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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G50410
Z-value: 1.11
Transcription factors associated with AT3G50410
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G50410
|
AT3G50410 | OBF binding protein 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| OBP1 | arTal_v1_Chr3_+_18709613_18709613 | 0.58 | 1.1e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 5.59 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 5.15 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 5.08 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 4.95 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 4.77 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 4.36 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr5_+_3358787_3358787 Show fit | 4.34 |
AT5G10625.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 4.25 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 4.24 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr1_-_20385380_20385380 Show fit | 4.19 |
AT1G54570.1
|
Esterase/lipase/thioesterase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G50410
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 42.5 | GO:0036294 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.3 | 30.3 | GO:0010260 | organ senescence(GO:0010260) |
| 0.1 | 28.3 | GO:0070647 | protein modification by small protein conjugation or removal(GO:0070647) |
| 0.1 | 22.3 | GO:0010498 | proteasomal protein catabolic process(GO:0010498) |
| 0.4 | 17.8 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.2 | 15.8 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.4 | 15.1 | GO:0072666 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.2 | 15.0 | GO:0009738 | abscisic acid-activated signaling pathway(GO:0009738) |
| 0.3 | 13.7 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.1 | 13.7 | GO:0042594 | response to starvation(GO:0042594) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 52.6 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.2 | 24.0 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 15.8 | GO:0000785 | chromatin(GO:0000785) |
| 0.0 | 15.5 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 12.0 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.5 | 11.7 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.1 | 10.8 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 10.0 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.1 | 9.7 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.2 | 8.9 | GO:0016592 | mediator complex(GO:0016592) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 35.6 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.2 | 34.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 24.8 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 23.8 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 16.6 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.3 | 16.4 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.3 | 16.1 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.2 | 14.8 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.1 | 14.6 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.2 | 14.3 | GO:0005096 | GTPase activator activity(GO:0005096) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 5.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 3.7 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.6 | 3.2 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.3 | 1.8 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.3 | 1.7 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.5 | 1.6 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.2 | 1.6 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.4 | 1.1 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.4 | 1.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.2 | 1.1 | PID PLK1 PATHWAY | PLK1 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 7.4 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.5 | 4.5 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.8 | 4.1 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.6 | 2.4 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.5 | 2.1 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.2 | 2.1 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.3 | 1.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.5 | 1.8 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.6 | 1.7 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.5 | 1.4 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |