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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G56850
Z-value: 2.20
Transcription factors associated with AT3G56850
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G56850
|
AT3G56850 | ABA-responsive element binding protein 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AREB3 | arTal_v1_Chr3_-_21048614_21048614 | 0.87 | 2.2e-09 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 17.32 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 14.64 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 13.63 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 13.56 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr2_+_10906460_10906460 Show fit | 13.13 |
AT2G25625.2
|
histone deacetylase-like protein |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 13.12 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 12.88 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 12.88 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr1_-_11668690_11668690 Show fit | 12.82 |
AT1G32350.1
AT1G32350.2 |
alternative oxidase 1D |
|
| arTal_v1_Chr4_+_285876_285876 Show fit | 12.77 |
AT4G00700.2
AT4G00700.1 |
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G56850
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 53.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 48.5 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.3 | 46.3 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.8 | 39.4 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.8 | 38.4 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 5.6 | 33.9 | GO:0051176 | positive regulation of sulfur metabolic process(GO:0051176) |
| 0.5 | 33.8 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 3.0 | 27.4 | GO:0010230 | alternative respiration(GO:0010230) |
| 6.6 | 26.4 | GO:0042759 | long-chain fatty acid biosynthetic process(GO:0042759) |
| 1.9 | 24.4 | GO:0015996 | chlorophyll catabolic process(GO:0015996) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 338.8 | GO:0005634 | nucleus(GO:0005634) |
| 0.7 | 46.4 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 1.5 | 23.1 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 1.1 | 20.2 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 19.9 | GO:0016021 | integral component of membrane(GO:0016021) |
| 0.8 | 19.5 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 1.0 | 16.5 | GO:0000786 | nucleosome(GO:0000786) |
| 0.9 | 16.3 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.2 | 15.9 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.1 | 15.9 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 79.0 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.3 | 64.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.5 | 60.2 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 58.9 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.3 | 44.1 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.3 | 43.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 29.9 | GO:0005516 | calmodulin binding(GO:0005516) |
| 4.0 | 28.2 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 3.4 | 27.4 | GO:0009916 | alternative oxidase activity(GO:0009916) |
| 0.3 | 24.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 5.5 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.5 | 5.0 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 1.5 | 4.6 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.4 | 2.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.4 | 2.2 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.5 | 1.5 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.1 | 1.1 | PID ATR PATHWAY | ATR signaling pathway |
| 0.3 | 1.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 1.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 6.6 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.6 | 6.6 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.8 | 5.6 | REACTOME BASE EXCISION REPAIR | Genes involved in Base Excision Repair |
| 1.4 | 4.3 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.7 | 3.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 1.2 | 3.7 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.9 | 2.8 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.9 | 2.7 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.4 | 2.6 | REACTOME TRANSCRIPTION COUPLED NER TC NER | Genes involved in Transcription-coupled NER (TC-NER) |
| 0.8 | 2.5 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |