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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G52440
Z-value: 1.07
Transcription factors associated with AT3G52440
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G52440
|
AT3G52440 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G52440 | arTal_v1_Chr3_+_19435447_19435447 | 0.36 | 6.3e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 5.20 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 4.22 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 4.09 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 4.01 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 3.95 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 3.53 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr1_-_4394343_4394454 Show fit | 3.49 |
AT1G12900.3
AT1G12900.4 AT1G12900.1 AT1G12900.2 AT1G12900.5 |
glyceraldehyde 3-phosphate dehydrogenase A subunit 2 |
|
| arTal_v1_Chr1_+_10375754_10375754 Show fit | 3.48 |
AT1G29670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_+_10375599_10375599 Show fit | 3.43 |
AT1G29670.2
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 3.35 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G52440
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 22.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 13.0 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.4 | 9.0 | GO:0006833 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.3 | 7.3 | GO:0043572 | chloroplast fission(GO:0010020) plastid fission(GO:0043572) |
| 0.2 | 7.1 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.5 | 5.4 | GO:0019685 | photosynthesis, dark reaction(GO:0019685) |
| 0.2 | 5.4 | GO:0045168 | cell-cell signaling involved in cell fate commitment(GO:0045168) |
| 0.9 | 5.3 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
| 0.1 | 5.2 | GO:0042335 | cuticle development(GO:0042335) |
| 0.5 | 5.1 | GO:0046084 | adenine metabolic process(GO:0046083) adenine biosynthetic process(GO:0046084) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 49.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 46.3 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 40.8 | GO:0055035 | plastid thylakoid membrane(GO:0055035) |
| 0.1 | 23.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 12.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 10.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 10.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 6.0 | GO:0005615 | extracellular space(GO:0005615) |
| 0.1 | 5.5 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.2 | 4.6 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 14.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.5 | 13.7 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.1 | 11.1 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.2 | 8.9 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
| 0.1 | 8.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.4 | 8.3 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.2 | 6.2 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.1 | 6.0 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.8 | 5.3 | GO:0004356 | glutamate-ammonia ligase activity(GO:0004356) |
| 0.0 | 5.3 | GO:0009055 | electron carrier activity(GO:0009055) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.0 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.2 | 1.2 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.2 | 1.0 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.9 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.2 | 0.7 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.1 | 0.7 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.2 | 0.6 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.0 | 0.2 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.8 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.4 | 1.7 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 1.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 1.0 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 1.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.7 | REACTOME SPRY REGULATION OF FGF SIGNALING | Genes involved in Spry regulation of FGF signaling |
| 0.1 | 0.7 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 0.7 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.1 | 0.7 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |