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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G28920
Z-value: 2.55
Transcription factors associated with AT3G28920
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G28920
|
AT3G28920 | homeobox protein 34 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB34 | arTal_v1_Chr3_-_10941833_10941833 | -0.80 | 2.9e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 15.84 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 11.68 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 11.51 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 11.42 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 11.36 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 11.20 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 10.40 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 10.00 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr2_-_17648945_17649062 Show fit | 9.89 |
AT2G42380.1
AT2G42380.4 AT2G42380.3 AT2G42380.2 AT2G42380.5 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr1_+_10375754_10375754 Show fit | 9.58 |
AT1G29670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G28920
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 61.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 3.9 | 50.9 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.6 | 42.5 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.5 | 36.9 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.5 | 32.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.4 | 24.0 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 1.0 | 18.5 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 17.8 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter(GO:0045944) |
| 0.6 | 17.2 | GO:0006284 | base-excision repair(GO:0006284) |
| 0.2 | 16.8 | GO:0009741 | response to brassinosteroid(GO:0009741) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 254.7 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 95.8 | GO:0009579 | thylakoid(GO:0009579) |
| 0.3 | 78.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.5 | 76.7 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 1.3 | 56.3 | GO:0010319 | stromule(GO:0010319) |
| 1.2 | 29.9 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.0 | 26.3 | GO:0044434 | chloroplast part(GO:0044434) |
| 0.9 | 14.8 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 1.6 | 14.1 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.2 | 13.8 | GO:0005874 | microtubule(GO:0005874) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 49.5 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 1.4 | 36.1 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 1.3 | 33.3 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.5 | 30.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 1.1 | 26.3 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 22.9 | GO:0046983 | protein dimerization activity(GO:0046983) |
| 0.1 | 22.7 | GO:0008134 | transcription factor binding(GO:0008134) |
| 0.8 | 17.6 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.8 | 17.2 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.8 | 16.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 5.7 | 45.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 3.1 | 12.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 1.3 | 7.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.9 | 5.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.4 | 1.3 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
| 0.1 | 0.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 7.6 | 45.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 2.2 | 6.5 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.4 | 5.0 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 1.0 | 3.1 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.8 | 3.0 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 2.5 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.4 | 2.2 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.3 | 2.1 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.5 | 2.0 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.6 | 1.7 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |