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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G27920
Z-value: 0.55
Transcription factors associated with AT3G27920
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G27920
|
AT3G27920 | myb domain protein 0 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB0 | arTal_v1_Chr3_-_10363607_10363607 | 0.34 | 7.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_7156150_7156150 Show fit | 1.80 |
AT4G11910.1
|
STAY-GREEN-like protein |
|
| arTal_v1_Chr1_-_17438357_17438490 Show fit | 1.41 |
AT1G47510.2
AT1G47510.3 AT1G47510.1 |
inositol polyphosphate 5-phosphatase 11 |
|
| arTal_v1_Chr2_-_12149072_12149072 Show fit | 1.28 |
AT2G28400.1
|
senescence regulator (Protein of unknown function, DUF584) |
|
| arTal_v1_Chr4_+_13210230_13210230 Show fit | 1.23 |
AT4G26050.1
|
plant intracellular ras group-related LRR 8 |
|
| arTal_v1_Chr5_-_21809004_21809004 Show fit | 1.23 |
AT5G53730.1
|
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
|
| arTal_v1_Chr2_-_19315241_19315343 Show fit | 1.10 |
AT2G47000.7
AT2G47000.1 AT2G47000.2 AT2G47000.4 AT2G47000.3 |
ATP binding cassette subfamily B4 |
|
| arTal_v1_Chr4_-_386479_386479 Show fit | 1.08 |
AT4G00900.2
|
ER-type Ca2+-ATPase 2 |
|
| arTal_v1_Chr4_-_386850_386850 Show fit | 1.07 |
AT4G00900.1
|
ER-type Ca2+-ATPase 2 |
|
| arTal_v1_Chr1_+_3945584_3945584 Show fit | 1.06 |
AT1G11700.1
|
senescence regulator (Protein of unknown function, DUF584) |
|
| arTal_v1_Chr2_+_873506_873506 Show fit | 1.06 |
AT2G02990.1
|
ribonuclease 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G27920
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.5 | GO:0050691 | regulation of defense response to virus by host(GO:0050691) |
| 0.1 | 2.4 | GO:0046855 | inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545) |
| 0.1 | 2.2 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
| 0.4 | 2.1 | GO:0060919 | auxin influx(GO:0060919) |
| 0.3 | 1.9 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 0.1 | 1.9 | GO:0090630 | activation of GTPase activity(GO:0090630) |
| 0.0 | 1.4 | GO:0009644 | response to high light intensity(GO:0009644) |
| 0.0 | 1.1 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.0 | 1.1 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.1 | 1.0 | GO:0010236 | plastoquinone biosynthetic process(GO:0010236) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.1 | GO:0005686 | U2 snRNP(GO:0005686) |
| 0.2 | 0.9 | GO:0005776 | autophagosome(GO:0005776) |
| 0.1 | 0.5 | GO:0005697 | telomerase holoenzyme complex(GO:0005697) |
| 0.0 | 0.5 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
| 0.0 | 0.4 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 0.4 | GO:0032592 | integral component of mitochondrial membrane(GO:0032592) |
| 0.0 | 0.3 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
| 0.1 | 0.2 | GO:0045334 | clathrin-coated endocytic vesicle(GO:0045334) |
| 0.0 | 0.2 | GO:0043614 | multi-eIF complex(GO:0043614) |
| 0.0 | 0.2 | GO:0070552 | BRISC complex(GO:0070552) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.4 | GO:0034485 | phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485) |
| 0.1 | 2.2 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
| 0.3 | 2.1 | GO:0010328 | auxin influx transmembrane transporter activity(GO:0010328) |
| 0.0 | 1.9 | GO:0017137 | Rab GTPase binding(GO:0017137) |
| 0.1 | 1.5 | GO:0005242 | inward rectifier potassium channel activity(GO:0005242) |
| 0.2 | 1.1 | GO:0033897 | ribonuclease T2 activity(GO:0033897) |
| 0.0 | 1.1 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.0 | 1.1 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.0 | 1.0 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.0 | 0.8 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.2 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
| 0.0 | 0.2 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.1 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.1 | 0.4 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.0 | 0.4 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |