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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G28920

Z-value: 2.55

Transcription factors associated with AT3G28920

Gene Symbol Gene ID Gene Info
AT3G28920
AT3G28920 homeobox protein 34

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
HB34arTal_v1_Chr3_-_10941833_10941833-0.802.9e-07Click!

Activity profile of AT3G28920 motif

Sorted Z-values of AT3G28920 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_4312103 15.84 AT2G10940.2
AT2G10940.1
AT2G10940
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_3157501 11.68 AT1G09750.1
AT1G09750
Eukaryotic aspartyl protease family protein
Chr3_-_197974 11.51 AT3G01500.1
CA1
carbonic anhydrase 1
Chr3_-_198160 11.42 AT3G01500.2
CA1
carbonic anhydrase 1
Chr3_-_198664 11.36 AT3G01500.3
CA1
carbonic anhydrase 1
Chr3_-_197564 11.20 AT3G01500.4
CA1
carbonic anhydrase 1
Chr1_-_4090857 10.40 AT1G12090.1
ELP
extensin-like protein
Chr4_-_7493080 10.00 AT4G12730.1
FLA2
FASCICLIN-like arabinogalactan 2
Chr2_-_17648945 9.89 AT2G42380.1
AT2G42380.4
AT2G42380.3
AT2G42380.2
AT2G42380.5
BZIP34
Basic-leucine zipper (bZIP) transcription factor family protein
Chr1_+_10375754 9.58 AT1G29670.1
AT1G29670
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_+_10375599 9.47 AT1G29670.2
AT1G29670
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_+_2763449 9.36 AT2G06850.1
AT2G06850.2
XTH4
xyloglucan endotransglucosylase/hydrolase 4
Chr3_-_5508414 9.35 AT3G16250.1
PnsB3
NDH-dependent cyclic electron flow 1
Chr2_+_16130290 9.28 AT2G38540.1
LP1
lipid transfer protein 1
Chr1_+_10371675 9.23 AT1G29660.1
AT1G29660
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_+_17760865 9.21 AT5G44130.1
FLA13
FASCICLIN-like arabinogalactan protein 13 precursor
Chr3_-_3357754 9.02 AT3G10720.2
AT3G10720
Plant invertase/pectin methylesterase inhibitor superfamily
Chr4_-_10391298 9.00 AT4G18970.1
AT4G18970
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_-_10390991 8.92 AT4G18970.2
AT4G18970
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_+_28053030 8.79 AT1G74670.1
GASA6
Gibberellin-regulated family protein
Chr4_-_12400231 8.74 AT4G23820.1
AT4G23820
Pectin lyase-like superfamily protein
Chr5_-_6976036 8.52 AT5G20630.1
GER3
germin 3
Chr5_-_22560461 8.40 AT5G55730.2
AT5G55730.1
FLA1
FASCICLIN-like arabinogalactan 1
Chr3_+_18046144 8.20 AT3G48720.1
DCF
HXXXD-type acyl-transferase family protein
Chr4_+_14215473 7.97 AT4G28780.1
AT4G28780
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_-_16448844 7.95 AT3G44990.1
XTH31
xyloglucan endo-transglycosylase-related 8
Chr2_+_16476198 7.93 AT2G39470.1
AT2G39470.2
AT2G39470.3
PnsL1
PsbP-like protein 2
Chr2_-_9428170 7.84 AT2G22170.1
PLAT2
Lipase/lipooxygenase, PLAT/LH2 family protein
Chr5_+_22038165 7.80 AT5G54270.1
LHCB3
light-harvesting chlorophyll B-binding protein 3
Chr3_+_23345754 7.75 AT3G63200.1
PLP9
PATATIN-like protein 9
Chr3_-_3356811 7.68 AT3G10720.1
AT3G10720
Plant invertase/pectin methylesterase inhibitor superfamily
Chr5_-_4171954 7.67 AT5G13140.1
AT5G13140
Pollen Ole e 1 allergen and extensin family protein
Chr5_-_18026077 7.39 AT5G44680.1
AT5G44680
DNA glycosylase superfamily protein
Chr2_-_15474717 7.36 AT2G36870.2
AT2G36870.1
XTH32
xyloglucan endotransglucosylase/hydrolase 32
Chr1_+_10722183 7.30 AT1G30380.1
PSAK
photosystem I subunit K
Chr1_+_17918207 7.25 AT1G48480.1
RKL1
receptor-like kinase 1
Chr1_-_4530222 7.21 AT1G13250.1
GATL3
galacturonosyltransferase-like 3
Chr5_+_426226 7.17 AT5G02160.1
AT5G02160
transmembrane protein
Chr2_-_15789605 7.12 AT2G37640.2
EXP3
Barwin-like endoglucanases superfamily protein
Chr2_-_15790139 7.09 AT2G37640.1
EXP3
Barwin-like endoglucanases superfamily protein
Chr3_-_7557969 7.08 AT3G21460.1
AT3G21460
Glutaredoxin family protein
Chr5_+_152446 7.06 AT5G01370.1
ACI1
ALC-interacting protein 1
Chr5_-_25373904 6.99 AT5G63310.1
NDPK2
nucleoside diphosphate kinase 2
Chr2_+_1676999 6.99 AT2G04780.2
FLA7
FASCICLIN-like arabinoogalactan 7
Chr1_+_25401514 6.99 AT1G67750.1
AT1G67750
Pectate lyase family protein
Chr1_+_24778257 6.97 AT1G66430.1
AT1G66430
pfkB-like carbohydrate kinase family protein
Chr4_-_17355891 6.88 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
AT4G36850
PQ-loop repeat family protein / transmembrane family protein
Chr1_-_21614169 6.87 AT1G58270.1
ZW9
TRAF-like family protein
Chr2_+_1676717 6.82 AT2G04780.1
FLA7
FASCICLIN-like arabinoogalactan 7
Chr4_-_16583075 6.80 AT4G34760.1
AT4G34760
SAUR-like auxin-responsive protein family
Chr5_+_3889906 6.78 AT5G12050.1
AT5G12050
rho GTPase-activating protein
Chr3_-_19595834 6.75 AT3G52870.1
AT3G52870
IQ calmodulin-binding motif family protein
Chr1_+_9421009 6.73 AT1G27120.1
AT1G27120.2
AT1G27120
Galactosyltransferase family protein
Chr5_-_2185972 6.72 AT5G07030.1
AT5G07030
Eukaryotic aspartyl protease family protein
Chr4_+_14149849 6.62 AT4G28660.1
AT4G28660.2
PSB28
photosystem II reaction center PSB28 protein
Chr1_+_5058583 6.54 AT1G14700.4
AT1G14700.1
AT1G14700.3
AT1G14700.2
PAP3
purple acid phosphatase 3
Chr3_+_8586359 6.51 AT3G23805.1
RALFL24
ralf-like 24
Chr5_+_16468327 6.50 AT5G41140.1
AT5G41140.2
AT5G41140
Myosin heavy chain-related protein
Chr1_-_9251659 6.50 AT1G26761.1
AT1G26761
Arabinanase/levansucrase/invertase
Chr5_-_8707885 6.46 AT5G25190.1
ESE3
Integrase-type DNA-binding superfamily protein
Chr3_-_15617149 6.45 AT3G43720.2
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_13208683 6.44 AT1G35680.1
RPL21C
Ribosomal protein L21
Chr3_+_8610979 6.43 AT3G23840.1
AT3G23840
HXXXD-type acyl-transferase family protein
Chr1_+_418726 6.43 AT1G02205.4
AT1G02205.3
AT1G02205.5
AT1G02205.1
CER1
Fatty acid hydroxylase superfamily
Chr3_-_15617309 6.38 AT3G43720.1
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_+_17949416 6.37 AT3G48460.1
AT3G48460
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_-_20712386 6.33 AT5G50915.4
AT5G50915.2
AT5G50915.1
AT5G50915.3
AT5G50915
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_17581275 6.30 AT5G43750.1
PnsB5
NAD(P)H dehydrogenase 18
Chr2_+_13647699 6.20 AT2G32100.1
OFP16
ovate family protein 16
Chr5_-_18371021 6.20 AT5G45340.2
AT5G45340.1
CYP707A3
cytochrome P450, family 707, subfamily A, polypeptide 3
Chr1_-_4265156 6.20 AT1G12500.1
AT1G12500
Nucleotide-sugar transporter family protein
Chr4_-_15059846 6.18 AT4G30950.1
FAD6
fatty acid desaturase 6
Chr3_-_373805 6.13 AT3G02110.1
scpl25
serine carboxypeptidase-like 25
Chr3_+_10017321 6.12 AT3G27160.1
AT3G27160.2
GHS1
Ribosomal protein S21 family protein
Chr5_-_671687 6.10 AT5G02890.1
AT5G02890
HXXXD-type acyl-transferase family protein
Chr5_+_19825078 6.09 AT5G48900.1
AT5G48900
Pectin lyase-like superfamily protein
Chr1_+_11343854 6.09 AT1G31690.1
AT1G31690
Copper amine oxidase family protein
Chr2_-_12173951 6.08 AT2G28470.2
AT2G28470.4
AT2G28470.1
AT2G28470.3
BGAL8
beta-galactosidase 8
Chr4_-_7353117 6.07 AT4G12420.1
AT4G12420.2
SKU5
Cupredoxin superfamily protein
Chr5_-_24990331 6.04 AT5G62220.1
GT18
glycosyltransferase 18
Chr1_+_28428671 6.02 AT1G75710.1
AT1G75710
C2H2-like zinc finger protein
Chr1_-_15607966 5.97 AT1G41830.1
SKS6
SKU5-similar 6
Chr3_+_2564153 5.93 AT3G08030.2
AT3G08030
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
Chr3_+_2563803 5.92 AT3G08030.1
AT3G08030
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
Chr4_-_17181261 5.89 AT4G36360.2
BGAL3
beta-galactosidase 3
Chr1_+_4899045 5.88 AT1G14345.1
AT1G14345
NAD(P)-linked oxidoreductase superfamily protein
Chr5_+_208866 5.88 AT5G01530.1
LHCB4.1
light harvesting complex photosystem II
Chr5_+_18945543 5.86 AT5G46690.2
AT5G46690.1
bHLH071
beta HLH protein 71
Chr3_-_5469594 5.86 AT3G16140.1
PSAH-1
photosystem I subunit H-1
Chr4_-_17181466 5.86 AT4G36360.1
BGAL3
beta-galactosidase 3
Chr3_-_6436046 5.84 AT3G18710.1
PUB29
plant U-box 29
Chr1_+_23911024 5.82 AT1G64390.1
GH9C2
glycosyl hydrolase 9C2
Chr3_-_1136397 5.81 AT3G04290.1
LTL1
Li-tolerant lipase 1
Chr2_+_266559 5.74 AT2G01590.1
AT2G01590.2
CRR3
chlororespiratory reduction 3
Chr1_+_1231452 5.71 AT1G04520.1
PDLP2
plasmodesmata-located protein 2
Chr4_+_160643 5.66 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr5_+_20945676 5.56 AT5G51560.1
AT5G51560
Leucine-rich repeat protein kinase family protein
Chr4_+_16708552 5.49 AT4G35100.2
PIP3
plasma membrane intrinsic protein 3
Chr1_-_29485389 5.49 AT1G78370.1
GSTU20
glutathione S-transferase TAU 20
Chr4_+_16708361 5.48 AT4G35100.1
PIP3
plasma membrane intrinsic protein 3
Chr1_+_4839801 5.43 AT1G14150.1
AT1G14150.2
PnsL2
PsbQ-like 2
Chr1_-_28581315 5.43 AT1G76160.1
sks5
SKU5 similar 5
Chr1_+_7696427 5.43 AT1G21910.1
DREB26
Integrase-type DNA-binding superfamily protein
Chr4_-_10278794 5.42 AT4G18670.1
AT4G18670
Leucine-rich repeat (LRR) family protein
Chr4_-_16384468 5.42 AT4G34220.1
AT4G34220
Leucine-rich repeat protein kinase family protein
Chr1_+_3530353 5.41 AT1G10657.4
AT1G10657.2
AT1G10657.3
AT1G10657.1
AT1G10657
transmembrane protein
Chr4_+_14944129 5.40 AT4G30610.1
BRS1
alpha/beta-Hydrolases superfamily protein
Chr1_+_1136078 5.38 AT1G04250.1
AXR3
AUX/IAA transcriptional regulator family protein
Chr3_+_20780175 5.33 AT3G55990.1
ESK1
trichome birefringence-like protein (DUF828)
Chr4_+_10651744 5.33 AT4G19530.1
AT4G19530.2
AT4G19530
disease resistance protein (TIR-NBS-LRR class) family
Chr1_+_11396402 5.32 AT1G31800.1
CYP97A3
cytochrome P450, family 97, subfamily A, polypeptide 3
Chr2_-_1824480 5.32 AT2G05100.1
AT2G05100.2
LHCB2.1
photosystem II light harvesting complex protein 2.1
Chr3_-_2216483 5.32 AT3G07010.1
AT3G07010.2
AT3G07010
Pectin lyase-like superfamily protein
Chr4_+_11663186 5.27 AT4G22010.1
sks4
SKU5 similar 4
Chr5_-_5072492 5.23 AT5G15580.1
LNG1
longifolia1
Chr5_+_6387341 5.21 AT5G19090.1
AT5G19090.4
AT5G19090.3
AT5G19090.2
AT5G19090
Heavy metal transport/detoxification superfamily protein
Chr2_-_17837618 5.20 AT2G42870.1
PAR1
phy rapidly regulated 1
Chr1_-_1169034 5.18 AT1G04360.1
AT1G04360
RING/U-box superfamily protein
Chr2_+_6542166 5.17 AT2G15090.1
KCS8
3-ketoacyl-CoA synthase 8
Chr1_+_27991165 5.15 AT1G74470.1
AT1G74470
Pyridine nucleotide-disulfide oxidoreductase family protein
Chr3_-_6980523 5.13 AT3G20015.1
AT3G20015
Eukaryotic aspartyl protease family protein
Chr4_+_17986384 5.10 AT4G38430.1
ROPGEF1
rho guanyl-nucleotide exchange factor 1
Chr5_-_20940895 5.10 AT5G51550.1
EXL3
EXORDIUM like 3
Chr1_+_23144385 5.10 AT1G62520.1
AT1G62520
sulfated surface-like glycoprotein
Chr5_-_3278461 5.09 AT5G10430.1
AGP4
arabinogalactan protein 4
Chr1_+_20101299 5.09 AT1G53840.1
PME1
pectin methylesterase 1
Chr5_+_24494291 5.08 AT5G60890.1
MYB34
myb domain protein 34
Chr3_-_3277930 5.07 AT3G10520.1
HB2
hemoglobin 2
Chr3_+_19713799 5.00 AT3G53190.1
AT3G53190
Pectin lyase-like superfamily protein
Chr2_+_9948594 4.99 AT2G23360.1
AT2G23360
filament-like protein (DUF869)
Chr2_-_12785037 4.99 AT2G29980.2
FAD3
fatty acid desaturase 3
Chr3_-_18559326 4.97 AT3G50060.1
MYB77
myb domain protein 77
Chr1_+_24647121 4.93 AT1G66180.1
AT1G66180
Eukaryotic aspartyl protease family protein
Chr5_+_24167996 4.92 AT5G60020.1
AT5G60020.2
LAC17
laccase 17
Chr2_-_11173278 4.92 AT2G26250.1
KCS10
3-ketoacyl-CoA synthase 10
Chr2_-_12785190 4.92 AT2G29980.1
FAD3
fatty acid desaturase 3
Chr4_-_14439723 4.91 AT4G29310.1
AT4G29310.2
AT4G29310
DUF1005 family protein (DUF1005)
Chr1_+_418416 4.91 AT1G02205.2
CER1
Fatty acid hydroxylase superfamily
Chr1_+_18290942 4.89 AT1G49430.1
AT1G49430.2
LACS2
long-chain acyl-CoA synthetase 2
Chr4_-_15312987 4.86 AT4G31590.1
CSLC5
Cellulose-synthase-like C5
Chr5_+_1912013 4.85 AT5G06270.2
AT5G06270.1
AT5G06270
hypothetical protein
Chr1_-_3518035 4.85 AT1G10640.1
AT1G10640
Pectin lyase-like superfamily protein
Chr5_+_16151772 4.83 AT5G40380.3
AT5G40380.2
CRK42
cysteine-rich RLK (RECEPTOR-like protein kinase) 42
Chr3_-_1855063 4.78 AT3G06130.2
AT3G06130.1
AT3G06130
Heavy metal transport/detoxification superfamily protein
Chr4_+_9906821 4.77 AT4G17810.1
AT4G17810.2
AT4G17810
C2H2 and C2HC zinc fingers superfamily protein
Chr1_-_8235019 4.72 AT1G23205.1
AT1G23205
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr2_+_19469571 4.72 AT2G47440.2
AT2G47440.1
AT2G47440
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_+_957112 4.72 AT3G03780.1
AT3G03780.3
MS2
methionine synthase 2
Chr5_+_24240810 4.71 AT5G60200.1
TMO6
TARGET OF MONOPTEROS 6
Chr3_+_10505711 4.70 AT3G28180.1
CSLC04
Cellulose-synthase-like C4
Chr2_-_14322082 4.69 AT2G33850.1
AT2G33850
E6-like protein
Chr2_-_10304812 4.69 AT2G24230.1
AT2G24230
Leucine-rich repeat protein kinase family protein
Chr1_+_17065858 4.68 AT1G45130.2
BGAL5
beta-galactosidase 5
Chr4_-_14827211 4.66 AT4G30280.1
XTH18
xyloglucan endotransglucosylase/hydrolase 18
Chr3_+_956862 4.66 AT3G03780.2
MS2
methionine synthase 2
Chr3_-_22322661 4.65 AT3G60390.1
HAT3
homeobox-leucine zipper protein 3
Chr1_+_26439556 4.65 AT1G70210.1
CYCD1%3B1
CYCLIN D1;1
Chr4_+_14192569 4.60 AT4G28720.1
YUC8
Flavin-binding monooxygenase family protein
Chr4_-_8016582 4.60 AT4G13840.1
AT4G13840
HXXXD-type acyl-transferase family protein
Chr1_-_17133809 4.58 AT1G45207.3
AT1G45207
Remorin family protein
Chr1_+_1843463 4.58 AT1G06080.1
AT1G06080.2
ADS1
delta 9 desaturase 1
Chr3_-_22256177 4.55 AT3G60220.1
ATL4
TOXICOS EN LEVADURA 4
Chr2_+_15934244 4.55 AT2G38080.1
IRX12
Laccase/Diphenol oxidase family protein
Chr5_-_16061043 4.55 AT5G40150.1
AT5G40150
Peroxidase superfamily protein
Chr4_+_12376122 4.55 AT4G23750.1
AT4G23750.2
CRF2
cytokinin response factor 2
Chr5_+_25016860 4.54 AT5G62280.1
AT5G62280
DUF1442 family protein (DUF1442)
Chr3_+_4128334 4.54 AT3G12930.1
AT3G12930
Lojap-related protein
Chr5_-_25775429 4.53 AT5G64460.4
AT5G64460.6
AT5G64460.9
AT5G64460.7
AT5G64460.8
AT5G64460.1
AT5G64460.10
AT5G64460.11
AT5G64460.5
AT5G64460.3
AT5G64460.2
AT5G64460
Phosphoglycerate mutase family protein
Chr5_+_23374873 4.52 AT5G57700.3
AT5G57700.2
AT5G57700.1
AT5G57700.5
AT5G57700
BNR/Asp-box repeat family protein
Chr2_-_7768040 4.51 AT2G17880.1
AT2G17880
Chaperone DnaJ-domain superfamily protein
Chr1_+_17065111 4.51 AT1G45130.1
BGAL5
beta-galactosidase 5
Chr4_-_18510555 4.51 AT4G39900.1
AT4G39900
adenine deaminase
Chr3_-_8290164 4.48 AT3G23230.1
TDR1
Integrase-type DNA-binding superfamily protein
Chr5_-_3190321 4.47 AT5G10170.1
MIPS3
myo-inositol-1-phosphate synthase 3
Chr5_+_8042853 4.46 AT5G23860.1
AT5G23860.2
TUB8
tubulin beta 8
Chr5_+_25159208 4.46 AT5G62670.1
HA11
H[+]-ATPase 11
Chr3_-_10877578 4.45 AT3G28860.1
ABCB19
ATP binding cassette subfamily B19
Chr5_-_21724642 4.44 AT5G53490.3
AT5G53490.2
AT5G53490.1
AT5G53490.4
AT5G53490
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_16861527 4.43 AT3G45850.1
AT3G45850.2
AT3G45850
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_-_19747114 4.43 AT3G53260.1
PAL2
phenylalanine ammonia-lyase 2
Chr3_-_8872346 4.43 AT3G24430.1
HCF101
ATP binding protein
Chr1_+_19879405 4.40 AT1G53300.1
TTL1
tetratricopetide-repeat thioredoxin-like 1
Chr3_+_20984635 4.37 AT3G56650.1
PPD6
thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)
Chr5_+_7529292 4.35 AT5G22640.3
AT5G22640.1
AT5G22640.2
emb1211
MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein
Chr1_+_26983615 4.35 AT1G71720.1
AT1G71720.2
PDE338
Nucleic acid-binding proteins superfamily
Chr5_-_14199431 4.34 AT5G36120.1
CCB3
cofactor assembly, complex C (B6F)
Chr5_+_21226721 4.33 AT5G52280.1
AT5G52280
Myosin heavy chain-related protein
Chr1_-_29352946 4.33 AT1G78060.1
AT1G78060
Glycosyl hydrolase family protein
Chr2_-_15636522 4.33 AT2G37220.1
AT2G37220
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_+_25328119 4.32 AT5G63140.1
PAP29
purple acid phosphatase 29
Chr5_-_3728726 4.32 AT5G11590.1
TINY2
Integrase-type DNA-binding superfamily protein
Chr5_+_463073 4.30 AT5G02260.1
EXPA9
expansin A9
Chr5_+_17722402 4.29 AT5G44050.1
AT5G44050
MATE efflux family protein
Chr4_+_10231218 4.28 AT4G18570.2
AT4G18570.1
AT4G18570
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_+_8520819 4.28 AT4G14890.1
FdC1
2Fe-2S ferredoxin-like superfamily protein
Chr1_-_11774117 4.28 AT1G32550.2
FdC2
2Fe-2S ferredoxin-like superfamily protein
Chr3_+_18514266 4.27 AT3G49940.1
LBD38
LOB domain-containing protein 38
Chr3_+_21109414 4.27 AT3G57040.1
ARR9
response regulator 9
Chr4_-_9754161 4.27 AT4G17490.1
ERF6
ethylene responsive element binding factor 6
Chr2_-_5776289 4.25 AT2G13820.2
AT2G13820.1
AT2G13820.3
XYP2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G28920

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
3.9 50.9 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
2.2 9.0 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
2.2 6.7 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
2.2 13.1 GO:0009769 photosynthesis, light harvesting in photosystem II(GO:0009769)
2.2 6.5 GO:0042407 cristae formation(GO:0042407)
2.1 14.7 GO:0043446 cellular alkane metabolic process(GO:0043446)
2.0 8.1 GO:0015669 gas transport(GO:0015669)
2.0 6.0 GO:0010541 acropetal auxin transport(GO:0010541)
1.9 9.4 GO:1903175 fatty alcohol biosynthetic process(GO:1903175)
1.8 5.5 GO:0090058 metaxylem development(GO:0090058)
1.7 5.1 GO:0010198 synergid death(GO:0010198)
1.6 4.8 GO:0043471 regulation of glycolytic process(GO:0006110) regulation of nucleotide catabolic process(GO:0030811) regulation of carbohydrate catabolic process(GO:0043470) regulation of cellular carbohydrate catabolic process(GO:0043471)
1.5 4.6 GO:1903889 negative regulation of cell fate specification(GO:0009996) negative regulation of trichoblast fate specification(GO:0010062) negative regulation of plant epidermal cell differentiation(GO:1903889)
1.5 6.1 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
1.5 10.5 GO:1904276 regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278)
1.5 8.7 GO:0006228 UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051)
1.3 6.3 GO:0010086 embryonic root morphogenesis(GO:0010086)
1.3 7.5 GO:0031116 positive regulation of microtubule polymerization(GO:0031116)
1.2 2.5 GO:0090059 protoxylem development(GO:0090059)
1.2 1.2 GO:0048657 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
1.2 4.8 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
1.2 8.4 GO:0010067 procambium histogenesis(GO:0010067)
1.2 4.7 GO:0015965 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
1.2 11.7 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
1.2 5.8 GO:0010226 response to lithium ion(GO:0010226)
1.1 5.7 GO:0019218 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
1.1 4.4 GO:0090308 regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
1.1 3.3 GO:0080190 secondary growth(GO:0080117) lateral growth(GO:0080190)
1.1 3.3 GO:0015717 triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436)
1.1 3.2 GO:0009805 coumarin biosynthetic process(GO:0009805)
1.1 9.5 GO:0051513 regulation of monopolar cell growth(GO:0051513)
1.0 4.1 GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly(GO:0010606)
1.0 5.0 GO:0046713 borate transport(GO:0046713)
1.0 5.9 GO:0010451 floral meristem growth(GO:0010451)
1.0 18.5 GO:0006949 syncytium formation(GO:0006949)
1.0 5.8 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
1.0 3.9 GO:1902932 positive regulation of abscisic acid biosynthetic process(GO:0010116) positive regulation of alcohol biosynthetic process(GO:1902932)
0.9 1.9 GO:0007349 cellularization(GO:0007349)
0.9 3.7 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.9 10.3 GO:1901348 positive regulation of secondary cell wall biogenesis(GO:1901348)
0.9 15.3 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.9 8.9 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.9 6.2 GO:0009772 photosynthetic electron transport in photosystem II(GO:0009772)
0.9 1.7 GO:0042539 hypotonic salinity response(GO:0042539)
0.9 10.4 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.9 1.7 GO:0090628 plant epidermal cell fate specification(GO:0090628)
0.9 1.7 GO:0043480 pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.9 5.1 GO:0051098 regulation of binding(GO:0051098)
0.8 5.1 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.8 9.3 GO:0043155 photoinhibition(GO:0010205) negative regulation of photosynthesis, light reaction(GO:0043155)
0.8 3.4 GO:0006065 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.8 4.2 GO:0033206 meiotic cytokinesis(GO:0033206)
0.8 3.3 GO:0080003 thalianol metabolic process(GO:0080003)
0.8 2.5 GO:0051415 interphase microtubule nucleation by interphase microtubule organizing center(GO:0051415) microtubule nucleation by microtubule organizing center(GO:0051418)
0.8 3.3 GO:0018023 peptidyl-lysine trimethylation(GO:0018023)
0.8 2.5 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
0.8 4.8 GO:0090057 root radial pattern formation(GO:0090057)
0.8 2.4 GO:0071258 cellular response to gravity(GO:0071258)
0.8 0.8 GO:0010254 nectary development(GO:0010254)
0.8 2.3 GO:0001736 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.8 3.9 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.8 5.3 GO:0045492 xylan biosynthetic process(GO:0045492)
0.8 4.5 GO:0006346 methylation-dependent chromatin silencing(GO:0006346)
0.8 4.5 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.8 3.0 GO:0043157 response to cation stress(GO:0043157)
0.7 3.0 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.7 5.1 GO:0006775 fat-soluble vitamin metabolic process(GO:0006775) fat-soluble vitamin biosynthetic process(GO:0042362)
0.7 61.8 GO:0045490 pectin catabolic process(GO:0045490)
0.7 5.0 GO:0016103 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.7 2.1 GO:0042817 pyridoxal metabolic process(GO:0042817)
0.7 2.1 GO:0015755 hexose transport(GO:0008645) fructose transport(GO:0015755) vacuolar transmembrane transport(GO:0034486)
0.7 12.7 GO:0009641 shade avoidance(GO:0009641)
0.7 10.4 GO:0030497 fatty acid elongation(GO:0030497)
0.7 12.4 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.7 7.5 GO:0010047 fruit dehiscence(GO:0010047)
0.7 8.2 GO:0018904 ether metabolic process(GO:0018904)
0.7 16.2 GO:0060429 epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855) epithelium development(GO:0060429)
0.7 2.7 GO:0019499 cyanide metabolic process(GO:0019499)
0.7 2.6 GO:0009831 plant-type cell wall modification involved in multidimensional cell growth(GO:0009831)
0.7 5.9 GO:0071249 cellular response to nitrate(GO:0071249)
0.7 4.0 GO:0048629 trichome patterning(GO:0048629)
0.7 3.3 GO:0006788 heme oxidation(GO:0006788)
0.6 4.5 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.6 1.9 GO:0034389 lipid particle organization(GO:0034389)
0.6 4.5 GO:0006021 inositol biosynthetic process(GO:0006021)
0.6 1.9 GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060211) regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151)
0.6 1.3 GO:0032414 positive regulation of transporter activity(GO:0032411) positive regulation of ion transmembrane transporter activity(GO:0032414) positive regulation of ion transmembrane transport(GO:0034767) positive regulation of anion channel activity(GO:1901529) positive regulation of anion transport(GO:1903793) positive regulation of anion transmembrane transport(GO:1903961)
0.6 8.2 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.6 3.2 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.6 4.4 GO:0010155 regulation of proton transport(GO:0010155)
0.6 1.9 GO:0033321 homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506)
0.6 3.1 GO:0042659 regulation of cell fate specification(GO:0042659)
0.6 2.4 GO:0070206 protein trimerization(GO:0070206)
0.6 2.4 GO:0001887 selenium compound metabolic process(GO:0001887)
0.6 2.4 GO:0010495 long-distance posttranscriptional gene silencing(GO:0010495)
0.6 17.2 GO:0006284 base-excision repair(GO:0006284)
0.6 1.8 GO:0033194 response to hydroperoxide(GO:0033194)
0.6 4.7 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.6 42.5 GO:0007018 microtubule-based movement(GO:0007018)
0.6 9.3 GO:0009767 photosynthetic electron transport chain(GO:0009767)
0.6 1.7 GO:0015812 gamma-aminobutyric acid transport(GO:0015812)
0.6 2.8 GO:0035627 ceramide transport(GO:0035627)
0.5 3.3 GO:0046104 deoxyribonucleoside metabolic process(GO:0009120) thymidine metabolic process(GO:0046104) pyrimidine deoxyribonucleoside metabolic process(GO:0046125)
0.5 32.8 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.5 4.3 GO:0043489 RNA stabilization(GO:0043489)
0.5 1.6 GO:0009747 hexokinase-dependent signaling(GO:0009747)
0.5 36.9 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.5 4.3 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.5 2.1 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.5 12.2 GO:0042335 cuticle development(GO:0042335)
0.5 2.1 GO:0090342 regulation of cell aging(GO:0090342)
0.5 1.0 GO:0046373 L-arabinose metabolic process(GO:0046373)
0.5 4.1 GO:0009819 drought recovery(GO:0009819)
0.5 6.1 GO:0007143 female meiotic division(GO:0007143)
0.5 11.1 GO:0010025 wax biosynthetic process(GO:0010025)
0.5 1.5 GO:0010424 DNA methylation on cytosine within a CG sequence(GO:0010424)
0.5 4.5 GO:0070828 heterochromatin organization(GO:0070828)
0.5 4.4 GO:0043096 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.5 6.8 GO:0010274 hydrotropism(GO:0010274)
0.5 2.4 GO:0072501 cellular divalent inorganic anion homeostasis(GO:0072501)
0.5 7.1 GO:0009750 response to fructose(GO:0009750)
0.5 3.3 GO:1904482 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.5 7.9 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.5 1.4 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.5 0.5 GO:2000142 regulation of DNA-templated transcription, initiation(GO:2000142)
0.4 2.2 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.4 0.4 GO:0009804 coumarin metabolic process(GO:0009804)
0.4 0.4 GO:0001560 regulation of cell growth by extracellular stimulus(GO:0001560)
0.4 0.9 GO:0048533 sporocyte differentiation(GO:0048533)
0.4 3.0 GO:0042350 GDP-L-fucose biosynthetic process(GO:0042350) GDP-L-fucose metabolic process(GO:0046368)
0.4 3.0 GO:0009099 valine biosynthetic process(GO:0009099)
0.4 2.6 GO:0051571 positive regulation of histone H3-K4 methylation(GO:0051571)
0.4 2.9 GO:0034315 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.4 1.7 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.4 3.6 GO:0033320 UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.4 1.2 GO:0048577 negative regulation of short-day photoperiodism, flowering(GO:0048577)
0.4 1.6 GO:0016099 monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099)
0.4 1.2 GO:0019365 pyridine nucleotide salvage(GO:0019365)
0.4 10.2 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.4 4.2 GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0019288)
0.4 6.1 GO:0006538 glutamate catabolic process(GO:0006538)
0.4 1.1 GO:2000067 regulation of root morphogenesis(GO:2000067)
0.4 6.8 GO:0006833 water transport(GO:0006833) fluid transport(GO:0042044)
0.4 4.1 GO:0010233 vascular transport(GO:0010232) phloem transport(GO:0010233)
0.4 2.9 GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement(GO:1901527)
0.4 4.4 GO:0048564 photosystem I assembly(GO:0048564)
0.4 6.2 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.4 2.2 GO:0006013 mannose metabolic process(GO:0006013)
0.4 24.0 GO:0009736 cytokinin-activated signaling pathway(GO:0009736)
0.4 1.1 GO:0042891 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891)
0.4 7.5 GO:0045493 xylan catabolic process(GO:0045493)
0.4 2.1 GO:0042981 apoptotic process(GO:0006915) regulation of apoptotic process(GO:0042981) negative regulation of apoptotic process(GO:0043066)
0.4 5.6 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.3 1.0 GO:0010434 bract morphogenesis(GO:0010433) bract formation(GO:0010434)
0.3 2.1 GO:0044848 cell cycle phase(GO:0022403) biological phase(GO:0044848) mitotic cell cycle phase(GO:0098763)
0.3 8.7 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.3 3.0 GO:0009954 proximal/distal pattern formation(GO:0009954)
0.3 5.4 GO:0019432 triglyceride biosynthetic process(GO:0019432)
0.3 6.7 GO:2000008 regulation of protein localization to cell surface(GO:2000008)
0.3 4.3 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.3 1.0 GO:0035493 SNARE complex assembly(GO:0035493)
0.3 2.0 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.3 1.0 GO:0010185 regulation of cellular defense response(GO:0010185)
0.3 1.9 GO:0000719 photoreactive repair(GO:0000719) UV protection(GO:0009650)
0.3 1.3 GO:0009647 skotomorphogenesis(GO:0009647)
0.3 3.1 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.3 6.2 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.3 0.9 GO:0034502 protein localization to chromosome(GO:0034502)
0.3 3.6 GO:0046739 movement in host(GO:0044000) transport of virus in multicellular host(GO:0046739) movement in other organism involved in symbiotic interaction(GO:0051814) movement in host environment(GO:0052126) movement in environment of other organism involved in symbiotic interaction(GO:0052192)
0.3 3.8 GO:0016109 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.3 1.4 GO:0034497 protein localization to pre-autophagosomal structure(GO:0034497)
0.3 0.8 GO:1990532 stress response to nickel ion(GO:1990532)
0.3 4.4 GO:0010492 maintenance of shoot apical meristem identity(GO:0010492)
0.3 1.9 GO:0006022 aminoglycan metabolic process(GO:0006022) aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.3 1.4 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.3 3.2 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.3 1.6 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.3 1.8 GO:2000904 regulation of starch metabolic process(GO:2000904)
0.3 6.0 GO:0010103 stomatal complex morphogenesis(GO:0010103)
0.3 0.8 GO:1990882 rRNA acetylation involved in maturation of SSU-rRNA(GO:1904812) rRNA acetylation(GO:1990882) RNA acetylation(GO:1990884)
0.3 1.8 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655) phosphatidylglycerol metabolic process(GO:0046471)
0.3 1.0 GO:0033499 galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499)
0.3 2.6 GO:0097577 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.3 1.8 GO:0044211 CTP salvage(GO:0044211)
0.3 1.0 GO:1904961 quiescent center organization(GO:1904961)
0.2 0.7 GO:0001894 tissue homeostasis(GO:0001894) homeostasis of number of meristem cells(GO:0007639) homeostasis of number of cells(GO:0048872) homeostasis of number of cells within a tissue(GO:0048873)
0.2 0.7 GO:0009102 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102)
0.2 3.8 GO:0050779 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.2 2.2 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.2 1.4 GO:0070212 protein ADP-ribosylation(GO:0006471) protein poly-ADP-ribosylation(GO:0070212)
0.2 1.0 GO:0090322 regulation of superoxide metabolic process(GO:0090322)
0.2 0.9 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.2 0.7 GO:0070981 L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982)
0.2 1.4 GO:0034059 response to anoxia(GO:0034059)
0.2 4.5 GO:0010227 floral organ abscission(GO:0010227)
0.2 0.7 GO:0006750 glutathione biosynthetic process(GO:0006750) nonribosomal peptide biosynthetic process(GO:0019184)
0.2 2.0 GO:0010262 somatic embryogenesis(GO:0010262)
0.2 0.4 GO:0080175 phragmoplast microtubule organization(GO:0080175)
0.2 5.1 GO:0009685 gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686)
0.2 0.7 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.2 0.2 GO:0042177 negative regulation of protein catabolic process(GO:0042177)
0.2 5.2 GO:0010584 pollen exine formation(GO:0010584)
0.2 2.2 GO:0016553 base conversion or substitution editing(GO:0016553) cytidine to uridine editing(GO:0016554)
0.2 0.6 GO:1902458 positive regulation of stomatal opening(GO:1902458)
0.2 3.6 GO:0010152 pollen maturation(GO:0010152)
0.2 2.1 GO:0050691 regulation of defense response to virus by host(GO:0050691)
0.2 1.9 GO:0010358 leaf shaping(GO:0010358)
0.2 4.8 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.2 2.1 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.2 2.0 GO:0010074 maintenance of meristem identity(GO:0010074)
0.2 2.4 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.2 16.8 GO:0009741 response to brassinosteroid(GO:0009741)
0.2 3.0 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.2 1.0 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.2 1.2 GO:0009972 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.2 1.4 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.2 0.6 GO:0044208 'de novo' AMP biosynthetic process(GO:0044208)
0.2 2.1 GO:0080028 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.2 2.9 GO:0009299 mRNA transcription(GO:0009299)
0.2 3.2 GO:0006075 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.2 1.7 GO:0031936 negative regulation of chromatin silencing(GO:0031936)
0.2 1.7 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.2 1.3 GO:0009435 NAD biosynthetic process(GO:0009435)
0.2 3.5 GO:0005983 starch catabolic process(GO:0005983)
0.2 1.3 GO:0000244 spliceosomal tri-snRNP complex assembly(GO:0000244)
0.2 1.8 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.2 4.3 GO:0050826 response to freezing(GO:0050826)
0.2 2.1 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.2 2.4 GO:0045839 negative regulation of mitotic nuclear division(GO:0045839)
0.2 3.4 GO:0090333 regulation of stomatal closure(GO:0090333)
0.2 1.2 GO:0043410 positive regulation of MAPK cascade(GO:0043410)
0.2 3.0 GO:0009943 adaxial/abaxial axis specification(GO:0009943) polarity specification of adaxial/abaxial axis(GO:0009944) specification of axis polarity(GO:0065001)
0.2 2.0 GO:0009870 defense response signaling pathway, resistance gene-dependent(GO:0009870)
0.2 2.1 GO:0010093 specification of floral organ identity(GO:0010093)
0.2 2.5 GO:0019853 L-ascorbic acid biosynthetic process(GO:0019853)
0.2 1.8 GO:0071051 polyadenylation-dependent snoRNA 3'-end processing(GO:0071051)
0.2 0.6 GO:0046622 positive regulation of organ growth(GO:0046622)
0.2 1.6 GO:0007076 mitotic chromosome condensation(GO:0007076)
0.2 2.7 GO:0009583 phototransduction(GO:0007602) detection of light stimulus(GO:0009583) red, far-red light phototransduction(GO:0009585)
0.2 5.6 GO:0009668 plastid membrane organization(GO:0009668)
0.2 0.8 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.1 3.9 GO:0080022 primary root development(GO:0080022)
0.1 0.9 GO:0033517 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.1 3.3 GO:0016226 iron-sulfur cluster assembly(GO:0016226) metallo-sulfur cluster assembly(GO:0031163)
0.1 1.3 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.1 4.9 GO:0035266 meristem growth(GO:0035266)
0.1 1.4 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961)
0.1 6.9 GO:0010102 post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102)
0.1 1.5 GO:0009955 adaxial/abaxial pattern specification(GO:0009955)
0.1 3.3 GO:0006730 one-carbon metabolic process(GO:0006730)
0.1 0.6 GO:0043153 entrainment of circadian clock by photoperiod(GO:0043153)
0.1 0.7 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.1 1.7 GO:0010582 floral meristem determinacy(GO:0010582)
0.1 0.7 GO:0051096 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.1 1.0 GO:0071585 detoxification of cadmium ion(GO:0071585)
0.1 4.0 GO:0030641 regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453)
0.1 1.2 GO:0006814 sodium ion transport(GO:0006814)
0.1 1.2 GO:0009405 pathogenesis(GO:0009405)
0.1 11.2 GO:0015979 photosynthesis(GO:0015979)
0.1 2.3 GO:2000030 regulation of response to red or far red light(GO:2000030)
0.1 3.5 GO:0048510 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.1 0.3 GO:1901537 positive regulation of DNA demethylation(GO:1901537)
0.1 0.9 GO:0006879 cellular iron ion homeostasis(GO:0006879)
0.1 1.1 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.1 0.7 GO:0010396 rhamnogalacturonan II biosynthetic process(GO:0010306) rhamnogalacturonan II metabolic process(GO:0010396)
0.1 5.9 GO:0007267 cell-cell signaling(GO:0007267)
0.1 1.6 GO:0034644 cellular response to UV(GO:0034644)
0.1 0.3 GO:0046463 neutral lipid biosynthetic process(GO:0046460) acylglycerol biosynthetic process(GO:0046463)
0.1 1.2 GO:0006465 signal peptide processing(GO:0006465)
0.1 17.8 GO:0045944 positive regulation of transcription from RNA polymerase II promoter(GO:0045944)
0.1 2.1 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.1 0.8 GO:1990778 protein localization to plasma membrane(GO:0072659) protein localization to cell periphery(GO:1990778)
0.1 1.0 GO:2000032 regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032)
0.1 7.3 GO:0006633 fatty acid biosynthetic process(GO:0006633)
0.1 0.6 GO:0097502 mannosylation(GO:0097502)
0.1 1.1 GO:0010143 cutin biosynthetic process(GO:0010143)
0.1 1.7 GO:0050821 protein stabilization(GO:0050821)
0.1 0.5 GO:0019419 sulfate reduction(GO:0019419)
0.1 1.5 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.1 2.2 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.1 0.7 GO:0048209 regulation of vesicle targeting, to, from or within Golgi(GO:0048209)
0.1 0.9 GO:0017182 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.1 0.3 GO:0030030 cell projection organization(GO:0030030) cell projection assembly(GO:0030031)
0.1 4.4 GO:0022900 electron transport chain(GO:0022900)
0.1 0.2 GO:0010269 response to selenium ion(GO:0010269)
0.1 0.1 GO:0061087 positive regulation of histone H3-K27 methylation(GO:0061087)
0.1 1.1 GO:0009970 cellular response to sulfate starvation(GO:0009970)
0.1 0.4 GO:0016128 phytosteroid metabolic process(GO:0016128) brassinosteroid metabolic process(GO:0016131)
0.1 1.7 GO:0006108 malate metabolic process(GO:0006108)
0.1 3.0 GO:0061136 regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032434) positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) regulation of proteasomal protein catabolic process(GO:0061136) positive regulation of proteasomal protein catabolic process(GO:1901800)
0.1 0.6 GO:2000033 regulation of seed dormancy process(GO:2000033)
0.1 0.6 GO:0070816 phosphorylation of RNA polymerase II C-terminal domain(GO:0070816)
0.1 1.3 GO:0015743 malate transport(GO:0015743)
0.1 1.7 GO:0090630 activation of GTPase activity(GO:0090630)
0.1 1.7 GO:0009142 nucleoside triphosphate biosynthetic process(GO:0009142)
0.1 0.4 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 1.5 GO:0009959 negative gravitropism(GO:0009959)
0.1 1.0 GO:0018231 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.1 0.6 GO:0031425 chloroplast RNA processing(GO:0031425)
0.1 1.9 GO:0007264 small GTPase mediated signal transduction(GO:0007264)
0.1 1.3 GO:0006817 phosphate ion transport(GO:0006817)
0.1 1.6 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.1 0.3 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.1 1.7 GO:0006891 intra-Golgi vesicle-mediated transport(GO:0006891)
0.1 7.9 GO:0009860 pollen tube growth(GO:0009860)
0.1 1.0 GO:0042330 chemotaxis(GO:0006935) pollen tube guidance(GO:0010183) taxis(GO:0042330) positive chemotaxis(GO:0050918)
0.1 1.9 GO:0030050 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.1 0.9 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.1 3.4 GO:0048544 recognition of pollen(GO:0048544)
0.1 1.3 GO:0009825 multidimensional cell growth(GO:0009825)
0.1 1.4 GO:0006270 DNA replication initiation(GO:0006270)
0.1 1.9 GO:0007129 synapsis(GO:0007129)
0.1 0.6 GO:0009051 pentose-phosphate shunt, oxidative branch(GO:0009051)
0.0 0.2 GO:0015739 sialic acid transport(GO:0015739)
0.0 2.0 GO:0009630 gravitropism(GO:0009630)
0.0 0.2 GO:0009901 anther dehiscence(GO:0009901)
0.0 0.2 GO:0042276 error-prone translesion synthesis(GO:0042276)
0.0 1.2 GO:0009851 auxin biosynthetic process(GO:0009851)
0.0 0.6 GO:0070475 rRNA base methylation(GO:0070475)
0.0 0.1 GO:0097298 regulation of nucleus size(GO:0097298)
0.0 1.7 GO:0010026 trichome differentiation(GO:0010026)
0.0 0.8 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.0 0.5 GO:0043248 proteasome assembly(GO:0043248)
0.0 2.1 GO:0000724 double-strand break repair via homologous recombination(GO:0000724)
0.0 0.3 GO:1900618 regulation of shoot system morphogenesis(GO:1900618)
0.0 0.9 GO:0000028 ribosomal small subunit assembly(GO:0000028)
0.0 0.2 GO:0009061 anaerobic respiration(GO:0009061)
0.0 0.1 GO:0042989 sequestering of actin monomers(GO:0042989)
0.0 0.1 GO:0032963 collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259)
0.0 0.1 GO:0090646 mitochondrial tRNA processing(GO:0090646)
0.0 0.5 GO:0019252 starch biosynthetic process(GO:0019252)
0.0 0.2 GO:0010439 regulation of glucosinolate biosynthetic process(GO:0010439)
0.0 0.2 GO:0080086 stamen filament development(GO:0080086)
0.0 0.2 GO:0010030 positive regulation of seed germination(GO:0010030)
0.0 1.5 GO:0006869 lipid transport(GO:0006869)
0.0 0.1 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.0 0.2 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.0 GO:1904589 regulation of protein import(GO:1904589)
0.0 0.2 GO:0045927 positive regulation of growth(GO:0045927)
0.0 0.2 GO:0006265 DNA topological change(GO:0006265)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.7 5.0 GO:0043673 lateral plasma membrane(GO:0016328) pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
1.6 14.1 GO:0030076 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
1.3 56.3 GO:0010319 stromule(GO:0010319)
1.3 10.0 GO:0009538 photosystem I reaction center(GO:0009538)
1.2 29.9 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.9 14.8 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.8 11.0 GO:0045298 tubulin complex(GO:0045298)
0.8 13.1 GO:0009531 secondary cell wall(GO:0009531)
0.7 4.1 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.7 3.4 GO:0005719 nuclear euchromatin(GO:0005719)
0.6 1.9 GO:0005658 alpha DNA polymerase:primase complex(GO:0005658)
0.6 3.1 GO:0009523 photosystem II(GO:0009523)
0.5 5.3 GO:0016272 prefoldin complex(GO:0016272)
0.5 10.0 GO:0000792 heterochromatin(GO:0000792)
0.5 9.1 GO:0031012 extracellular matrix(GO:0031012)
0.5 76.7 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.5 1.4 GO:0034274 Atg12-Atg5-Atg16 complex(GO:0034274)
0.4 4.0 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.4 6.9 GO:0009986 cell surface(GO:0009986)
0.4 7.1 GO:0009574 preprophase band(GO:0009574)
0.4 9.9 GO:0005871 kinesin complex(GO:0005871)
0.4 2.5 GO:0000427 plastid-encoded plastid RNA polymerase complex(GO:0000427)
0.4 3.5 GO:0035618 root hair(GO:0035618)
0.4 1.1 GO:0043186 P granule(GO:0043186) pole plasm(GO:0045495) germ plasm(GO:0060293)
0.4 1.4 GO:0034045 pre-autophagosomal structure membrane(GO:0034045)
0.3 3.2 GO:0031209 SCAR complex(GO:0031209)
0.3 78.3 GO:0048046 apoplast(GO:0048046)
0.3 6.8 GO:0016324 apical plasma membrane(GO:0016324)
0.3 1.6 GO:0000796 condensin complex(GO:0000796)
0.3 7.9 GO:0055028 cortical microtubule(GO:0055028)
0.3 3.9 GO:0010287 plastoglobule(GO:0010287)
0.3 95.8 GO:0009579 thylakoid(GO:0009579)
0.2 0.9 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.2 13.8 GO:0005874 microtubule(GO:0005874)
0.2 5.1 GO:0005875 microtubule associated complex(GO:0005875)
0.2 1.4 GO:0005664 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.2 1.0 GO:0033263 CORVET complex(GO:0033263)
0.2 2.3 GO:0005763 mitochondrial small ribosomal subunit(GO:0005763)
0.2 0.7 GO:0042645 mitochondrial nucleoid(GO:0042645)
0.2 1.2 GO:0005787 signal peptidase complex(GO:0005787)
0.2 3.2 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.2 0.9 GO:0000778 condensed chromosome kinetochore(GO:0000777) condensed nuclear chromosome kinetochore(GO:0000778)
0.1 1.9 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.1 1.9 GO:0000795 synaptonemal complex(GO:0000795)
0.1 0.9 GO:0009360 DNA polymerase III complex(GO:0009360)
0.1 1.8 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.1 0.7 GO:0009569 chloroplast starch grain(GO:0009569) starch grain(GO:0043036)
0.1 0.5 GO:0030863 cortical cytoskeleton(GO:0030863)
0.1 0.1 GO:0005652 nuclear lamina(GO:0005652)
0.1 1.8 GO:0000176 nuclear exosome (RNase complex)(GO:0000176)
0.1 0.3 GO:0010369 chromocenter(GO:0010369)
0.1 254.7 GO:0005576 extracellular region(GO:0005576)
0.1 1.0 GO:0015030 Cajal body(GO:0015030)
0.1 0.4 GO:0030126 COPI vesicle coat(GO:0030126) COPI-coated vesicle membrane(GO:0030663)
0.1 3.1 GO:0000152 nuclear ubiquitin ligase complex(GO:0000152)
0.1 1.1 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.1 9.1 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.1 0.6 GO:0005677 chromatin silencing complex(GO:0005677)
0.1 0.6 GO:0000439 core TFIIH complex(GO:0000439)
0.1 0.3 GO:0034426 etioplast envelope(GO:0034425) etioplast membrane(GO:0034426)
0.1 1.4 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.1 0.2 GO:0008622 epsilon DNA polymerase complex(GO:0008622)
0.1 1.4 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.1 0.8 GO:0098554 integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458) cytoplasmic side of endoplasmic reticulum membrane(GO:0098554)
0.1 1.3 GO:0046540 U4/U6 x U5 tri-snRNP complex(GO:0046540)
0.1 0.3 GO:0010168 ER body(GO:0010168)
0.0 26.3 GO:0044434 chloroplast part(GO:0044434)
0.0 2.1 GO:0016607 nuclear speck(GO:0016607)
0.0 0.2 GO:0005732 small nucleolar ribonucleoprotein complex(GO:0005732)
0.0 0.5 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 0.3 GO:0000786 nucleosome(GO:0000786)
0.0 0.9 GO:0005747 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
3.8 11.3 GO:0071771 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
2.5 12.5 GO:0008705 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
2.2 6.5 GO:0005344 oxygen transporter activity(GO:0005344)
2.1 8.5 GO:0050162 oxalate oxidase activity(GO:0050162)
2.1 6.2 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
2.0 8.2 GO:0050734 hydroxycinnamoyltransferase activity(GO:0050734)
2.0 9.8 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
1.8 5.3 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
1.8 7.0 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
1.6 6.5 GO:0004817 cysteine-tRNA ligase activity(GO:0004817)
1.6 9.6 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
1.6 6.3 GO:0009784 transmembrane receptor histidine kinase activity(GO:0009784) transmembrane histidine kinase cytokinin receptor activity(GO:0009885)
1.6 12.6 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
1.5 49.5 GO:0004089 carbonate dehydratase activity(GO:0004089)
1.4 36.1 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
1.4 5.7 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
1.4 4.2 GO:0008311 phosphodiesterase I activity(GO:0004528) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
1.4 4.2 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
1.3 8.0 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
1.3 33.3 GO:0004565 beta-galactosidase activity(GO:0004565)
1.3 5.1 GO:0070818 oxygen-dependent protoporphyrinogen oxidase activity(GO:0004729) protoporphyrinogen oxidase activity(GO:0070818)
1.2 3.7 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
1.2 10.8 GO:0004550 nucleoside diphosphate kinase activity(GO:0004550)
1.2 4.8 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
1.2 15.4 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
1.1 4.5 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
1.1 10.0 GO:0004096 catalase activity(GO:0004096)
1.1 11.9 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
1.1 26.3 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
1.0 12.5 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
1.0 5.0 GO:0080139 borate transmembrane transporter activity(GO:0046715) borate efflux transmembrane transporter activity(GO:0080139)
1.0 2.9 GO:0080104 3-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080102) 5-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080104) 7-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080106)
0.9 10.1 GO:0008725 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.9 5.5 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.9 3.5 GO:0004556 alpha-amylase activity(GO:0004556)
0.9 3.4 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.8 5.1 GO:0051723 protein methylesterase activity(GO:0051723)
0.8 17.2 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.8 4.0 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.8 0.8 GO:0050997 phosphatidylcholine binding(GO:0031210) quaternary ammonium group binding(GO:0050997)
0.8 17.6 GO:0102337 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.8 16.8 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.8 5.3 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.7 3.7 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.7 5.9 GO:0052623 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.7 2.2 GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
0.7 6.5 GO:0010428 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.7 3.6 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.7 4.9 GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019)
0.7 3.4 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.7 2.0 GO:0050412 cinnamate beta-D-glucosyltransferase activity(GO:0050412)
0.7 6.5 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.6 2.6 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)
0.6 5.2 GO:0004392 heme oxygenase (decyclizing) activity(GO:0004392)
0.6 5.1 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.6 1.9 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.6 12.6 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.6 3.2 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.6 3.8 GO:0050302 aryl-aldehyde oxidase activity(GO:0018488) indole-3-acetaldehyde oxidase activity(GO:0050302)
0.6 7.2 GO:0019104 DNA N-glycosylase activity(GO:0019104)
0.6 1.8 GO:0036381 pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381)
0.6 4.5 GO:0010011 auxin binding(GO:0010011)
0.6 1.7 GO:0015185 gamma-aminobutyric acid transmembrane transporter activity(GO:0015185)
0.6 2.8 GO:0035620 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.5 2.7 GO:0008430 selenium binding(GO:0008430)
0.5 4.4 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.5 5.4 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.5 2.1 GO:0047215 indole-3-acetate beta-glucosyltransferase activity(GO:0047215)
0.5 6.8 GO:0046556 alpha-L-arabinofuranosidase activity(GO:0046556)
0.5 5.2 GO:0002094 polyprenyltransferase activity(GO:0002094)
0.5 3.0 GO:0052655 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.5 5.5 GO:0070568 guanylyltransferase activity(GO:0070568)
0.5 30.6 GO:0003777 microtubule motor activity(GO:0003777)
0.5 1.4 GO:1990404 protein ADP-ribosylase activity(GO:1990404)
0.5 1.9 GO:0042895 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.5 3.8 GO:0000095 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.5 3.3 GO:0070905 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.5 1.4 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.5 5.1 GO:0004784 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.5 8.1 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.4 2.7 GO:0050017 L-3-cyanoalanine synthase activity(GO:0050017)
0.4 3.5 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.4 11.2 GO:0016168 chlorophyll binding(GO:0016168)
0.4 3.9 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.4 2.6 GO:0003913 DNA photolyase activity(GO:0003913)
0.4 1.7 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.4 2.9 GO:0051018 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.4 5.0 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.4 5.0 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.4 5.0 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.4 2.0 GO:0004781 sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.4 16.5 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.4 1.2 GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity(GO:0004514)
0.4 2.0 GO:0016174 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.4 4.3 GO:0047938 glucose-6-phosphate 1-epimerase activity(GO:0047938)
0.4 1.2 GO:0015292 uniporter activity(GO:0015292)
0.4 5.2 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.4 2.6 GO:0005047 signal recognition particle binding(GO:0005047)
0.4 3.0 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.4 1.1 GO:0008936 nicotinamidase activity(GO:0008936)
0.4 2.5 GO:0051184 cofactor transporter activity(GO:0051184)
0.4 2.5 GO:0043015 gamma-tubulin binding(GO:0043015)
0.3 1.0 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.3 1.7 GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity(GO:0004473)
0.3 6.9 GO:1900750 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.3 3.8 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.3 6.4 GO:0015248 sterol transporter activity(GO:0015248)
0.3 3.6 GO:0051537 2 iron, 2 sulfur cluster binding(GO:0051537)
0.3 1.6 GO:0045543 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
0.3 4.2 GO:0070567 cytidylyltransferase activity(GO:0070567)
0.3 1.6 GO:0010313 phytochrome binding(GO:0010313)
0.3 2.1 GO:0032977 membrane insertase activity(GO:0032977)
0.3 0.6 GO:0051753 beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753)
0.3 2.9 GO:0004312 fatty acid synthase activity(GO:0004312)
0.3 2.9 GO:0008199 ferric iron binding(GO:0008199)
0.3 2.6 GO:0071617 lysophospholipid acyltransferase activity(GO:0071617)
0.3 1.4 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.3 7.5 GO:0008810 cellulase activity(GO:0008810)
0.3 6.3 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.3 1.4 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.3 2.2 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.3 8.9 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.3 1.6 GO:0004848 ureidoglycolate hydrolase activity(GO:0004848)
0.3 7.6 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.3 0.8 GO:1990883 rRNA cytidine N-acetyltransferase activity(GO:1990883)
0.3 0.8 GO:0050377 dTDP-glucose 4,6-dehydratase activity(GO:0008460) UDP-L-rhamnose synthase activity(GO:0010280) UDP-glucose 4,6-dehydratase activity(GO:0050377)
0.3 3.6 GO:0045551 cinnamyl-alcohol dehydrogenase activity(GO:0045551)
0.3 1.8 GO:0004849 uridine kinase activity(GO:0004849)
0.3 1.0 GO:0019825 oxygen binding(GO:0019825)
0.2 1.0 GO:0004820 glycine-tRNA ligase activity(GO:0004820)
0.2 0.7 GO:0015026 coreceptor activity(GO:0015026)
0.2 1.9 GO:0043539 protein serine/threonine kinase activator activity(GO:0043539)
0.2 15.2 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.2 2.8 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.2 0.7 GO:0003861 3-isopropylmalate dehydratase activity(GO:0003861)
0.2 0.9 GO:0045181 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.2 2.8 GO:0004017 adenylate kinase activity(GO:0004017)
0.2 0.7 GO:0004071 aspartate-ammonia ligase activity(GO:0004071)
0.2 9.1 GO:0016759 cellulose synthase activity(GO:0016759)
0.2 0.9 GO:0000035 acyl binding(GO:0000035)
0.2 11.2 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.2 2.8 GO:0009927 histidine phosphotransfer kinase activity(GO:0009927)
0.2 6.2 GO:0008266 poly(U) RNA binding(GO:0008266)
0.2 2.1 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.2 1.2 GO:0004126 cytidine deaminase activity(GO:0004126)
0.2 0.6 GO:0016842 amidine-lyase activity(GO:0016842)
0.2 12.9 GO:0004650 polygalacturonase activity(GO:0004650)
0.2 0.8 GO:0017057 6-phosphogluconolactonase activity(GO:0017057)
0.2 0.9 GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor(GO:0016653)
0.2 3.0 GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485)
0.2 2.3 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.2 0.7 GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018)
0.2 0.5 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.2 3.4 GO:0008146 sulfotransferase activity(GO:0008146)
0.2 3.2 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.2 1.2 GO:0016248 ion channel inhibitor activity(GO:0008200) channel inhibitor activity(GO:0016248) sodium channel regulator activity(GO:0017080) sodium channel inhibitor activity(GO:0019871)
0.2 7.4 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.2 0.5 GO:0004046 aminoacylase activity(GO:0004046)
0.2 1.4 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.1 2.5 GO:0008420 CTD phosphatase activity(GO:0008420)
0.1 2.1 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.1 1.7 GO:0008061 chitin binding(GO:0008061)
0.1 1.0 GO:0015086 cadmium ion transmembrane transporter activity(GO:0015086)
0.1 1.9 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.1 0.4 GO:0051377 mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.1 2.4 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.1 2.1 GO:0008106 alcohol dehydrogenase (NADP+) activity(GO:0008106)
0.1 22.7 GO:0008134 transcription factor binding(GO:0008134)
0.1 1.0 GO:0032266 phosphatidylinositol-3-phosphate binding(GO:0032266)
0.1 2.9 GO:0010427 abscisic acid binding(GO:0010427)
0.1 1.2 GO:0016872 intramolecular lyase activity(GO:0016872)
0.1 2.1 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.1 6.8 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.1 0.7 GO:0016453 acetyl-CoA C-acetyltransferase activity(GO:0003985) C-acetyltransferase activity(GO:0016453)
0.1 0.6 GO:0016436 rRNA (uridine) methyltransferase activity(GO:0016436) rRNA (uridine-N3-)-methyltransferase activity(GO:0070042)
0.1 2.7 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)
0.1 4.2 GO:0051540 iron-sulfur cluster binding(GO:0051536) metal cluster binding(GO:0051540)
0.1 0.7 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.1 0.8 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.1 3.7 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.1 0.3 GO:0047874 dolichyldiphosphatase activity(GO:0047874)
0.1 0.3 GO:0022829 porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.1 1.7 GO:0061608 nuclear import signal receptor activity(GO:0061608)
0.1 7.8 GO:0008017 microtubule binding(GO:0008017)
0.1 5.6 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)
0.1 0.5 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.1 11.1 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.1 1.3 GO:0000822 inositol hexakisphosphate binding(GO:0000822)
0.1 1.7 GO:0004675 transmembrane receptor protein serine/threonine kinase activity(GO:0004675)
0.1 0.8 GO:0008028 monocarboxylic acid transmembrane transporter activity(GO:0008028)
0.1 2.3 GO:0004402 histone acetyltransferase activity(GO:0004402) peptide-lysine-N-acetyltransferase activity(GO:0061733)
0.1 1.8 GO:0030599 pectinesterase activity(GO:0030599)
0.1 1.2 GO:0008137 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.1 0.8 GO:0004124 cysteine synthase activity(GO:0004124)
0.1 11.4 GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981)
0.1 1.0 GO:0000210 NAD+ diphosphatase activity(GO:0000210)
0.1 6.7 GO:0003724 RNA helicase activity(GO:0003724)
0.1 0.7 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.1 0.3 GO:0015928 fucosidase activity(GO:0015928)
0.1 0.6 GO:0005452 inorganic anion exchanger activity(GO:0005452)
0.1 4.0 GO:0008320 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)
0.1 1.3 GO:0008308 voltage-gated anion channel activity(GO:0008308)
0.1 0.7 GO:1904680 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.1 0.1 GO:0042562 hormone binding(GO:0042562)
0.1 1.0 GO:0019706 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.1 3.0 GO:0003727 single-stranded RNA binding(GO:0003727)
0.1 10.0 GO:0008289 lipid binding(GO:0008289)
0.1 5.2 GO:0004601 peroxidase activity(GO:0004601)
0.1 0.9 GO:0003689 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.1 2.3 GO:0005179 hormone activity(GO:0005179)
0.1 1.6 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.1 0.9 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.1 1.9 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.1 16.8 GO:0003735 structural constituent of ribosome(GO:0003735)
0.1 2.1 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.1 0.5 GO:0004373 glycogen (starch) synthase activity(GO:0004373)
0.1 2.9 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.1 2.3 GO:0016278 lysine N-methyltransferase activity(GO:0016278) protein-lysine N-methyltransferase activity(GO:0016279)
0.1 0.8 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.1 22.9 GO:0046983 protein dimerization activity(GO:0046983)
0.0 0.2 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.0 0.2 GO:0070182 DNA polymerase binding(GO:0070182)
0.0 0.7 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.3 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.0 2.1 GO:0008408 3'-5' exonuclease activity(GO:0008408)
0.0 0.3 GO:0000254 C-4 methylsterol oxidase activity(GO:0000254)
0.0 0.2 GO:0050113 inositol oxygenase activity(GO:0050113)
0.0 7.4 GO:0043531 ADP binding(GO:0043531)
0.0 1.6 GO:0003993 acid phosphatase activity(GO:0003993)
0.0 0.3 GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127)
0.0 1.3 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.0 0.3 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.0 2.5 GO:0008757 S-adenosylmethionine-dependent methyltransferase activity(GO:0008757)
0.0 0.1 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.2 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 0.2 GO:0008970 phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.0 0.9 GO:0016410 N-acyltransferase activity(GO:0016410)
0.0 0.4 GO:0016846 carbon-sulfur lyase activity(GO:0016846)
0.0 0.1 GO:0045431 flavonol synthase activity(GO:0045431)
0.0 0.2 GO:0061505 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 1.0 GO:0051015 actin filament binding(GO:0051015)
0.0 0.1 GO:0004142 diacylglycerol cholinephosphotransferase activity(GO:0004142)
0.0 0.1 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.0 1.5 GO:0009055 electron carrier activity(GO:0009055)
0.0 0.1 GO:0004376 glycolipid mannosyltransferase activity(GO:0004376)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
5.7 45.5 PID CMYB PATHWAY C-MYB transcription factor network
3.1 12.2 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
1.3 7.7 PID HES HEY PATHWAY Notch-mediated HES/HEY network
0.9 5.2 PID AP1 PATHWAY AP-1 transcription factor network
0.4 1.3 PID TCR JNK PATHWAY JNK signaling in the CD4+ TCR pathway
0.1 0.6 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
7.6 45.5 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
2.2 6.5 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
1.0 3.1 REACTOME REGULATION OF INSULIN SECRETION Genes involved in Regulation of Insulin Secretion
0.8 3.0 REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES Genes involved in Loss of Nlp from mitotic centrosomes
0.6 1.7 REACTOME GLYCOSPHINGOLIPID METABOLISM Genes involved in Glycosphingolipid metabolism
0.5 2.0 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
0.5 1.4 REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer
0.4 1.3 REACTOME ARMS MEDIATED ACTIVATION Genes involved in ARMS-mediated activation
0.4 2.2 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.4 5.0 REACTOME DEVELOPMENTAL BIOLOGY Genes involved in Developmental Biology
0.3 2.1 REACTOME GENERIC TRANSCRIPTION PATHWAY Genes involved in Generic Transcription Pathway
0.3 0.6 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.2 1.4 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.2 0.9 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase
0.1 0.7 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.1 2.5 REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION Genes involved in Influenza Viral RNA Transcription and Replication
0.0 0.4 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production