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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G50060
Z-value: 1.13
Transcription factors associated with AT3G50060
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G50060
|
AT3G50060 | myb domain protein 77 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB77 | arTal_v1_Chr3_-_18559326_18559326 | 0.29 | 1.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 4.00 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 3.76 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 3.45 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr1_-_10475969_10475969 Show fit | 3.45 |
AT1G29920.1
|
chlorophyll A/B-binding protein 2 |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 3.44 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 3.43 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr1_-_10473502_10473502 Show fit | 3.34 |
AT1G29910.1
|
chlorophyll A/B binding protein 3 |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 3.26 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 3.25 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr3_+_17228642_17228642 Show fit | 3.22 |
AT3G46780.1
|
plastid transcriptionally active 16 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G50060
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 30.1 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 27.1 | GO:0006412 | translation(GO:0006412) |
| 1.2 | 22.4 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 1.2 | 18.4 | GO:0015976 | carbon utilization(GO:0015976) |
| 1.0 | 18.4 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.3 | 17.4 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.7 | 14.1 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.4 | 9.9 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.2 | 9.9 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.5 | 9.6 | GO:0009767 | photosynthetic electron transport chain(GO:0009767) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 149.6 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.2 | 81.1 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.3 | 67.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 65.2 | GO:0005576 | extracellular region(GO:0005576) |
| 1.0 | 40.6 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 39.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.8 | 22.5 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 21.5 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.9 | 21.4 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.1 | 17.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 29.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 1.2 | 28.1 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.3 | 19.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.6 | 19.4 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 17.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.0 | 16.0 | GO:0005524 | ATP binding(GO:0005524) |
| 1.1 | 15.9 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.7 | 15.2 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.5 | 12.5 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.6 | 11.8 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 12.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.6 | 3.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.5 | 3.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.4 | 2.6 | PID ATM PATHWAY | ATM pathway |
| 0.5 | 2.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.4 | 2.1 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.6 | 1.9 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.6 | 1.7 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.2 | 1.6 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.2 | 1.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.0 | 18.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 6.8 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.6 | 3.2 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.4 | 2.0 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.6 | 1.9 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
| 0.4 | 1.8 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.3 | 1.7 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.5 | 1.6 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.2 | 1.6 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.2 | 1.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |