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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G45610
Z-value: 0.82
Transcription factors associated with AT3G45610
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G45610
|
AT3G45610 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DOF6 | arTal_v1_Chr3_-_16740546_16740546 | 0.66 | 1.4e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 3.52 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 3.35 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 2.85 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 2.81 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 2.81 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 2.79 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 2.79 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 2.78 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 2.74 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 2.62 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G45610
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 19.9 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.2 | 18.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.9 | 14.3 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.6 | 11.1 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 10.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.5 | 9.0 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 8.1 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.2 | 7.0 | GO:0042335 | cuticle development(GO:0042335) |
| 0.1 | 6.9 | GO:0045454 | cell redox homeostasis(GO:0045454) |
| 0.8 | 6.2 | GO:0043489 | RNA stabilization(GO:0043489) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 88.6 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 77.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 51.0 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.2 | 31.7 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 20.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.5 | 19.9 | GO:0010319 | stromule(GO:0010319) |
| 0.4 | 14.7 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.6 | 11.0 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 10.1 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 7.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 18.8 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.3 | 16.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 14.1 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 12.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.2 | 11.7 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.4 | 11.0 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.4 | 9.9 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.4 | 9.7 | GO:0080161 | auxin transmembrane transporter activity(GO:0080161) |
| 0.1 | 9.2 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.4 | 9.1 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 10.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.5 | 3.0 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.4 | 2.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 1.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 1.4 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.4 | 1.3 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.3 | 1.0 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.2 | 1.0 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 1.0 | PID ATR PATHWAY | ATR signaling pathway |
| 0.3 | 0.9 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.7 | 16.1 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 2.9 | REACTOME INFLUENZA LIFE CYCLE | Genes involved in Influenza Life Cycle |
| 0.4 | 2.0 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.6 | 1.9 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.4 | 1.9 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.4 | 1.8 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.3 | 1.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.3 | 1.2 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 1.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 1.2 | REACTOME CLASS A1 RHODOPSIN LIKE RECEPTORS | Genes involved in Class A/1 (Rhodopsin-like receptors) |