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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G60530
Z-value: 3.04
Transcription factors associated with AT3G60530
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G60530
|
AT3G60530 | GATA transcription factor 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GATA4 | arTal_v1_Chr3_+_22373013_22373013 | -0.52 | 4.6e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 22.50 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr2_+_6213972_6213972 Show fit | 12.66 |
AT2G14560.2
AT2G14560.1 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr2_+_6213617_6213676 Show fit | 12.41 |
AT2G14560.3
AT2G14560.4 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr4_+_11269985_11270040 Show fit | 11.96 |
AT4G21120.1
AT4G21120.2 |
amino acid transporter 1 |
|
| arTal_v1_Chr4_-_16344818_16344818 Show fit | 11.69 |
AT4G34131.1
|
UDP-glucosyl transferase 73B3 |
|
| arTal_v1_Chr2_+_18558885_18558938 Show fit | 10.87 |
AT2G44990.2
AT2G44990.3 AT2G44990.1 |
carotenoid cleavage dioxygenase 7 |
|
| arTal_v1_Chr1_-_23690807_23690807 Show fit | 10.82 |
AT1G63840.1
|
RING/U-box superfamily protein |
|
| arTal_v1_Chr1_+_28177670_28177670 Show fit | 10.72 |
AT1G75040.1
|
pathogenesis-related protein 5 |
|
| arTal_v1_Chr3_+_995217_995217 Show fit | 10.01 |
AT3G03870.1
|
transmembrane protein |
|
| arTal_v1_Chr3_+_995062_995062 Show fit | 10.00 |
AT3G03870.2
|
transmembrane protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G60530
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 27.5 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.0 | 23.5 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 2.5 | 22.5 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
| 2.1 | 20.5 | GO:0031204 | posttranslational protein targeting to membrane, translocation(GO:0031204) |
| 0.6 | 16.6 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
| 0.1 | 15.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 1.0 | 15.6 | GO:0006538 | glutamate catabolic process(GO:0006538) |
| 1.3 | 12.7 | GO:0006308 | DNA catabolic process(GO:0006308) |
| 4.0 | 12.0 | GO:0015802 | basic amino acid transport(GO:0015802) |
| 0.2 | 11.7 | GO:0010941 | regulation of cell death(GO:0010941) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 108.6 | GO:0005739 | mitochondrion(GO:0005739) |
| 0.1 | 25.6 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 2.6 | 20.5 | GO:0005784 | Sec61 translocon complex(GO:0005784) |
| 0.2 | 15.5 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.3 | 14.2 | GO:0015629 | actin cytoskeleton(GO:0015629) |
| 0.4 | 13.6 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.6 | 11.8 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.3 | 10.9 | GO:1903293 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
| 0.4 | 8.5 | GO:0090404 | growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404) |
| 0.1 | 8.1 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.8 | 22.5 | GO:0080109 | indole-3-acetonitrile nitrile hydratase activity(GO:0080109) |
| 0.1 | 21.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 20.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.2 | 19.4 | GO:0051015 | actin filament binding(GO:0051015) |
| 5.2 | 15.6 | GO:0004353 | glutamate dehydrogenase [NAD(P)+] activity(GO:0004353) |
| 1.5 | 14.5 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
| 1.6 | 12.7 | GO:0008296 | 3'-5'-exodeoxyribonuclease activity(GO:0008296) |
| 0.0 | 12.7 | GO:0020037 | heme binding(GO:0020037) |
| 2.0 | 12.0 | GO:0015181 | L-glutamate transmembrane transporter activity(GO:0005313) arginine transmembrane transporter activity(GO:0015181) L-lysine transmembrane transporter activity(GO:0015189) |
| 1.2 | 11.7 | GO:0010294 | abscisic acid glucosyltransferase activity(GO:0010294) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 8.7 | PID PLK1 PATHWAY | PLK1 signaling events |
| 1.3 | 6.3 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.5 | 3.6 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 1.2 | 3.5 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.8 | 3.3 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.8 | 0.8 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
| 0.2 | 0.4 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 5.6 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 1.2 | 3.5 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.6 | 3.5 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.4 | 3.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 1.1 | 3.3 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
| 0.8 | 2.4 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.6 | 1.9 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.2 | 1.9 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.2 | 1.5 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.4 | 1.3 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |