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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G42860
Z-value: 2.49
Transcription factors associated with AT3G42860
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G42860
|
AT3G42860 | zinc knuckle (CCHC-type) family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G42860 | arTal_v1_Chr3_-_14948228_14948228 | 0.38 | 4.3e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_18077517_18077517 Show fit | 10.56 |
AT2G43570.1
|
chitinase |
|
| arTal_v1_Chr5_-_3402389_3402389 Show fit | 9.22 |
AT5G10760.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr5_+_24608605_24608605 Show fit | 8.73 |
AT5G61160.1
|
anthocyanin 5-aromatic acyltransferase 1 |
|
| arTal_v1_Chr1_-_12398418_12398418 Show fit | 8.16 |
AT1G34060.1
|
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
|
| arTal_v1_Chr5_+_18390942_18390942 Show fit | 8.02 |
AT5G45380.1
|
urea-proton symporter DEGRADATION OF UREA 3 (DUR3) |
|
| arTal_v1_Chr4_+_285876_285876 Show fit | 7.97 |
AT4G00700.2
AT4G00700.1 |
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
|
| arTal_v1_Chr2_+_18066960_18066960 Show fit | 7.66 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
|
| arTal_v1_Chr1_-_3756998_3756998 Show fit | 7.61 |
AT1G11210.1
|
cotton fiber protein, putative (DUF761) |
|
| arTal_v1_Chr1_-_12397986_12397986 Show fit | 7.49 |
AT1G34060.2
|
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
|
| arTal_v1_Chr4_+_10875233_10875252 Show fit | 6.99 |
AT4G20110.2
AT4G20110.1 |
VACUOLAR SORTING RECEPTOR 7 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G42860
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 24.5 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.3 | 17.1 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.0 | 13.9 | GO:0006468 | protein phosphorylation(GO:0006468) |
| 1.3 | 13.2 | GO:1902290 | positive regulation of defense response to oomycetes(GO:1902290) |
| 1.7 | 12.1 | GO:0006597 | spermine biosynthetic process(GO:0006597) |
| 2.9 | 11.7 | GO:0010272 | response to silver ion(GO:0010272) |
| 0.4 | 11.0 | GO:0006896 | Golgi to vacuole transport(GO:0006896) |
| 0.5 | 10.9 | GO:0010072 | primary shoot apical meristem specification(GO:0010072) |
| 0.2 | 10.7 | GO:0048544 | recognition of pollen(GO:0048544) |
| 0.0 | 10.5 | GO:0016567 | protein ubiquitination(GO:0016567) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 117.1 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 20.0 | GO:0099503 | secretory vesicle(GO:0099503) |
| 1.2 | 11.0 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.2 | 10.7 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
| 0.1 | 9.9 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 8.8 | GO:0005768 | endosome(GO:0005768) |
| 0.0 | 8.7 | GO:0005773 | vacuole(GO:0005773) |
| 0.1 | 7.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.6 | 6.9 | GO:0070062 | extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561) |
| 0.2 | 5.7 | GO:1903293 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 19.6 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 19.2 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.1 | 18.2 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 17.4 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 14.8 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 14.0 | GO:0016301 | kinase activity(GO:0016301) |
| 2.5 | 12.3 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.2 | 11.4 | GO:0019901 | protein kinase binding(GO:0019901) |
| 0.2 | 10.8 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
| 0.5 | 10.6 | GO:0043295 | glutathione binding(GO:0043295) oligopeptide binding(GO:1900750) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.9 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.5 | 1.0 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.1 | 1.0 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.5 | PID ATM PATHWAY | ATM pathway |
| 0.1 | 0.2 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 4.7 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.9 | 3.8 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.4 | 2.5 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.6 | 2.2 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.1 | 1.7 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.2 | 1.4 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 1.0 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.2 | 1.0 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.2 | 1.0 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.2 | 0.9 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |