ISMARA results: AT3G47640

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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G47640

Z-value: 0.42

Transcription factors associated with AT3G47640

Gene Symbol	Gene ID	Gene Info
AT3G47640 TAIR	AT3G47640	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
PYE	arTal_v1_Chr3_+_17567126_17567126	0.80	3.8e-07	Click!

Activity profile of AT3G47640 motif

Sorted Z-values of AT3G47640 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr5_-_763322_763322 Show fit	1.85	AT5G03210.1	DIP2 TAIR Show fit	E3 ubiquitin-protein ligase
arTal_v1_Chr5_-_763480_763480 Show fit	1.55	AT5G03210.2	DIP2 TAIR Show fit	E3 ubiquitin-protein ligase
arTal_v1_Chr3_-_17475274_17475274 Show fit	1.36	AT3G47420.3 AT3G47420.1 AT3G47420.2	G3Pp1 TAIR Show fit	putative glycerol-3-phosphate transporter 1
arTal_v1_Chr4_-_12062757_12062858 Show fit	1.20	AT4G23010.2 AT4G23010.1 AT4G23010.3	UTR2 TAIR Show fit	UDP-galactose transporter 2
arTal_v1_Chr5_+_769438_769438 Show fit	0.83	AT5G03230.1	AT5G03230 TAIR Show fit	senescence regulator (Protein of unknown function, DUF584)
arTal_v1_Chr4_+_17400610_17400724 Show fit	0.78	AT4G36920.2 AT4G36920.1	AP2 TAIR Show fit	Integrase-type DNA-binding superfamily protein
arTal_v1_Chr5_-_18360978_18360978 Show fit	0.69	AT5G45310.2	AT5G45310 TAIR Show fit	coiled-coil protein
arTal_v1_Chr1_-_27276317_27276317 Show fit	0.69	AT1G72450.2	JAZ6 TAIR Show fit	jasmonate-zim-domain protein 6
arTal_v1_Chr1_-_27276562_27276562 Show fit	0.68	AT1G72450.1	JAZ6 TAIR Show fit	jasmonate-zim-domain protein 6
arTal_v1_Chr1_-_738234_738306 Show fit	0.66	AT1G03080.2 AT1G03080.1	NET1D TAIR Show fit	kinase interacting (KIP1-like) family protein

Showing 1 to 10 of 39 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G47640

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	3.4	GO:0051607	defense response to virus(GO:0051607)
0.1	1.4	GO:0072506	phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.0	1.4	GO:2000022	regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.2	1.2	GO:0072334	UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.0	0.8	GO:0010093	specification of floral organ identity(GO:0010093)
0.0	0.8	GO:0008284	positive regulation of cell proliferation(GO:0008284)
0.0	0.5	GO:0051170	nuclear import(GO:0051170)
0.0	0.4	GO:0006655	phosphatidylglycerol biosynthetic process(GO:0006655)
0.0	0.4	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.1	0.3	GO:0006517	protein deglycosylation(GO:0006517)

Showing 1 to 10 of 15 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.2	GO:0030173	integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0	0.5	GO:0000124	SAGA complex(GO:0000124)

Showing 1 to 2 of 2 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.3	GO:0051015	actin filament binding(GO:0051015)
0.2	1.2	GO:0005459	UDP-galactose transmembrane transporter activity(GO:0005459)
0.0	0.7	GO:0004707	MAP kinase activity(GO:0004707)
0.1	0.6	GO:0016723	ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.0	0.5	GO:0003713	transcription coactivator activity(GO:0003713)
0.0	0.5	GO:0000156	phosphorelay response regulator activity(GO:0000156)
0.1	0.4	GO:0004605	phosphatidate cytidylyltransferase activity(GO:0004605)
0.1	0.3	GO:0004298	threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.1	0.3	GO:0015924	mannosyl-oligosaccharide mannosidase activity(GO:0015924)
0.0	0.3	GO:0016885	CoA carboxylase activity(GO:0016421) ligase activity, forming carbon-carbon bonds(GO:0016885)

Showing 1 to 10 of 10 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	PID MTOR 4PATHWAY	mTOR signaling pathway
0.0	0.2	NABA ECM GLYCOPROTEINS	Genes encoding structural ECM glycoproteins

Showing 1 to 2 of 2 entries

Results for AT3G47640

Z-value: 0.42

Transcription factors associated with AT3G47640

Activity-expression correlation:

Activity profile of AT3G47640 motif

Sorted Z-values of AT3G47640 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G47640

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category: