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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G46590

Z-value: 2.35

Transcription factors associated with AT3G46590

Gene Symbol Gene ID Gene Info
AT3G46590
AT3G46590 TRF-like 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TRFL1arTal_v1_Chr3_+_17153747_171537470.384.8e-02Click!

Activity profile of AT3G46590 motif

Sorted Z-values of AT3G46590 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_12461907 7.26 AT4G24000.1
CSLG2
cellulose synthase like G2
Chr1_+_12917070 6.22 AT1G35230.1
AGP5
arabinogalactan protein 5
Chr4_+_12463312 5.89 AT4G24000.2
CSLG2
cellulose synthase like G2
Chr2_-_19315241 5.11 AT2G47000.7
AT2G47000.1
AT2G47000.2
AT2G47000.4
AT2G47000.3
ABCB4
ATP binding cassette subfamily B4
Chr2_+_1025 4.47 AT2G01008.1
AT2G01008
maternal effect embryo arrest protein
Chr2_-_19315013 4.33 AT2G47000.5
AT2G47000.6
ABCB4
ATP binding cassette subfamily B4
Chr5_+_8749680 3.98 AT5G25250.1
FLOT1
SPFH/Band 7/PHB domain-containing membrane-associated protein family
Chr3_-_14196865 3.79 AT3G41762.1
AT3G41762
hypothetical protein
Chr3_+_16297979 3.60 AT3G44750.2
HDA3
histone deacetylase 3
Chr3_+_16297656 3.48 AT3G44750.1
HDA3
histone deacetylase 3
Chr4_+_7304323 3.41 AT4G12290.2
AT4G12290
Copper amine oxidase family protein
Chr2_-_9767 3.40 AT2G01023.1
AT2G01023
hypothetical protein
Chr4_+_7303985 3.40 AT4G12290.1
AT4G12290
Copper amine oxidase family protein
Chr3_-_6403392 3.39 AT3G18600.1
AT3G18600
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_19723350 3.32 AT3G53230.1
AtCDC48B
ATPase, AAA-type, CDC48 protein
Chr3_+_14914008 3.26 AT3G42806.1
AT3G42806

Chr5_-_8186662 3.22 AT5G24160.2
AT5G24160.1
SQE6
squalene monooxygenase 6
Chr1_-_8855874 3.14 AT1G25260.1
AT1G25260
Ribosomal protein L10 family protein
Chr5_-_8186100 2.97 AT5G24160.3
SQE6
squalene monooxygenase 6
Chr2_-_14078744 2.95 AT2G33210.2
AT2G33210.1
HSP60-2
heat shock protein 60-2
Chr4_-_13106864 2.76 AT4G25730.1
AT4G25730
FtsJ-like methyltransferase family protein
Chr3_-_9918810 2.71 AT3G26910.2
AT3G26910.1
AT3G26910.3
AT3G26910
hydroxyproline-rich glycoprotein family protein
Chr4_-_17902160 2.70 AT4G38150.2
AT4G38150.3
AT4G38150.1
AT4G38150
Pentatricopeptide repeat (PPR) superfamily protein
Chr2_+_18374162 2.67 AT2G44500.1
AT2G44500.2
AT2G44500
O-fucosyltransferase family protein
Chr3_+_8668772 2.59 AT3G23990.1
HSP60
heat shock protein 60
Chr3_+_10076809 2.57 AT3G27280.1
AT3G27280.2
PHB4
prohibitin 4
Chr4_-_14086882 2.55 AT4G28510.1
PHB1
prohibitin 1
Chr1_-_6483646 2.51 AT1G18800.1
NRP2
NAP1-related protein 2
Chr3_-_3325046 2.42 AT3G10640.2
AT3G10640.1
VPS60.1
SNF7 family protein
Chr3_-_21092141 2.41 AT3G56990.3
AT3G56990.2
AT3G56990.1
EDA7
embryo sac development arrest 7
Chr1_-_28020049 2.39 AT1G74560.3
AT1G74560.1
NRP1
NAP1-related protein 1
Chr1_-_6506542 2.35 AT1G18850.1
AT1G18850
hypothetical protein
Chr4_+_17553310 2.34 AT4G37295.1
AT4G37295
hypothetical protein
Chr1_+_5317973 2.32 AT1G15480.1
AT1G15480
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_4565335 2.30 AT3G13860.1
HSP60-3A
heat shock protein 60-3A
Chr5_+_2928173 2.27 AT5G09420.1
TOC64-V
translocon at the outer membrane of chloroplasts 64-V
Chr2_-_13965531 2.26 AT2G32920.1
PDIL2-3
PDI-like 2-3
Chr1_-_2977002 2.25 AT1G09210.1
CRT1b
calreticulin 1b
Chr1_-_22400312 2.23 AT1G60850.3
AT1G60850.2
AT1G60850.4
AT1G60850.1
ATRPAC42
DNA-directed RNA polymerase family protein
Chr3_+_7887276 2.22 AT3G22310.1
AT3G22310.2
PMH1
putative mitochondrial RNA helicase 1
Chr4_-_18437258 2.21 AT4G39740.1
HCC2
Thioredoxin superfamily protein
Chr5_+_2975436 2.18 AT5G09590.1
MTHSC70-2
mitochondrial HSO70 2
Chr4_-_13486858 2.15 AT4G26780.1
AR192
Co-chaperone GrpE family protein
Chr3_-_4229752 2.10 AT3G13150.1
AT3G13150
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_+_9475350 2.09 AT3G25890.2
AT3G25890.1
CRF11
Integrase-type DNA-binding superfamily protein
Chr1_-_883599 2.09 AT1G03530.1
NAF1
nuclear assembly factor 1
Chr2_-_9866562 2.09 AT2G23170.1
GH3.3
Auxin-responsive GH3 family protein
Chr1_-_9246652 2.04 AT1G26740.1
AT1G26740
Ribosomal L32p protein family
Chr1_+_8195776 2.03 AT1G23100.1
AT1G23100
GroES-like family protein
Chr3_+_20578922 2.02 AT3G55510.1
AT3G55510.2
RBL
Noc2p family
Chr3_+_1539527 1.98 AT3G05380.4
AT3G05380.2
AT3G05380.3
AT3G05380.1
AT3G05380.5
ALY2
ALWAYS EARLY 2
Chr3_+_1021146 1.96 AT3G03950.2
AT3G03950.3
ECT1
evolutionarily conserved C-terminal region 1
Chr1_+_8962087 1.92 AT1G25520.1
AT1G25520
Uncharacterized protein family (UPF0016)
Chr5_+_1428597 1.91 AT5G04895.1
ABO6
DEA(D/H)-box RNA helicase family protein
Chr5_-_4415622 1.86 AT5G13680.1
ABO1
IKI3 family protein
Chr3_+_23412024 1.86 AT3G63400.4
AT3G63400.1
AT3G63400.3
AT3G63400.2
AT3G63400
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr4_+_7453196 1.84 AT4G12600.1
AT4G12600.2
AT4G12600
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Chr3_+_1021405 1.83 AT3G03950.1
ECT1
evolutionarily conserved C-terminal region 1
Chr4_-_12587384 1.82 AT4G24270.3
AT4G24270.1
AT4G24270.4
AT4G24270.2
EMB140
EMBRYO DEFECTIVE 140
Chr1_-_29680757 1.82 AT1G78930.1
AT1G78930
Mitochondrial transcription termination factor family protein
Chr3_-_4663363 1.80 AT3G14070.1
CAX9
cation exchanger 9
Chr3_-_4018631 1.77 AT3G12650.1
AT3G12650
transmembrane protein
Chr2_+_8293640 1.77 AT2G19130.1
AT2G19130
S-locus lectin protein kinase family protein
Chr5_-_10295283 1.76 AT5G28300.1
AT5G28300
Duplicated homeodomain-like superfamily protein
Chr3_+_5179358 1.76 AT3G15352.3
AT3G15352.2
AT3G15352.1
AT3G15352.4
COX17
cytochrome c oxidase 17
Chr5_-_16317291 1.76 AT5G40770.1
PHB3
prohibitin 3
Chr5_-_3036596 1.73 AT5G09770.1
AT5G09770
Ribosomal protein L17 family protein
Chr5_+_22394550 1.70 AT5G55200.1
MGE1
Co-chaperone GrpE family protein
Chr4_+_7214577 1.65 AT4G12040.1
AT4G12040.2
SAP7
A20/AN1-like zinc finger family protein
Chr1_-_27026363 1.65 AT1G71850.1
AT1G71850
Ubiquitin carboxyl-terminal hydrolase family protein
Chr5_-_20676702 1.63 AT5G50810.1
TIM8
translocase inner membrane subunit 8
Chr1_-_25095526 1.62 AT1G67120.2
AT1G67120.1
AT1G67120
midasin-like protein
Chr1_-_12104660 1.62 AT1G33390.2
AT1G33390.1
FAS4
RNA helicase family protein
Chr5_+_22714471 1.61 AT5G56090.1
COX15
cytochrome c oxidase 15
Chr3_-_8608297 1.60 AT3G23830.2
AT3G23830.1
GRP4
glycine-rich RNA-binding protein 4
Chr1_-_28223785 1.53 AT1G75200.1
AT1G75200
flavodoxin family protein / radical SAM domain-containing protein
Chr1_-_1718909 1.52 AT1G05720.1
AT1G05720
selenoprotein family protein
Chr5_-_25841023 1.51 AT5G64650.1
AT5G64650
Ribosomal protein L17 family protein
Chr3_-_11299695 1.48 AT3G29400.1
EXO70E1
exocyst subunit exo70 family protein E1
Chr3_-_18290672 1.47 AT3G49320.1
AT3G49320.2
AT3G49320
Metal-dependent protein hydrolase
Chr1_+_22915699 1.47 AT1G62010.1
AT1G62010
Mitochondrial transcription termination factor family protein
Chr1_+_3862399 1.47 AT1G11475.1
NRPB10
RNA polymerases N / 8 kDa subunit
Chr5_-_7633380 1.43 AT5G22840.1
AT5G22840
Protein kinase superfamily protein
Chr2_-_9508895 1.43 AT2G22400.1
AT2G22400
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_-_18219559 1.42 AT2G44020.1
AT2G44020
Mitochondrial transcription termination factor family protein
Chr3_+_5175948 1.41 AT3G15351.1
AT3G15351.4
AT3G15351.5
AT3G15351.2
AT3G15351.3
AT3G15351.6
AT3G15351.7
AT3G15351
P53/DNA damage-regulated protein
Chr1_-_9528878 1.38 AT1G27435.1
AT1G27435
hypothetical protein
Chr4_-_2745635 1.38 AT4G05410.1
YAO
Transducin/WD40 repeat-like superfamily protein
Chr1_+_3631 1.37 AT1G01010.1
NAC001
NAC domain containing protein 1
Chr5_+_11380102 1.31 AT5G30495.1
AT5G30495
Fcf2 pre-rRNA processing protein
Chr1_-_7004432 1.31 AT1G20200.1
EMB2719
PAM domain (PCI/PINT associated module) protein
Chr2_-_9179166 1.30 AT2G21440.1
AT2G21440
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr4_+_7287803 1.29 AT4G12240.1
AT4G12240
zinc finger (C2H2 type) family protein
Chr3_+_812396 1.28 AT3G03420.1
AT3G03420.2
AT3G03420
Ku70-binding family protein
Chr3_+_5050195 1.28 AT3G15000.1
RIP1
cobalt ion binding protein
Chr5_+_11379907 1.28 AT5G30495.2
AT5G30495
Fcf2 pre-rRNA processing protein
Chr2_-_8501294 1.27 AT2G19670.1
PRMT1A
protein arginine methyltransferase 1A
Chr4_-_15727977 1.27 AT4G32605.1
AT4G32605
Mitochondrial glycoprotein family protein
Chr3_+_6740695 1.25 AT3G19440.2
AT3G19440.1
AT3G19440
Pseudouridine synthase family protein
Chr4_+_13142088 1.25 AT4G25845.1
AT4G25850.2
AT4G25845
ORP4B
oxysterol-binding 4B-like protein
OSBP(oxysterol binding protein)-related protein 4B
Chr1_+_22343585 1.22 AT1G60670.2
AT1G60670.4
AT1G60670.3
AT1G60670.5
AT1G60670.1
AT1G60670
hypothetical protein (DUF3755)
Chr4_-_10689671 1.21 AT4G19640.2
AT4G19640.3
AT4G19640.1
ARA7
Ras-related small GTP-binding family protein
Chr3_-_6815403 1.20 AT3G19615.1
AT3G19615
beta-1,4-xylosidase
Chr4_-_1075893 1.19 AT4G02450.2
AT4G02450.1
AT4G02450
HSP20-like chaperones superfamily protein
Chr5_+_25912969 1.16 AT5G64816.3
AT5G64816.4
AT5G64816.1
AT5G64816.2
AT5G64816
thionin-like protein
Chr4_+_13557974 1.15 AT4G27010.1
AT4G27010.2
EMB2788
ribosome 60S biogenesis amino-terminal protein
Chr4_+_18498202 1.12 AT4G39860.1
AT4G39860.3
AT4G39860
hematological/neurological-like protein
Chr5_-_9635174 1.10 AT5G27330.1
AT5G27330
Prefoldin chaperone subunit family protein
Chr5_+_22873666 1.08 AT5G56500.2
AT5G56500.1
Cpn60beta3
TCP-1/cpn60 chaperonin family protein
Chr1_+_5457084 1.08 AT1G15870.1
AT1G15870
Mitochondrial glycoprotein family protein
Chr3_-_4274436 1.07 AT3G13235.3
AT3G13235.1
AT3G13235.2
DDI1
ubiquitin family protein
Chr5_+_23967217 1.07 AT5G59430.2
AT5G59430.4
AT5G59430.3
TRP1
telomeric repeat binding protein 1
Chr5_+_15851389 1.06 AT5G39590.1
AT5G39590
TLD-domain containing nucleolar protein
Chr1_+_19963267 1.06 AT1G53490.1
HEI10
RING/U-box superfamily protein
Chr5_-_20823299 1.06 AT5G51220.3
AT5G51220.2
AT5G51220.1
AT5G51220
ubiquinol-cytochrome C chaperone family protein
Chr5_-_21263151 1.06 AT5G52380.1
AT5G52380
VASCULAR-RELATED NAC-DOMAIN 6
Chr1_-_4577967 1.04 AT1G13360.2
AT1G13360.3
AT1G13360
hypothetical protein
Chr1_-_4578369 1.03 AT1G13360.1
AT1G13360
hypothetical protein
Chr1_+_11783543 0.99 AT1G32580.1
AT1G32580
plastid developmental protein DAG
Chr3_-_13634029 0.99 AT3G33072.1
AT3G33072

Chr5_+_23967875 0.99 AT5G59430.5
TRP1
telomeric repeat binding protein 1
Chr1_+_1383841 0.98 AT1G04900.1
AT1G04900
NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185)
Chr5_+_23967611 0.98 AT5G59430.1
TRP1
telomeric repeat binding protein 1
Chr1_+_22911159 0.97 AT1G61990.1
AT1G61990.2
AT1G61990
Mitochondrial transcription termination factor family protein
Chr2_-_12165929 0.96 AT2G28450.1
AT2G28450.2
AT2G28450
zinc finger (CCCH-type) family protein
Chr3_+_16115498 0.96 AT3G44530.2
AT3G44530.3
AT3G44530.4
AT3G44530.1
HIRA
histone chaperone HIRA-like protein
Chr2_-_15864128 0.95 AT2G37890.1
AT2G37890
Mitochondrial substrate carrier family protein
Chr1_-_10645935 0.94 AT1G30240.1
AT1G30240
proline-, glutamic acid/leucine-rich protein
Chr3_+_15405984 0.93 AT3G43520.1
AT3G43520
Transmembrane proteins 14C
Chr5_-_4994 0.93 AT5G01010.2
AT5G01010.5
AT5G01010.3
AT5G01010.4
AT5G01010.1
AT5G01010
retinal-binding protein
Chr1_-_10646195 0.91 AT1G30240.2
AT1G30240
proline-, glutamic acid/leucine-rich protein
Chr4_-_2517217 0.90 AT4G04940.1
AT4G04940
transducin family protein / WD-40 repeat family protein
Chr5_-_18886960 0.86 AT5G46550.1
AT5G46550
DNA-binding bromodomain-containing protein
Chr2_+_14668440 0.85 AT2G34780.2
AT2G34780.1
MEE22
maternal effect embryo arrest 22
Chr5_-_7394280 0.84 AT5G22330.1
RIN1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_30073524 0.83 AT1G79950.6
AT1G79950.5
AT1G79950.4
AT1G79950.2
AT1G79950.1
AT1G79950.3
AT1G79950.7
AT1G79950
RAD3-like DNA-binding helicase protein
Chr2_-_14880655 0.80 AT2G35345.1
AT2G35345
hypothetical protein
Chr3_+_9180244 0.77 AT3G25210.1
AT3G25210
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_9171118 0.76 AT1G26550.1
AT1G26550
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Chr4_+_897547 0.75 AT4G02040.1
AT4G02040
hypothetical protein
Chr4_-_2516703 0.75 AT4G04940.2
AT4G04940
transducin family protein / WD-40 repeat family protein
Chr4_+_7975064 0.75 AT4G13750.1
NOV
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Chr5_+_21505074 0.74 AT5G53030.1
AT5G53030.2
AT5G53030
hypothetical protein
Chr3_-_17340543 0.72 AT3G47080.1
AT3G47080
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_9854517 0.70 AT1G28210.3
AT1G28210.1
AT1G28210.2
ATJ1
DNAJ heat shock family protein
Chr2_+_3618058 0.69 AT2G08986.1
AT2G08986
hypothetical protein
Chr1_+_7065494 0.64 AT1G20390.1
AT1G20390

Chr2_+_18149197 0.64 AT2G43810.2
AT2G43810.3
AT2G43810.1
LSM6B
Small nuclear ribonucleoprotein family protein
Chr5_-_18954692 0.63 AT5G46710.1
AT5G46710.2
AT5G46710.3
AT5G46710
PLATZ transcription factor family protein
Chr4_-_6252293 0.62 AT4G09980.2
AT4G09980.1
EMB1691
Methyltransferase MT-A70 family protein
Chr1_-_22093060 0.61 AT1G59990.2
EMB3108
DEA(D/H)-box RNA helicase family protein
Chr1_-_27927962 0.60 AT1G74260.1
PUR4
purine biosynthesis 4
Chr1_-_22093385 0.59 AT1G59990.1
EMB3108
DEA(D/H)-box RNA helicase family protein
Chr5_+_25400317 0.57 AT5G63420.1
emb2746
RNA-metabolising metallo-beta-lactamase family protein
Chr3_+_11073646 0.56 AT3G29090.1
PME31
pectin methylesterase 31
Chr4_+_16431916 0.56 AT4G34360.1
AT4G34360
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_+_19978101 0.54 AT1G53530.1
AT1G53530.2
AT1G53530
Peptidase S24/S26A/S26B/S26C family protein
Chr3_+_16271511 0.54 AT3G44720.1
ADT4
arogenate dehydratase 4
Chr2_+_14669164 0.52 AT2G34780.4
MEE22
maternal effect embryo arrest 22
Chr3_+_16138375 0.51 AT3G44550.2
FAR5
fatty acid reductase 5
Chr2_+_14669007 0.49 AT2G34780.3
MEE22
maternal effect embryo arrest 22
Chr3_-_9652936 0.46 AT3G26340.1
AT3G26340
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Chr4_-_6756595 0.45 AT4G11060.1
MTSSB
mitochondrially targeted single-stranded DNA binding protein
Chr5_+_2681996 0.44 AT5G08335.1
ATSTE14B
Isoprenylcysteine carboxyl methyltransferase (ICMT) family
Chr3_+_18759348 0.44 AT3G50550.1
AT3G50550.2
AT3G50550
hypothetical protein
Chr2_+_17765178 0.43 AT2G42650.1
AT2G42650
Ribosomal protein L1p/L10e family
Chr3_+_4995941 0.43 AT3G14850.1
TBL41
TRICHOME BIREFRINGENCE-LIKE 41
Chr1_+_28085753 0.41 AT1G74750.3
AT1G74750.2
AT1G74750
Pentatricopeptide repeat (PPR) superfamily protein
Chr5_+_8301105 0.40 AT5G24350.1
AT5G24350.3
AT5G24350.2
AT5G24350
neuroblastoma-amplified sequence protein
Chr1_+_3948714 0.40 AT1G11710.1
AT1G11710.2
AT1G11710
Pentatricopeptide repeat (PPR) superfamily protein
Chr5_+_2682533 0.40 AT5G08335.2
ATSTE14B
Isoprenylcysteine carboxyl methyltransferase (ICMT) family
Chr2_+_13361502 0.39 AT2G31340.1
emb1381
embryo defective 1381
Chr3_+_4995426 0.37 AT3G14850.2
TBL41
TRICHOME BIREFRINGENCE-LIKE 41
Chr3_+_16137576 0.35 AT3G44550.1
FAR5
fatty acid reductase 5
Chr2_+_13873362 0.35 AT2G32710.2
AT2G32710.1
AT2G32710
Cyclin-dependent kinase inhibitor family protein
Chr1_+_4615767 0.35 AT1G13460.1
AT1G13460.2
AT1G13460
Protein phosphatase 2A regulatory B subunit family protein
Chr1_+_19965146 0.34 AT1G53490.2
HEI10
RING/U-box superfamily protein
Chr4_+_13354992 0.33 AT4G26430.1
CSN6B
COP9 signalosome subunit 6B
Chr1_+_29173409 0.31 AT1G77630.1
LYM3
Peptidoglycan-binding LysM domain-containing protein
Chr5_+_6112738 0.28 AT5G18440.2
AT5G18440.1
NUFIP
GATA zinc finger protein
Chr4_-_10870382 0.28 AT4G20090.2
EMB1025
Pentatricopeptide repeat (PPR) superfamily protein
Chr1_-_29879204 0.27 AT1G79430.1
AT1G79430.2
APL
Homeodomain-like superfamily protein
Chr2_-_12928009 0.26 AT2G30320.1
AT2G30320
Pseudouridine synthase family protein
Chr3_-_5015342 0.23 AT3G14900.1
EMB3120
hypothetical protein
Chr5_+_17469490 0.22 AT5G43500.2
AT5G43500.3
AT5G43500.1
AT5G43500.4
ARP9
actin-related protein 9
Chr4_-_7243228 0.21 AT4G12090.1
AT4G12090
Cornichon family protein
Chr1_-_966704 0.21 AT1G03830.1
AT1G03830.2
AT1G03830
guanylate-binding family protein
Chr4_-_13690478 0.21 AT4G27340.2
AT4G27340.3
AT4G27340.1
AT4G27340
Met-10+ like family protein
Chr5_-_26970668 0.19 AT5G67640.1
AT5G67640
hypothetical protein
Chr5_-_2578310 0.18 AT5G08040.1
TOM5
mitochondrial import receptor subunit TOM5-like protein
Chr3_-_9935499 0.18 AT3G26935.1
AT3G26935
DHHC-type zinc finger family protein
Chr4_-_10870651 0.17 AT4G20090.1
EMB1025
Pentatricopeptide repeat (PPR) superfamily protein
Chr1_+_28086800 0.15 AT1G74750.4
AT1G74750
Pentatricopeptide repeat (PPR) superfamily protein
Chr1_+_23227532 0.14 AT1G62720.1
NG1
Pentatricopeptide repeat (PPR-like) superfamily protein
Chr4_+_13489806 0.10 AT4G26800.2
AT4G26800.1
AT4G26800
Pentatricopeptide repeat (PPR) superfamily protein
Chr1_-_30280359 0.10 AT1G80530.1
AT1G80530
Major facilitator superfamily protein
Chr1_-_23267221 0.08 AT1G62830.1
LDL1
LSD1-like 1
Chr2_-_549510 0.05 AT2G02148.3
AT2G02148.2
AT2G02148.1
AT2G02148.5
AT2G02148.4
AT2G02148
PPR containing protein
Chr5_+_15895682 0.04 AT5G39710.1
EMB2745
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_6310058 0.04 AT5G18920.1
AT5G18920.2
AT5G18920
Cox19-like CHCH family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G46590

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.9 9.4 GO:0060919 auxin influx(GO:0060919)
1.1 3.3 GO:0030970 retrograde protein transport, ER to cytosol(GO:0030970) endoplasmic reticulum to cytosol transport(GO:1903513)
1.0 4.0 GO:0010324 membrane invagination(GO:0010324)
0.8 3.2 GO:0000491 small nucleolar ribonucleoprotein complex assembly(GO:0000491)
0.6 1.9 GO:0080178 5-carbamoylmethyl uridine residue modification(GO:0080178)
0.6 4.9 GO:0016444 somatic cell DNA recombination(GO:0016444)
0.5 1.8 GO:0043157 response to cation stress(GO:0043157)
0.4 13.2 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.4 11.8 GO:0042026 protein refolding(GO:0042026)
0.4 4.5 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.4 1.5 GO:0009304 tRNA transcription(GO:0009304)
0.4 1.1 GO:0097033 respiratory chain complex III assembly(GO:0017062) mitochondrial respiratory chain complex III assembly(GO:0034551) mitochondrial respiratory chain complex III biogenesis(GO:0097033)
0.3 2.2 GO:0019079 viral genome replication(GO:0019079)
0.3 1.3 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.3 2.2 GO:0097034 respiratory chain complex IV assembly(GO:0008535) mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034)
0.3 7.1 GO:0009292 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.3 1.8 GO:0071731 response to nitric oxide(GO:0071731)
0.2 5.9 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.2 0.8 GO:0006481 C-terminal protein methylation(GO:0006481)
0.2 3.8 GO:0061157 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.2 1.0 GO:0006336 DNA replication-independent nucleosome assembly(GO:0006336)
0.2 1.9 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.2 6.2 GO:0016126 sterol biosynthetic process(GO:0016126)
0.2 1.8 GO:0006825 copper ion transport(GO:0006825)
0.1 6.5 GO:0030490 maturation of SSU-rRNA(GO:0030490)
0.1 1.1 GO:0070131 regulation of mitochondrial translation(GO:0070129) positive regulation of mitochondrial translation(GO:0070131)
0.1 2.4 GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway(GO:0032511)
0.1 3.0 GO:0046219 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.1 0.6 GO:0080009 mRNA methylation(GO:0080009)
0.1 1.3 GO:0016554 cytidine to uridine editing(GO:0016554)
0.1 0.3 GO:0050996 positive regulation of fatty acid beta-oxidation(GO:0032000) positive regulation of lipid catabolic process(GO:0050996)
0.1 1.4 GO:0060321 acceptance of pollen(GO:0060321)
0.1 2.2 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.1 2.0 GO:0051085 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.1 1.4 GO:0051026 chiasma assembly(GO:0051026)
0.1 0.5 GO:0051095 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.1 0.6 GO:0009942 longitudinal axis specification(GO:0009942)
0.1 2.1 GO:0010252 auxin homeostasis(GO:0010252)
0.1 0.9 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.1 2.0 GO:0010582 floral meristem determinacy(GO:0010582)
0.1 1.6 GO:0006783 heme biosynthetic process(GO:0006783)
0.1 1.4 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.1 1.9 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.1 0.3 GO:0010387 COP9 signalosome assembly(GO:0010387)
0.1 0.3 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.0 0.5 GO:1902223 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 2.3 GO:0034976 response to endoplasmic reticulum stress(GO:0034976)
0.0 1.8 GO:0048544 recognition of pollen(GO:0048544)
0.0 0.6 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.0 0.3 GO:0010088 phloem development(GO:0010088)
0.0 0.8 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.0 1.2 GO:0007033 vacuole organization(GO:0007033)
0.0 1.5 GO:0006887 exocytosis(GO:0006887)
0.0 0.4 GO:0000470 maturation of LSU-rRNA(GO:0000470)
0.0 2.4 GO:0006364 rRNA processing(GO:0006364)
0.0 0.5 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0 1.0 GO:0042176 regulation of protein catabolic process(GO:0042176)
0.0 2.0 GO:0051726 regulation of cell cycle(GO:0051726)
0.0 0.8 GO:0006400 tRNA modification(GO:0006400)
0.0 0.6 GO:0055046 microgametogenesis(GO:0055046)
0.0 0.2 GO:0018230 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 1.7 GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process(GO:0043161)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.0 GO:0030689 Noc complex(GO:0030689)
0.6 3.8 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.6 3.3 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.5 1.4 GO:0005712 chiasma(GO:0005712)
0.3 2.0 GO:0017053 transcriptional repressor complex(GO:0017053)
0.3 1.0 GO:0030874 nucleolar chromatin(GO:0030874)
0.3 1.7 GO:0034388 Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.3 1.9 GO:0033588 Elongator holoenzyme complex(GO:0033588)
0.2 3.4 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.2 1.8 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.2 2.7 GO:0005732 small nucleolar ribonucleoprotein complex(GO:0005732)
0.2 0.8 GO:0000812 Swr1 complex(GO:0000812)
0.2 3.7 GO:0005736 DNA-directed RNA polymerase I complex(GO:0005736)
0.2 3.0 GO:0031965 nuclear membrane(GO:0031965)
0.1 3.8 GO:0032040 small-subunit processome(GO:0032040)
0.1 1.2 GO:0030139 endocytic vesicle(GO:0030139)
0.1 4.0 GO:0098590 plasma membrane region(GO:0098590)
0.1 6.9 GO:0005747 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.1 11.7 GO:0005759 mitochondrial matrix(GO:0005759)
0.1 1.5 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.1 1.3 GO:0008541 proteasome regulatory particle, lid subcomplex(GO:0008541)
0.1 0.4 GO:0030686 90S preribosome(GO:0030686)
0.1 1.1 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 13.2 GO:0005802 trans-Golgi network(GO:0005802)
0.0 1.5 GO:0000145 exocyst(GO:0000145)
0.0 1.8 GO:0030659 cytoplasmic vesicle membrane(GO:0030659)
0.0 0.5 GO:0019774 proteasome core complex, beta-subunit complex(GO:0019774)
0.0 15.4 GO:0016021 integral component of membrane(GO:0016021)
0.0 13.2 GO:0005730 nucleolus(GO:0005730)
0.0 3.2 GO:0015934 large ribosomal subunit(GO:0015934)
0.0 0.3 GO:0008180 COP9 signalosome(GO:0008180)
0.0 0.2 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.0 1.6 GO:0005743 mitochondrial inner membrane(GO:0005743)
0.0 0.2 GO:0033202 Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202) INO80-type complex(GO:0097346)
0.0 2.2 GO:0033648 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.0 0.6 GO:0034708 methyltransferase complex(GO:0034708)
0.0 0.3 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 2.2 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.0 37.1 GO:0005739 mitochondrion(GO:0005739)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 9.4 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.8 6.2 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.8 3.0 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.7 2.2 GO:0001056 RNA polymerase I activity(GO:0001054) RNA polymerase III activity(GO:0001056)
0.4 13.2 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.3 1.6 GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor(GO:0016653)
0.3 3.8 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.3 2.1 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.3 1.8 GO:0016531 copper chaperone activity(GO:0016531)
0.3 1.4 GO:0034511 U3 snoRNA binding(GO:0034511)
0.2 0.8 GO:0003880 protein C-terminal carboxyl O-methyltransferase activity(GO:0003880) protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity(GO:0004671)
0.2 7.1 GO:0033558 histone deacetylase activity(GO:0004407) protein deacetylase activity(GO:0033558)
0.2 2.3 GO:0016273 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.1 0.9 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.1 4.4 GO:0031593 polyubiquitin binding(GO:0031593)
0.1 1.1 GO:0097177 translation activator activity(GO:0008494) mitochondrial ribosome binding(GO:0097177)
0.1 1.9 GO:0016018 cyclosporin A binding(GO:0016018)
0.1 2.2 GO:0051787 misfolded protein binding(GO:0051787)
0.1 8.4 GO:0003724 RNA helicase activity(GO:0003724)
0.1 1.8 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.1 2.3 GO:0016864 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.1 0.5 GO:0047769 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.1 1.5 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.1 2.0 GO:0051087 chaperone binding(GO:0051087)
0.1 1.9 GO:0000049 tRNA binding(GO:0000049)
0.0 1.0 GO:0003714 transcription corepressor activity(GO:0003714)
0.0 2.9 GO:0051082 unfolded protein binding(GO:0051082)
0.0 1.5 GO:0010181 FMN binding(GO:0010181)
0.0 0.6 GO:0008409 5'-3' exonuclease activity(GO:0008409)
0.0 0.6 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.0 1.4 GO:0004707 MAP kinase activity(GO:0004707)
0.0 2.5 GO:0042393 histone binding(GO:0042393)
0.0 1.5 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 5.5 GO:0005507 copper ion binding(GO:0005507)
0.0 1.3 GO:0050897 cobalt ion binding(GO:0050897)
0.0 5.3 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.8 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 0.8 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 0.3 GO:0070122 isopeptidase activity(GO:0070122)
0.0 9.8 GO:0044822 mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822)
0.0 0.2 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 4.6 GO:0003723 RNA binding(GO:0003723)
0.0 1.2 GO:0032561 GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 4.9 PID VEGF VEGFR PATHWAY VEGF and VEGFR signaling network
0.8 0.8 PID RAS PATHWAY Regulation of Ras family activation
0.6 4.0 SIG BCR SIGNALING PATHWAY Members of the BCR signaling pathway
0.1 0.8 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 4.9 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
0.9 9.4 REACTOME PPARA ACTIVATES GENE EXPRESSION Genes involved in PPARA Activates Gene Expression
0.4 1.8 REACTOME MITOCHONDRIAL PROTEIN IMPORT Genes involved in Mitochondrial Protein Import