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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G53200
Z-value: 2.11
Transcription factors associated with AT3G53200
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G53200
|
AT3G53200 | myb domain protein 27 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB27 | arTal_v1_Chr3_-_19719507_19719507 | 0.32 | 9.4e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_1464467_1464467 Show fit | 9.57 |
AT4G03320.1
|
translocon at the inner envelope membrane of chloroplasts 20-IV |
|
| arTal_v1_Chr1_-_20385380_20385380 Show fit | 9.52 |
AT1G54570.1
|
Esterase/lipase/thioesterase family protein |
|
| arTal_v1_Chr3_-_2699257_2699257 Show fit | 9.01 |
AT3G08860.2
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 8.86 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr1_-_460696_460831 Show fit | 8.83 |
AT1G02310.1
AT1G02310.2 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr3_-_2699420_2699420 Show fit | 8.79 |
AT3G08860.1
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr1_-_19698482_19698482 Show fit | 8.62 |
AT1G52890.1
|
NAC domain containing protein 19 |
|
| arTal_v1_Chr1_+_27538190_27538190 Show fit | 8.35 |
AT1G73220.1
|
organic cation/carnitine transporter1 |
|
| arTal_v1_Chr5_-_6042938_6043014 Show fit | 8.34 |
AT5G18270.2
AT5G18270.1 |
NAC domain containing protein 87 |
|
| arTal_v1_Chr4_+_10974456_10974510 Show fit | 8.32 |
AT4G20320.2
AT4G20320.4 AT4G20320.3 AT4G20320.1 AT4G20320.5 AT4G20320.6 |
CTP synthase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G53200
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 28.8 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 26.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.5 | 23.0 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 3.2 | 19.2 | GO:0009413 | response to flooding(GO:0009413) |
| 1.2 | 19.2 | GO:0006538 | glutamate catabolic process(GO:0006538) |
| 1.0 | 12.4 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 0.2 | 12.1 | GO:0042538 | hyperosmotic salinity response(GO:0042538) |
| 0.3 | 11.2 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
| 1.2 | 11.0 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
| 1.8 | 10.8 | GO:1900367 | positive regulation of defense response to insect(GO:1900367) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 126.4 | GO:0005634 | nucleus(GO:0005634) |
| 0.0 | 18.1 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.9 | 16.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 15.6 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 12.8 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 11.2 | GO:0005615 | extracellular space(GO:0005615) |
| 0.4 | 10.6 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
| 0.3 | 10.6 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 8.8 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.1 | 8.4 | GO:0000139 | Golgi membrane(GO:0000139) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 40.6 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.1 | 37.8 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 24.4 | GO:0000975 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.3 | 18.5 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 1.6 | 17.8 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.3 | 15.9 | GO:0017137 | Rab GTPase binding(GO:0017137) |
| 1.5 | 15.4 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
| 0.1 | 12.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 12.1 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 1.0 | 11.3 | GO:0003691 | double-stranded telomeric DNA binding(GO:0003691) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 5.5 | PID AURORA A PATHWAY | Aurora A signaling |
| 1.1 | 4.5 | PID PLK1 PATHWAY | PLK1 signaling events |
| 1.0 | 4.0 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
| 1.2 | 3.6 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.3 | 2.4 | PID CDC42 PATHWAY | CDC42 signaling events |
| 0.1 | 0.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.3 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.1 | 0.3 | PID BARD1 PATHWAY | BARD1 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 4.7 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.7 | 4.0 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 1.2 | 3.6 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.4 | 3.4 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.5 | 3.2 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.4 | 2.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.2 | 2.3 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.2 | 2.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 1.7 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
| 0.2 | 1.3 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |