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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G47640

Z-value: 0.42

Transcription factors associated with AT3G47640

Gene Symbol Gene ID Gene Info
AT3G47640
AT3G47640 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
PYEarTal_v1_Chr3_+_17567126_175671260.803.8e-07Click!

Activity profile of AT3G47640 motif

Sorted Z-values of AT3G47640 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_-_763322 1.85 AT5G03210.1
DIP2
E3 ubiquitin-protein ligase
Chr5_-_763480 1.55 AT5G03210.2
DIP2
E3 ubiquitin-protein ligase
Chr3_-_17475274 1.36 AT3G47420.3
AT3G47420.1
AT3G47420.2
G3Pp1
putative glycerol-3-phosphate transporter 1
Chr4_-_12062757 1.20 AT4G23010.2
AT4G23010.1
AT4G23010.3
UTR2
UDP-galactose transporter 2
Chr5_+_769438 0.83 AT5G03230.1
AT5G03230
senescence regulator (Protein of unknown function, DUF584)
Chr4_+_17400610 0.78 AT4G36920.2
AT4G36920.1
AP2
Integrase-type DNA-binding superfamily protein
Chr5_-_18360978 0.69 AT5G45310.2
AT5G45310
coiled-coil protein
Chr1_-_27276317 0.69 AT1G72450.2
JAZ6
jasmonate-zim-domain protein 6
Chr1_-_27276562 0.68 AT1G72450.1
JAZ6
jasmonate-zim-domain protein 6
Chr1_-_738234 0.66 AT1G03080.2
AT1G03080.1
NET1D
kinase interacting (KIP1-like) family protein
Chr5_-_18361213 0.65 AT5G45310.1
AT5G45310
coiled-coil protein
Chr3_-_20552215 0.63 AT3G55430.1
AT3G55430
O-Glycosyl hydrolases family 17 protein
Chr1_-_738056 0.61 AT1G03080.3
NET1D
kinase interacting (KIP1-like) family protein
Chr1_-_8153530 0.56 AT1G23020.2
AT1G23020.7
AT1G23020.6
AT1G23020.5
AT1G23020.4
AT1G23020.3
AT1G23020.1
FRO3
ferric reduction oxidase 3
Chr2_+_6385804 0.55 AT2G14850.1
AT2G14850
transcriptional regulator of RNA polII, SAGA, subunit
Chr5_-_8358546 0.48 AT5G24470.1
PRR5
two-component response regulator-like protein
Chr5_-_18403784 0.48 AT5G45410.3
AT5G45410.2
AT5G45410.5
AT5G45410.1
AT5G45410.4
AT5G45410
zinc finger B-box protein
Chr5_+_4843855 0.44 AT5G14960.1
DEL2
DP-E2F-like 2
Chr1_+_21042951 0.40 AT1G56220.4
AT1G56220.5
AT1G56220.3
AT1G56220
Dormancy/auxin associated family protein
Chr1_+_21043348 0.40 AT1G56220.2
AT1G56220.1
AT1G56220
Dormancy/auxin associated family protein
Chr3_-_17565496 0.37 AT3G47630.1
AT3G47630.4
AT3G47630.5
AT3G47630.3
AT3G47630.2
AT3G47630.6
AT3G47630
translocator assembly/maintenance protein
Chr5_+_18407150 0.37 AT5G45430.2
AT5G45430
Protein kinase superfamily protein
Chr3_+_5121303 0.36 AT3G15210.1
ERF4
ethylene responsive element binding factor 4
Chr5_+_18407388 0.35 AT5G45430.1
AT5G45430
Protein kinase superfamily protein
Chr4_+_252766 0.33 AT4G00590.2
AT4G00590.1
AT4G00590
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Chr3_-_387051 0.31 AT3G02140.1
TMAC2
AFP2 (ABI five-binding protein 2) family protein
Chr5_+_4844686 0.31 AT5G14960.2
DEL2
DP-E2F-like 2
Chr1_+_739544 0.31 AT1G03090.2
AT1G03090.1
MCCA
methylcrotonyl-CoA carboxylase alpha chain
Chr5_-_4842067 0.29 AT5G14950.1
GMII
golgi alpha-mannosidase II
Chr2_-_19281772 0.24 AT2G46920.4
AT2G46920.3
AT2G46920.2
AT2G46920.1
POL
Protein phosphatase 2C family protein
Chr2_-_14260739 0.23 AT2G33710.2
AT2G33710
Integrase-type DNA-binding superfamily protein
Chr3_-_7624114 0.22 AT3G21650.2
AT3G21650.1
AT3G21650
Protein phosphatase 2A regulatory B subunit family protein
Chr2_-_14260904 0.20 AT2G33710.1
AT2G33710
Integrase-type DNA-binding superfamily protein
Chr3_-_7621477 0.18 AT3G21640.1
TWD1
FKBP-type peptidyl-prolyl cis-trans isomerase family protein
Chr3_+_17778282 0.14 AT3G48140.1
AT3G48140
B12D protein
Chr1_-_970058 0.13 AT1G03840.2
MGP
C2H2 and C2HC zinc fingers superfamily protein
Chr1_-_970334 0.11 AT1G03840.1
MGP
C2H2 and C2HC zinc fingers superfamily protein
Chr1_-_8653915 0.06 AT1G24400.1
LHT2
lysine histidine transporter 2
Chr1_+_25752624 0.02 AT1G68580.3
AT1G68580.4
AT1G68580.2
AT1G68580.5
AT1G68580.1
AT1G68580
Agenet and bromo-adjacent homology (BAH) domain-containing protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G47640

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.2 GO:0072334 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.1 1.4 GO:0072506 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.1 0.3 GO:0006517 protein deglycosylation(GO:0006517)
0.1 0.3 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.1 3.4 GO:0051607 defense response to virus(GO:0051607)
0.0 0.8 GO:0010093 specification of floral organ identity(GO:0010093)
0.0 0.3 GO:0006552 leucine catabolic process(GO:0006552)
0.0 0.4 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655)
0.0 0.2 GO:1900458 negative regulation of brassinosteroid mediated signaling pathway(GO:1900458)
0.0 1.4 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.0 0.4 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.0 0.2 GO:0009939 positive regulation of gibberellic acid mediated signaling pathway(GO:0009939)
0.0 0.8 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.0 0.5 GO:0051170 nuclear import(GO:0051170)
0.0 0.2 GO:0009934 regulation of meristem structural organization(GO:0009934)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 GO:0000124 SAGA complex(GO:0000124)
0.0 1.2 GO:0030173 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.2 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.1 0.3 GO:0004298 threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.1 0.3 GO:0015924 mannosyl-oligosaccharide mannosidase activity(GO:0015924)
0.1 0.4 GO:0004605 phosphatidate cytidylyltransferase activity(GO:0004605)
0.1 0.6 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.0 0.3 GO:0016885 CoA carboxylase activity(GO:0016421) ligase activity, forming carbon-carbon bonds(GO:0016885)
0.0 0.7 GO:0004707 MAP kinase activity(GO:0004707)
0.0 1.3 GO:0051015 actin filament binding(GO:0051015)
0.0 0.5 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 0.5 GO:0000156 phosphorelay response regulator activity(GO:0000156)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 PID MTOR 4PATHWAY mTOR signaling pathway
0.0 0.2 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins