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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G55370
Z-value: 0.61
Transcription factors associated with AT3G55370
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G55370
|
AT3G55370 | OBF-binding protein 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| OBP3 | arTal_v1_Chr3_+_20527063_20527063 | 0.07 | 7.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 1.40 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 1.23 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 1.21 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 1.14 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 1.11 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 0.97 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 0.97 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr5_+_625254_625254 Show fit | 0.96 |
AT5G02760.1
|
Protein phosphatase 2C family protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 0.95 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 0.94 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G55370
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 5.5 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.3 | 4.8 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.1 | 3.6 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 3.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 2.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 2.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 2.6 | GO:0019762 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.0 | 2.6 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.0 | 2.2 | GO:0045454 | cell redox homeostasis(GO:0045454) |
| 0.1 | 1.8 | GO:0045168 | cell-cell signaling involved in cell fate commitment(GO:0045168) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 26.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 15.3 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 10.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 5.6 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 5.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 4.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 3.2 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 2.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.3 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 1.9 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 6.0 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 4.1 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.0 | 3.4 | GO:0008134 | transcription factor binding(GO:0008134) |
| 0.0 | 3.0 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 2.8 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 2.5 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.0 | 2.5 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.0 | 2.5 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 2.3 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 2.2 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.7 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.1 | 0.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.0 | 0.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.2 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.0 | 0.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.2 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.0 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.0 | 0.2 | PID ATR PATHWAY | ATR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 4.9 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.4 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.1 | 0.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.3 | REACTOME EGFR DOWNREGULATION | Genes involved in EGFR downregulation |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.2 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.1 | 0.2 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.0 | 0.2 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.0 | 0.2 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.0 | 0.2 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |