Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT3G46590
Z-value: 2.35
Transcription factors associated with AT3G46590
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G46590
|
AT3G46590 | TRF-like 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TRFL1 | arTal_v1_Chr3_+_17153747_17153747 | 0.38 | 4.8e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_12461907_12461907 Show fit | 7.26 |
AT4G24000.1
|
cellulose synthase like G2 |
|
| arTal_v1_Chr1_+_12917070_12917070 Show fit | 6.22 |
AT1G35230.1
|
arabinogalactan protein 5 |
|
| arTal_v1_Chr4_+_12463312_12463312 Show fit | 5.89 |
AT4G24000.2
|
cellulose synthase like G2 |
|
| arTal_v1_Chr2_-_19315241_19315343 Show fit | 5.11 |
AT2G47000.7
AT2G47000.1 AT2G47000.2 AT2G47000.4 AT2G47000.3 |
ATP binding cassette subfamily B4 |
|
| arTal_v1_Chr2_+_1025_1025 Show fit | 4.47 |
AT2G01008.1
|
maternal effect embryo arrest protein |
|
| arTal_v1_Chr2_-_19315013_19315071 Show fit | 4.33 |
AT2G47000.5
AT2G47000.6 |
ATP binding cassette subfamily B4 |
|
| arTal_v1_Chr5_+_8749680_8749680 Show fit | 3.98 |
AT5G25250.1
|
SPFH/Band 7/PHB domain-containing membrane-associated protein family |
|
| arTal_v1_Chr3_-_14196865_14196865 Show fit | 3.79 |
AT3G41762.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_16297979_16297979 Show fit | 3.60 |
AT3G44750.2
|
histone deacetylase 3 |
|
| arTal_v1_Chr3_+_16297656_16297656 Show fit | 3.48 |
AT3G44750.1
|
histone deacetylase 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G46590
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 13.2 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.4 | 11.8 | GO:0042026 | protein refolding(GO:0042026) |
| 1.9 | 9.4 | GO:0060919 | auxin influx(GO:0060919) |
| 0.3 | 7.1 | GO:0009292 | genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294) |
| 0.1 | 6.5 | GO:0030490 | maturation of SSU-rRNA(GO:0030490) |
| 0.2 | 6.2 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.2 | 5.9 | GO:0030150 | protein import into mitochondrial matrix(GO:0030150) |
| 0.6 | 4.9 | GO:0016444 | somatic cell DNA recombination(GO:0016444) |
| 0.4 | 4.5 | GO:0000463 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463) |
| 1.0 | 4.0 | GO:0010324 | membrane invagination(GO:0010324) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 37.1 | GO:0005739 | mitochondrion(GO:0005739) |
| 0.0 | 15.4 | GO:0016021 | integral component of membrane(GO:0016021) |
| 0.0 | 13.2 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 13.2 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 11.7 | GO:0005759 | mitochondrial matrix(GO:0005759) |
| 0.1 | 6.9 | GO:0005747 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
| 0.1 | 4.0 | GO:0098590 | plasma membrane region(GO:0098590) |
| 0.6 | 3.8 | GO:0001405 | presequence translocase-associated import motor(GO:0001405) |
| 0.1 | 3.8 | GO:0032040 | small-subunit processome(GO:0032040) |
| 0.2 | 3.7 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 13.2 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.0 | 9.8 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 1.2 | 9.4 | GO:0010328 | auxin influx transmembrane transporter activity(GO:0010328) |
| 0.1 | 8.4 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.2 | 7.1 | GO:0033558 | histone deacetylase activity(GO:0004407) protein deacetylase activity(GO:0033558) |
| 0.8 | 6.2 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.0 | 5.5 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.0 | 5.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 4.6 | GO:0003723 | RNA binding(GO:0003723) |
| 0.1 | 4.4 | GO:0031593 | polyubiquitin binding(GO:0031593) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 4.9 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.6 | 4.0 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
| 0.8 | 0.8 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 9.4 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 1.2 | 4.9 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.4 | 1.8 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |