721 phosphoprotein phosphatase activity(GO:0004721)
0.0 1.2 GO:0004252 serine-type endopeptidase activity(GO:0004252)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 8.7 PID PLK1 PATHWAY PLK1 signaling events
1.3 6.3 PID ECADHERIN NASCENT AJ PATHWAY E-cadherin signaling in the nascent adherens junction
1.2 3.5 SIG CHEMOTAXIS Genes related to chemotaxis
0.8 3.3 PID BETA CATENIN NUC PATHWAY Regulation of nuclear beta catenin signaling and target gene transcription
0.8 0.8 SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES Genes related to regulation of the actin cytoskeleton
0.5 3.6 PID RAC1 PATHWAY RAC1 signaling pathway
0.2 0.4 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 3.5 REACTOME PURINE METABOLISM Genes involved in Purine metabolism
1.1 3.3 REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION Genes involved in Cyclin E associated events during G1/S transition
0.8 2.4 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.6 1.9 REACTOME NRAGE SIGNALS DEATH THROUGH JNK Genes involved in NRAGE signals death through JNK
0.6 3.5 REACTOME SIGNALING BY RHO GTPASES Genes involved in Signaling by Rho GTPases
0.4 1.3 REACTOME INTRINSIC PATHWAY FOR APOPTOSIS Genes involved in Intrinsic Pathway for Apoptosis
0.4 3.5 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.4 0.8 REACTOME SIGNALING BY ROBO RECEPTOR Genes involved in Signaling by Robo receptor
0.4 5.6 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.3 1.1 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
0.3 1.0 REACTOME MITOCHONDRIAL PROTEIN IMPORT Genes involved in Mitochondrial Protein Import
0.2 1.9 REACTOME GLUCOSE METABOLISM Genes involved in Glucose metabolism
0.2 1.2 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation
0.2 1.5 REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION Genes involved in Transcriptional Regulation of White Adipocyte Differentiation
0.1 0.4 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.1 0.7 REACTOME CLASS I MHC MEDIATED ANTIGEN PROCESSING PRESENTATION Genes involved in Class I MHC mediated antigen processing & presentation