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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G27920

Z-value: 0.55

Transcription factors associated with AT3G27920

Gene Symbol Gene ID Gene Info
AT3G27920
AT3G27920 myb domain protein 0

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
MYB0arTal_v1_Chr3_-_10363607_103636070.347.6e-02Click!

Activity profile of AT3G27920 motif

Sorted Z-values of AT3G27920 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_7156150 1.80 AT4G11910.1
AT4G11910
STAY-GREEN-like protein
Chr1_-_17438357 1.41 AT1G47510.2
AT1G47510.3
AT1G47510.1
5PTASE11
inositol polyphosphate 5-phosphatase 11
Chr2_-_12149072 1.28 AT2G28400.1
AT2G28400
senescence regulator (Protein of unknown function, DUF584)
Chr4_+_13210230 1.23 AT4G26050.1
PIRL8
plant intracellular ras group-related LRR 8
Chr5_-_21809004 1.23 AT5G53730.1
AT5G53730
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr2_-_19315241 1.10 AT2G47000.7
AT2G47000.1
AT2G47000.2
AT2G47000.4
AT2G47000.3
ABCB4
ATP binding cassette subfamily B4
Chr4_-_386479 1.08 AT4G00900.2
ECA2
ER-type Ca2+-ATPase 2
Chr4_-_386850 1.07 AT4G00900.1
ECA2
ER-type Ca2+-ATPase 2
Chr1_+_3945584 1.06 AT1G11700.1
AT1G11700
senescence regulator (Protein of unknown function, DUF584)
Chr2_+_873506 1.06 AT2G02990.1
RNS1
ribonuclease 1
Chr5_+_20764096 1.03 AT5G51070.1
ERD1
Clp ATPase
Chr5_-_8547822 1.03 AT5G24870.2
AT5G24870.1
AT5G24870
RING/U-box superfamily protein
Chr3_+_18207651 1.02 AT3G49120.1
PRXCB
peroxidase CB
Chr1_-_17438159 1.02 AT1G47510.4
5PTASE11
inositol polyphosphate 5-phosphatase 11
Chr4_+_14110799 1.02 AT4G28550.1
AT4G28550.2
AT4G28550.3
AT4G28550
Ypt/Rab-GAP domain of gyp1p superfamily protein
Chr2_-_19315013 1.01 AT2G47000.5
AT2G47000.6
ABCB4
ATP binding cassette subfamily B4
Chr5_-_8547423 1.01 AT5G24870.3
AT5G24870
RING/U-box superfamily protein
Chr5_+_22090417 1.00 AT5G54400.1
AT5G54400
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_18375784 0.99 AT3G49580.3
AT3G49580.2
LSU1
response to low sulfur 1
Chr1_-_2013459 0.95 AT1G06570.1
AT1G06570.2
PDS1
4-hydroxyphenylpyruvate dioxygenase
Chr3_-_18375940 0.95 AT3G49580.1
LSU1
response to low sulfur 1
Chr3_-_7818985 0.94 AT3G22160.1
AT3G22160
VQ motif-containing protein
Chr3_+_18377409 0.92 AT3G49590.1
AT3G49590.3
AT3G49590.2
ATG13
Autophagy-related protein 13
Chr4_+_15383633 0.87 AT4G31800.2
WRKY18
WRKY DNA-binding protein 18
Chr4_+_15383197 0.84 AT4G31800.3
WRKY18
WRKY DNA-binding protein 18
Chr4_+_15382777 0.82 AT4G31800.1
WRKY18
WRKY DNA-binding protein 18
Chr4_+_10115418 0.77 AT4G18290.1
KAT2
potassium channel KAT1-like protein
Chr4_-_7553332 0.77 AT4G12910.2
AT4G12910.1
scpl20
serine carboxypeptidase-like 20
Chr4_+_10114794 0.77 AT4G18290.2
KAT2
potassium channel KAT1-like protein
Chr1_-_9848015 0.73 AT1G28190.1
AT1G28190
hypothetical protein
Chr3_-_17976774 0.73 AT3G48520.1
CYP94B3
cytochrome P450, family 94, subfamily B, polypeptide 3
Chr1_-_26335630 0.72 AT1G69920.1
GSTU12
glutathione S-transferase TAU 12
Chr5_-_2364479 0.71 AT5G07470.1
PMSR3
peptidemethionine sulfoxide reductase 3
Chr1_-_17928930 0.70 AT1G48490.4
AT1G48490.2
AT1G48490.1
AT1G48490.3
AT1G48490
Protein kinase superfamily protein
Chr5_+_1804697 0.69 AT5G05987.1
PRA1.A2
prenylated RAB acceptor 1.A2
Chr4_+_17021572 0.68 AT4G35940.2
AT4G35940.7
AT4G35940.6
AT4G35940.8
AT4G35940
hypothetical protein
Chr4_+_17021380 0.68 AT4G35940.3
AT4G35940.1
AT4G35940.5
AT4G35940.4
AT4G35940
hypothetical protein
Chr3_+_18210453 0.65 AT3G49130.1
AT3G49130
SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein
Chr5_-_25809595 0.64 AT5G64560.2
AT5G64560.1
MGT9
magnesium transporter 9
Chr3_+_1221422 0.63 AT3G04530.1
PPCK2
phosphoenolpyruvate carboxylase kinase 2
Chr5_-_24681078 0.60 AT5G61390.1
AT5G61390
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr3_-_1219683 0.60 AT3G04520.3
AT3G04520.2
AT3G04520.1
THA2
threonine aldolase 2
Chr2_+_16742896 0.59 AT2G40095.3
AT2G40095.2
AT2G40095.1
AT2G40095
Alpha/beta hydrolase related protein
Chr1_+_30138818 0.59 AT1G80120.1
AT1G80120
LURP-one-like protein (DUF567)
Chr5_+_22729182 0.57 AT5G56150.2
UBC30
ubiquitin-conjugating enzyme 30
Chr5_+_22729015 0.57 AT5G56150.1
UBC30
ubiquitin-conjugating enzyme 30
Chr2_+_15944583 0.57 AT2G38090.1
AT2G38090
Duplicated homeodomain-like superfamily protein
Chr2_-_14260739 0.55 AT2G33710.2
AT2G33710
Integrase-type DNA-binding superfamily protein
Chr2_+_114926 0.54 AT2G01190.1
PDE331
Octicosapeptide/Phox/Bem1p family protein
Chr2_-_10322423 0.54 AT2G24260.1
LRL1
LJRHL1-like 1
Chr1_-_25580194 0.54 AT1G68250.2
AT1G68250.1
AT1G68250
hypothetical protein
Chr1_+_29073840 0.54 AT1G77370.1
AT1G77370.2
AT1G77370
Glutaredoxin family protein
Chr5_+_12558154 0.52 AT5G33290.1
XGD1
xylogalacturonan deficient 1
Chr5_+_6369004 0.52 AT5G19050.1
AT5G19050
alpha/beta-Hydrolases superfamily protein
Chr2_-_14260904 0.51 AT2G33710.1
AT2G33710
Integrase-type DNA-binding superfamily protein
Chr2_-_11963440 0.50 AT2G28080.1
AT2G28080
UDP-Glycosyltransferase superfamily protein
Chr4_+_193528 0.50 AT4G00440.1
AT4G00440.4
AT4G00440.3
TRM15
GPI-anchored adhesin-like protein, putative (DUF3741)
Chr2_-_10321857 0.50 AT2G24260.2
LRL1
LJRHL1-like 1
Chr1_-_1361981 0.48 AT1G04830.3
AT1G04830.1
AT1G04830.2
AT1G04830
Ypt/Rab-GAP domain of gyp1p superfamily protein
Chr1_-_9879433 0.47 AT1G28260.2
AT1G28260.1
AT1G28260
Telomerase activating protein Est1
Chr3_-_6704312 0.45 AT3G19340.1
AT3G19340
aminopeptidase (DUF3754)
Chr4_+_194985 0.45 AT4G00440.5
TRM15
GPI-anchored adhesin-like protein, putative (DUF3741)
Chr2_-_16740486 0.43 AT2G40090.1
ATH9
ABC2 homolog 9
Chr4_+_193879 0.43 AT4G00440.2
TRM15
GPI-anchored adhesin-like protein, putative (DUF3741)
Chr1_-_20307000 0.43 AT1G54390.6
AT1G54390.1
AT1G54390.2
AT1G54390.7
AT1G54390.3
AT1G54390.4
AT1G54390.5
ING2
PHD finger protein-like protein
Chr1_+_17931390 0.42 AT1G48500.1
AT1G48500.2
JAZ4
jasmonate-zim-domain protein 4
Chr5_+_17676795 0.41 AT5G43930.1
AT5G43930.3
AT5G43930.4
AT5G43930.2
AT5G43930
Transducin family protein / WD-40 repeat family protein
Chr5_+_21337861 0.41 AT5G52580.2
AT5G52580.1
AT5G52580.3
AT5G52580
RabGAP/TBC domain-containing protein
Chr5_-_26869719 0.39 AT5G67350.1
AT5G67350
hypothetical protein
Chr2_+_10244745 0.39 AT2G24100.1
ASG1
ATP-dependent DNA helicase
Chr1_-_8839549 0.38 AT1G25220.2
AT1G25220.1
ASB1
anthranilate synthase beta subunit 1
Chr5_-_22759556 0.38 AT5G56230.1
PRA1.G2
prenylated RAB acceptor 1.G2
Chr2_-_12799441 0.37 AT2G29995.1
AT2G29995
PSY3-like protein
Chr5_-_17704005 0.36 AT5G44000.1
AT5G44000
Glutathione S-transferase family protein
Chr3_-_3360702 0.36 AT3G10730.1
SUN2
SAD1/UNC-84 domain protein 2
Chr5_+_6275895 0.36 AT5G18830.1
AT5G18830.3
AT5G18830.2
SPL7
squamosa promoter binding protein-like 7
Chr5_+_20282111 0.36 AT5G49880.1
MAD1
mitotic checkpoint family protein
Chr1_+_11672766 0.36 AT1G32360.1
AT1G32360
Zinc finger (CCCH-type) family protein
Chr3_-_12213396 0.35 AT3G30665.1
AT3G30665

Chr5_-_17486309 0.35 AT5G43520.1
AT5G43520
Cysteine/Histidine-rich C1 domain family protein
Chr5_-_2762019 0.35 AT5G08530.1
CI51
51 kDa subunit of complex I
Chr2_+_14139982 0.34 AT2G33360.2
AT2G33360
cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527)
Chr2_+_14139760 0.34 AT2G33360.1
AT2G33360
cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527)
Chr4_+_12514899 0.33 AT4G24100.2
AT4G24100.1
AT4G24100.3
AT4G24100.4
AT4G24100
Protein kinase superfamily protein
Chr1_+_17932600 0.33 AT1G48500.3
JAZ4
jasmonate-zim-domain protein 4
Chr5_-_25511456 0.33 AT5G63740.1
AT5G63740
RING/U-box superfamily protein
Chr4_-_6310910 0.32 AT4G10110.1
AT4G10110
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_+_10315010 0.31 AT3G27820.1
MDAR4
monodehydroascorbate reductase 4
Chr2_+_5753103 0.31 AT2G13800.2
AT2G13800.3
AT2G13800.1
SERK5
somatic embryogenesis receptor-like kinase 5
Chr5_+_25955374 0.31 AT5G64960.1
AT5G64960.2
CDKC2
cyclin dependent kinase group C2
Chr5_-_11329884 0.29 AT5G29975.1
AT5G29975

Chr1_-_20306697 0.29 AT1G54390.8
ING2
PHD finger protein-like protein
Chr1_+_20895582 0.29 AT1G55870.3
AT1G55870.4
AT1G55870.1
AT1G55870.2
AHG2
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr4_+_13361869 0.28 AT4G26450.2
AT4G26450.1
AT4G26450
hypothetical protein
Chr1_-_7294746 0.28 AT1G20930.1
CDKB2%3B2
cyclin-dependent kinase B2;2
Chr2_+_5753670 0.26 AT2G13800.4
SERK5
somatic embryogenesis receptor-like kinase 5
Chr1_+_28070295 0.26 AT1G74710.1
AT1G74710.2
EDS16
ADC synthase superfamily protein
Chr3_+_10162960 0.26 AT3G27470.3
AT3G27470.5
AT3G27470.1
AT3G27470.2
AT3G27470.4
AT3G27470
lysine ketoglutarate reductase trans-splicing protein (DUF707)
Chr3_+_19319223 0.25 AT3G52100.2
AT3G52100.3
AT3G52100.1
AT3G52100.4
AT3G52100
RING/FYVE/PHD-type zinc finger family protein
Chr3_-_10162259 0.24 AT3G27460.1
AT3G27460.4
AT3G27460.2
AT3G27460.5
AT3G27460.3
SGF29a
SGF29 tudor-like domain-containing protein
Chr4_-_4035311 0.22 AT4G06730.1
AT4G06730

Chr1_-_14079707 0.22 AT1G37045.1
AT1G37045

Chr1_+_22855751 0.22 AT1G61850.1
AT1G61850.2
AT1G61850
phospholipase A I-like protein
Chr1_-_11762635 0.22 AT1G32530.1
AT1G32530
RING/U-box superfamily protein
Chr1_-_19702916 0.21 AT1G52900.1
AT1G52900
Toll-Interleukin-Resistance (TIR) domain family protein
Chr2_+_12131544 0.21 AT2G28370.1
AT2G28370
Uncharacterized protein family (UPF0497)
Chr1_+_5023652 0.21 AT1G14640.2
AT1G14640
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Chr1_-_30165755 0.21 AT1G80210.2
AT1G80210.1
BRCC36A
Mov34/MPN/PAD-1 family protein
Chr5_+_3353442 0.20 AT5G10610.1
CYP81K1
cytochrome P450, family 81, subfamily K, polypeptide 1
Chr5_-_7598097 0.20 AT5G22780.2
AT5G22780.1
AT5G22780
Adaptor protein complex AP-2, alpha subunit
Chr5_+_13893602 0.20 AT5G35730.1
AT5G35730
EXS (ERD1/XPR1/SYG1) family protein
Chr5_+_7783673 0.20 AT5G23140.1
NCLPP7
nuclear-encoded CLP protease P7
Chr5_-_22383392 0.20 AT5G55150.1
AT5G55150
F-box SKIP23-like protein (DUF295)
Chr5_-_12151013 0.20 AT5G32517.1
AT5G32517

Chr1_+_5023426 0.20 AT1G14640.1
AT1G14640
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Chr4_-_12856541 0.20 AT4G25010.1
SWEET14
Nodulin MtN3 family protein
Chr1_+_9795718 0.19 AT1G28090.2
AT1G28090.1
AT1G28090.4
AT1G28090.5
AT1G28090
Polynucleotide adenylyltransferase family protein
Chr4_-_524249 0.19 AT4G01250.1
WRKY22
WRKY family transcription factor
Chr1_+_3920478 0.19 AT1G11660.1
AT1G11660.2
AT1G11660
heat shock protein 70 (Hsp 70) family protein
Chr1_+_3920656 0.19 AT1G11660.4
AT1G11660.3
AT1G11660
heat shock protein 70 (Hsp 70) family protein
Chr2_-_8505661 0.18 AT2G19700.1
AT2G19700
hypothetical protein
Chr5_-_14605310 0.18 AT5G36970.1
NHL25
NDR1/HIN1-like 25
Chr5_+_21528950 0.17 AT5G53110.1
AT5G53110
RING/U-box superfamily protein
Chr3_+_8309209 0.17 AT3G23250.1
AT3G23250.2
MYB15
myb domain protein 15
Chr5_+_7781172 0.16 AT5G23130.1
AT5G23130
Peptidoglycan-binding LysM domain-containing protein
Chr3_+_14407296 0.15 AT3G42252.1
AT3G42252

Chr4_-_6952479 0.15 AT4G11420.1
EIF3A
eukaryotic translation initiation factor 3A
Chr4_+_11090758 0.15 AT4G20650.1
AT4G20650
receptor-like kinase
Chr3_-_19486130 0.15 AT3G52530.1
AT3G52530
Protein kinase superfamily protein
Chr1_+_26964087 0.15 AT1G71695.1
AT1G71695
Peroxidase superfamily protein
Chr2_+_2829211 0.15 AT2G06917.1
AT2G06917

Chr4_+_14495960 0.14 AT4G29530.1
AT4G29530.2
AT4G29530
Pyridoxal phosphate phosphatase-related protein
Chr1_-_12897675 0.14 AT1G35210.1
AT1G35210
hypothetical protein
Chr5_+_8735944 0.14 AT5G25220.1
AT5G25220.2
KNAT3
homeobox protein knotted-1-like 3
Chr5_+_22388782 0.13 AT5G55180.2
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr3_-_19204464 0.13 AT3G51770.2
AT3G51770.1
ETO1
tetratricopeptide repeat (TPR)-containing protein
Chr1_-_23752121 0.13 AT1G64020.1
AT1G64020
Serine protease inhibitor (SERPIN) family protein
Chr5_+_22388521 0.12 AT5G55180.1
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr2_+_18466820 0.12 AT2G44800.1
AT2G44800
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_20362382 0.12 AT1G54510.4
AT1G54510.3
AT1G54510.2
AT1G54510.1
NEK1
NIMA-related serine/threonine kinase 1
Chr1_-_11108095 0.12 AT1G31120.1
KUP10
K+ uptake permease 10
Chr1_-_2040419 0.12 AT1G06660.1
JASON
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit
Chr3_+_15960323 0.12 AT3G44267.1
AT3G44267

Chr1_-_15544377 0.11 AT1G41775.1
AT1G41775

Chr5_-_11772031 0.10 AT5G31927.1
AT5G31927

Chr2_-_12130092 0.10 AT2G28360.1
AT2G28360
SIT4 phosphatase-associated family protein
Chr2_-_3773282 0.10 AT2G09953.1
AT2G09953

Chr1_-_21007855 0.10 AT1G56140.1
AT1G56140
Leucine-rich repeat transmembrane protein kinase
Chr1_+_20363393 0.09 AT1G54520.1
AT1G54520
myelin-associated oligodendrocyte basic protein
Chr2_+_5566998 0.09 AT2G13390.1
AT2G13390

Chr3_+_6136986 0.09 AT3G17920.1
AT3G17920.3
AT3G17920.2
AT3G17920
Outer arm dynein light chain 1 protein
Chr4_+_11048434 0.09 AT4G20530.1
AT4G20530
cysteine-rich repeat secretory-like protein
Chr1_+_9796153 0.08 AT1G28090.3
AT1G28090
Polynucleotide adenylyltransferase family protein
Chr4_-_761224 0.08 AT4G01760.1
AT4G01760
Cysteine/Histidine-rich C1 domain family protein
Chr5_-_22725099 0.08 AT5G56130.1
TEX1
Transducin/WD40 repeat-like superfamily protein
Chr2_-_2954722 0.08 AT2G07120.1
AT2G07120
F-box associated ubiquitination effector family protein
Chr5_+_14320578 0.08 AT5G36300.2
AT5G36300.1
AT5G36300
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_+_11051693 0.07 AT4G20540.1
AT4G20540
cysteine-rich repeat secretory-like protein
Chr4_+_11054952 0.07 AT4G20550.1
AT4G20550
cysteine-rich repeat secretory-like protein
Chr4_+_11058211 0.07 AT4G20560.1
AT4G20560
cysteine-rich repeat secretory-like protein
Chr4_+_11061470 0.07 AT4G20570.1
AT4G20570
cysteine-rich repeat secretory-like protein
Chr4_-_1694030 0.07 AT4G03790.1
AT4G03790

Chr1_+_14492062 0.07 AT1G38450.1
AT1G38450

Chr1_-_24967574 0.06 AT1G66920.1
AT1G66920.2
AT1G66920.3
AT1G66920
Protein kinase superfamily protein
Chr2_+_2832083 0.06 AT2G06920.1
AT2G06920

Chr3_-_13035440 0.06 AT3G32030.1
AT3G32030
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Chr4_-_3182340 0.06 AT4G06506.1
AT4G06506

Chr1_-_20360745 0.05 AT1G54510.5
NEK1
NIMA-related serine/threonine kinase 1
Chr1_+_19050298 0.05 AT1G51390.1
NFU5
NFU domain protein 5
Chr4_-_13359551 0.05 AT4G26440.1
WRKY34
WRKY DNA-binding protein 34
Chr1_+_15786432 0.04 AT1G42290.1
AT1G42290

Chr1_+_24782042 0.04 AT1G66440.1
AT1G66440
Cysteine/Histidine-rich C1 domain family protein
Chr2_-_13349999 0.04 AT2G31300.2
AT2G31300.1
ARPC1B
actin-related protein C1B
Chr2_-_8301717 0.04 AT2G19140.1
AT2G19140

Chr2_+_5172044 0.04 AT2G12650.1
AT2G12650

Chr5_-_12796844 0.04 AT5G34082.1
AT5G34082

Chr5_+_995095 0.04 AT5G03770.2
AT5G03770.1
AT5G03770.3
KDTA
KDO transferase A
Chr1_-_11324176 0.04 AT1G31640.1
AGL92
AGAMOUS-like 92
Chr3_-_5220274 0.04 AT3G15470.1
AT3G15470
Transducin/WD40 repeat-like superfamily protein
Chr5_-_11695374 0.04 AT5G31736.1
AT5G31736

Chr2_-_5067132 0.03 AT2G12470.1
AT2G12470

Chr5_-_17171704 0.03 AT5G42820.2
U2AF35B
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr4_+_6955534 0.03 AT4G11440.1
AT4G11440.2
AT4G11440
Mitochondrial substrate carrier family protein
Chr5_+_5568388 0.03 AT5G16930.1
AT5G16930
AAA-type ATPase family protein
Chr1_+_19484221 0.03 AT1G52320.5
AT1G52320.2
AT1G52320.1
AT1G52320
kinesin-like protein
Chr5_-_9694844 0.03 AT5G27460.1
AT5G27460
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_14615733 0.03 AT2G34670.1
AT2G34670.2
AT2G34670
benzoyl-CoA reductase subunit C, putative (DUF630 and DUF632)
Chr2_+_6435725 0.02 AT2G14940.1
AT2G14940

Chr5_-_12130279 0.02 AT5G32490.1
AT5G32490

Chr3_+_6707133 0.02 AT3G19360.1
AT3G19360.2
AT3G19360
Zinc finger (CCCH-type) family protein
Chr3_+_18169079 0.02 AT3G49020.1
AT3G49020
FBD, F-box and Leucine Rich Repeat domains containing protein
Chr3_-_15720790 0.02 AT3G43864.1
AT3G43864

Chr5_+_11832740 0.02 AT5G32179.1
AT5G32179

Chr3_-_14683410 0.02 AT3G42565.1
AT3G42565
ECA1 gametogenesis related family protein
Chr1_+_15547317 0.02 AT1G41790.1
AT1G41790

Chr5_+_21811633 0.02 AT5G53740.1
AT5G53740
hypothetical protein
Chr5_-_15740605 0.02 AT5G39310.1
EXPA24
expansin A24
Chr3_+_20593661 0.02 AT3G55520.3
AT3G55520.2
AT3G55520.1
AT3G55520
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Chr1_+_13131935 0.02 AT1G35590.1
AT1G35590

Chr3_+_6509500 0.01 AT3G18880.1
AT3G18880.2
AT3G18880
Nucleic acid-binding, OB-fold-like protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G27920

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.1 GO:0060919 auxin influx(GO:0060919)
0.3 1.9 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.3 2.5 GO:0050691 regulation of defense response to virus by host(GO:0050691)
0.2 0.7 GO:0048480 stigma development(GO:0048480)
0.1 1.0 GO:0010236 plastoquinone biosynthetic process(GO:0010236)
0.1 2.4 GO:0046855 inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545)
0.1 0.4 GO:0050000 chromosome localization(GO:0050000) protein heterooligomerization(GO:0051291) protein localization to nuclear envelope(GO:0090435)
0.1 0.6 GO:0006567 threonine catabolic process(GO:0006567)
0.1 1.0 GO:0002221 pattern recognition receptor signaling pathway(GO:0002221)
0.1 1.9 GO:0090630 activation of GTPase activity(GO:0090630)
0.1 0.3 GO:0050792 regulation of viral process(GO:0050792)
0.1 0.4 GO:0008608 attachment of spindle microtubules to kinetochore(GO:0008608)
0.1 0.2 GO:0070537 histone H2A K63-linked deubiquitination(GO:0070537)
0.1 0.5 GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:0000184)
0.1 2.2 GO:0070588 calcium ion transmembrane transport(GO:0070588)
0.1 0.2 GO:0002188 translation reinitiation(GO:0002188)
0.0 0.6 GO:0015693 magnesium ion transport(GO:0015693)
0.0 0.1 GO:0017145 stem cell division(GO:0017145)
0.0 0.9 GO:0000045 autophagosome assembly(GO:0000045) autophagosome organization(GO:1905037)
0.0 0.3 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.0 0.3 GO:0060866 leaf abscission(GO:0060866)
0.0 0.7 GO:0009861 jasmonic acid and ethylene-dependent systemic resistance(GO:0009861)
0.0 0.2 GO:0046865 isoprenoid transport(GO:0046864) terpenoid transport(GO:0046865)
0.0 1.1 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.0 1.0 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.0 0.1 GO:0007142 male meiosis II(GO:0007142)
0.0 0.1 GO:0009720 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.0 0.3 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.0 1.4 GO:0009644 response to high light intensity(GO:0009644)
0.0 0.4 GO:0055070 copper ion homeostasis(GO:0055070)
0.0 0.2 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.0 0.4 GO:0046219 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.0 0.1 GO:0042357 thiamine diphosphate biosynthetic process(GO:0009229) thiamine diphosphate metabolic process(GO:0042357)
0.0 0.7 GO:0009407 toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487)
0.0 1.1 GO:0000209 protein polyubiquitination(GO:0000209)
0.0 0.7 GO:0034599 cellular response to oxidative stress(GO:0034599)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0005776 autophagosome(GO:0005776)
0.1 0.2 GO:0045334 clathrin-coated endocytic vesicle(GO:0045334)
0.1 0.5 GO:0005697 telomerase holoenzyme complex(GO:0005697)
0.0 1.1 GO:0005686 U2 snRNP(GO:0005686)
0.0 0.2 GO:0043614 multi-eIF complex(GO:0043614)
0.0 0.2 GO:0070552 BRISC complex(GO:0070552)
0.0 0.2 GO:0009840 chloroplastic endopeptidase Clp complex(GO:0009840)
0.0 0.4 GO:0072686 mitotic spindle(GO:0072686)
0.0 0.2 GO:0000124 SAGA complex(GO:0000124)
0.0 0.5 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.3 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.0 0.1 GO:0000445 transcription export complex(GO:0000346) THO complex part of transcription export complex(GO:0000445)
0.0 0.4 GO:0032592 integral component of mitochondrial membrane(GO:0032592)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 2.1 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.2 1.1 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.1 2.4 GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485)
0.1 0.7 GO:0033744 L-methionine:thioredoxin-disulfide S-oxidoreductase activity(GO:0033744) L-methionine-(S)-S-oxide reductase activity(GO:0036456)
0.1 0.6 GO:0004793 threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732)
0.1 0.5 GO:0070034 telomerase RNA binding(GO:0070034)
0.1 1.5 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.1 2.2 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.1 0.3 GO:0008909 isochorismate synthase activity(GO:0008909)
0.1 0.3 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
0.1 0.4 GO:0004049 anthranilate synthase activity(GO:0004049)
0.1 0.2 GO:0035615 clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)
0.1 0.5 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.1 0.3 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.0 0.6 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.4 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 0.7 GO:0035064 methylated histone binding(GO:0035064)
0.0 0.4 GO:0043495 protein anchor(GO:0043495)
0.0 1.9 GO:0017137 Rab GTPase binding(GO:0017137)
0.0 0.6 GO:0004675 transmembrane receptor protein serine/threonine kinase activity(GO:0004675)
0.0 0.2 GO:0047714 galactolipase activity(GO:0047714)
0.0 0.3 GO:0008137 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.6 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.0 1.1 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.0 1.0 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 1.1 GO:0004364 glutathione transferase activity(GO:0004364)
0.0 0.3 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.0 0.8 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)
0.0 0.2 GO:0051117 ATPase binding(GO:0051117)
0.0 0.1 GO:0030674 protein binding, bridging(GO:0030674)
0.0 0.6 GO:0010857 calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.0 0.2 GO:0008515 sucrose transmembrane transporter activity(GO:0008515)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.9 PID MTOR 4PATHWAY mTOR signaling pathway
0.1 0.2 SA G2 AND M PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
0.0 0.2 PID IL2 PI3K PATHWAY IL2 signaling events mediated by PI3K

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 2.1 REACTOME PPARA ACTIVATES GENE EXPRESSION Genes involved in PPARA Activates Gene Expression
0.1 0.4 REACTOME MEIOTIC SYNAPSIS Genes involved in Meiotic Synapsis
0.0 0.4 REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION Genes involved in Antigen processing: Ubiquitination & Proteasome degradation