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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G27010

Z-value: 0.47

Transcription factors associated with AT3G27010

Gene Symbol Gene ID Gene Info
AT3G27010 TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TCP20arTal_v1_Chr3_-_9958921_9958945-0.834.4e-08Click!

Activity profile of AT3G27010 motif

Sorted Z-values of AT3G27010 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_13391293 2.87 AT4G26530.2
AT4G26530.1
Aldolase superfamily protein
Chr4_+_13390754 2.70 AT4G26530.3
Aldolase superfamily protein
Chr3_-_21523375 2.30 AT3G58120.2
AT3G58120.1
Basic-leucine zipper (bZIP) transcription factor family protein
Chr2_-_17648945 2.17 AT2G42380.1
AT2G42380.4
AT2G42380.3
AT2G42380.2
AT2G42380.5
Basic-leucine zipper (bZIP) transcription factor family protein
Chr3_+_6510982 1.95 AT3G18890.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_983544 1.93 AT1G03870.1
FASCICLIN-like arabinoogalactan 9
Chr5_+_2680401 1.70 AT5G08330.1
TCP family transcription factor
Chr4_+_12870006 1.65 AT4G25050.2
AT4G25050.1
acyl carrier protein 4
Chr4_-_18428412 1.60 AT4G39710.2
AT4G39710.3
AT4G39710.1
FK506-binding protein 16-2
Chr4_+_7521257 1.59 AT4G12800.2
AT4G12800.1
photosystem I subunit l
Chr5_-_20940895 1.58 AT5G51550.1
EXORDIUM like 3
Chr4_+_9780224 1.54 AT4G17560.1
Ribosomal protein L19 family protein
Chr1_+_418726 1.52 AT1G02205.4
AT1G02205.3
AT1G02205.5
AT1G02205.1
Fatty acid hydroxylase superfamily
Chr4_-_9157133 1.50 AT4G16155.1
dihydrolipoamide dehydrogenase
Chr5_-_990630 1.50 AT5G03760.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr5_-_18371021 1.47 AT5G45340.2
AT5G45340.1
cytochrome P450, family 707, subfamily A, polypeptide 3
Chr4_+_16708552 1.40 AT4G35100.2
plasma membrane intrinsic protein 3
Chr4_+_16708361 1.40 AT4G35100.1
plasma membrane intrinsic protein 3
Chr4_-_16806830 1.37 AT4G35320.1
hypothetical protein
Chr3_-_1855063 1.33 AT3G06130.2
AT3G06130.1
Heavy metal transport/detoxification superfamily protein
Chr5_-_4430901 1.30 AT5G13730.1
sigma factor 4
Chr5_-_5310951 1.28 AT5G16250.1
transmembrane protein
Chr3_-_20806333 1.28 AT3G56060.1
Glucose-methanol-choline (GMC) oxidoreductase family protein
Chr4_-_14439723 1.27 AT4G29310.1
AT4G29310.2
DUF1005 family protein (DUF1005)
Chr1_-_1768837 1.26 AT1G05850.2
AT1G05850.1
Chitinase family protein
Chr1_+_3031046 1.22 AT1G09390.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_+_27778984 1.22 AT1G73870.1
B-box type zinc finger protein with CCT domain-containing protein
Chr5_+_24240810 1.20 AT5G60200.1
TARGET OF MONOPTEROS 6
Chr3_+_4510965 1.20 AT3G13750.1
beta galactosidase 1
Chr1_+_418416 1.18 AT1G02205.2
Fatty acid hydroxylase superfamily
Chr4_-_13406109 1.14 AT4G26555.2
AT4G26555.3
AT4G26555.1
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Chr3_-_4042075 1.14 AT3G12710.1
DNA glycosylase superfamily protein
Chr5_+_22401927 1.09 AT5G55230.1
AT5G55230.3
AT5G55230.2
microtubule-associated proteins 65-1
Chr5_+_25243405 1.07 AT5G62890.3
AT5G62890.1
Xanthine/uracil permease family protein
Chr5_+_1160569 1.05 AT5G04230.1
AT5G04230.2
phenyl alanine ammonia-lyase 3
Chr5_+_25243148 1.04 AT5G62890.2
AT5G62890.4
Xanthine/uracil permease family protein
Chr2_-_18630779 1.04 AT2G45190.1
Plant-specific transcription factor YABBY family protein
Chr3_-_4775258 1.04 AT3G14310.1
pectin methylesterase 3
Chr2_-_18630428 1.04 AT2G45190.2
Plant-specific transcription factor YABBY family protein
Chr3_+_20890235 1.03 AT3G56330.1
N2,N2-dimethylguanosine tRNA methyltransferase
Chr3_-_2137012 1.03 AT3G06770.1
AT3G06770.5
Pectin lyase-like superfamily protein
Chr1_+_564018 1.03 AT1G02640.1
beta-xylosidase 2
Chr4_-_13481870 1.02 AT4G26760.1
microtubule-associated protein 65-2
Chr3_-_2137280 1.02 AT3G06770.4
AT3G06770.3
Pectin lyase-like superfamily protein
Chr5_-_24326827 1.00 AT5G60490.1
FASCICLIN-like arabinogalactan-protein 12
Chr2_+_18785990 1.00 AT2G45590.1
Protein kinase superfamily protein
Chr5_+_7676938 0.99 AT5G22940.2
glucuronoxylan glucuronosyltransferase, putative
Chr4_-_9241384 0.97 AT4G16340.2
guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein
Chr4_-_9241629 0.97 AT4G16340.1
guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein
Chr1_+_13026206 0.96 AT1G35420.1
AT1G35420.2
AT1G35420.3
alpha/beta-Hydrolases superfamily protein
Chr3_-_1858946 0.95 AT3G06140.1
RING/U-box superfamily protein
Chr5_+_3157980 0.95 AT5G10100.2
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr5_+_7676662 0.95 AT5G22940.1
glucuronoxylan glucuronosyltransferase, putative
Chr5_-_23830520 0.93 AT5G59020.1
hepatocyte growth factor activator, putative (DUF3527)
Chr5_+_23167774 0.92 AT5G57180.1
AT5G57180.2
AT5G57180.4
AT5G57180.3
chloroplast import apparatus 2
Chr2_+_14830626 0.91 AT2G35190.1
Putative plant snare 11
Chr4_-_8188811 0.89 AT4G14200.1
Pentatricopeptide repeat (PPR) superfamily protein
Chr3_+_20547661 0.87 AT3G55420.1
hypothetical protein
Chr2_-_2843338 0.87 AT2G06925.2
AT2G06925.1
Phospholipase A2 family protein
Chr2_-_466724 0.86 AT2G01990.1
XRI1-like protein
Chr1_+_23953099 0.85 AT1G64500.1
Glutaredoxin family protein
Chr5_+_7122800 0.85 AT5G20970.1
HSP20-like chaperones superfamily protein
Chr2_-_466955 0.85 AT2G01990.2
XRI1-like protein
Chr2_-_5675995 0.84 AT2G13610.1
ABC-2 type transporter family protein
Chr1_-_4882003 0.84 AT1G14290.2
sphingoid base hydroxylase 2
Chr1_-_6959148 0.83 AT1G20070.1
hypothetical protein
Chr2_-_18013252 0.82 AT2G43360.1
Radical SAM superfamily protein
Chr1_+_20048434 0.81 AT1G53700.1
WAG 1
Chr5_+_339838 0.80 AT5G01881.1
transmembrane protein
Chr1_-_4882265 0.80 AT1G14290.1
sphingoid base hydroxylase 2
Chr5_-_22712441 0.80 AT5G56080.1
nicotianamine synthase 2
Chr2_-_15066001 0.79 AT2G35880.2
AT2G35880.1
AT2G35880.3
TPX2 (targeting protein for Xklp2) protein family
Chr3_+_3661164 0.78 AT3G11590.2
golgin family A protein
Chr4_+_550349 0.77 AT4G01330.2
AT4G01330.3
Protein kinase superfamily protein
Chr2_+_15238093 0.76 AT2G36350.1
Protein kinase superfamily protein
Chr4_-_13247926 0.76 AT4G26140.5
AT4G26140.4
AT4G26140.9
AT4G26140.8
AT4G26140.6
AT4G26140.7
AT4G26140.2
AT4G26140.3
beta-galactosidase 12
Chr3_+_3660298 0.74 AT3G11590.1
golgin family A protein
Chr2_-_19440355 0.74 AT2G47370.2
AT2G47370.1
Calcium-dependent phosphotriesterase superfamily protein
Chr4_+_550175 0.73 AT4G01330.1
Protein kinase superfamily protein
Chr4_-_12254275 0.72 AT4G23490.1
fringe-like protein (DUF604)
Chr5_+_8589457 0.70 AT5G24930.1
zinc finger CONSTANS-like protein
Chr3_-_2137641 0.70 AT3G06770.2
Pectin lyase-like superfamily protein
Chr2_+_19039024 0.70 AT2G46380.2
AT2G46380.1
extra-large G-like protein, putative (DUF3133)
Chr5_+_931762 0.69 AT5G03650.1
starch branching enzyme 2.2
Chr4_-_13460105 0.69 AT4G26690.1
PLC-like phosphodiesterase family protein
Chr2_+_18718348 0.69 AT2G45420.1
LOB domain-containing protein 18
Chr1_+_6688463 0.69 AT1G19350.4
AT1G19350.3
AT1G19350.5
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr5_-_1207679 0.69 AT5G04310.2
AT5G04310.3
Pectin lyase-like superfamily protein
Chr2_+_18490030 0.68 AT2G44830.3
Protein kinase superfamily protein
Chr5_-_6591305 0.68 AT5G19530.1
AT5G19530.2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_-_18472048 0.68 AT4G39800.1
myo-inositol-1-phosphate synthase 1
Chr5_+_19549676 0.68 AT5G48220.3
AT5G48220.4
AT5G48220.2
AT5G48220.1
Aldolase-type TIM barrel family protein
Chr4_-_18451293 0.68 AT4G39770.2
AT4G39770.1
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_+_21167565 0.68 AT1G56510.1
Disease resistance protein (TIR-NBS-LRR class)
Chr2_+_18489875 0.68 AT2G44830.1
Protein kinase superfamily protein
Chr5_+_7192239 0.67 AT5G21150.1
Argonaute family protein
Chr4_+_16993062 0.66 AT4G35880.1
AT4G35880.2
Eukaryotic aspartyl protease family protein
Chr3_-_2979389 0.66 AT3G09710.2
IQ-domain 1
Chr3_+_9049090 0.66 AT3G24780.1
Uncharacterized conserved protein UCP015417, vWA
Chr5_-_17258077 0.66 AT5G43020.1
Leucine-rich repeat protein kinase family protein
Chr5_+_26660311 0.65 AT5G66770.1
GRAS family transcription factor
Chr3_+_9358719 0.65 AT3G25700.2
AT3G25700.1
Eukaryotic aspartyl protease family protein
Chr3_-_2979784 0.65 AT3G09710.1
IQ-domain 1
Chr5_+_25881033 0.65 AT5G64740.1
cellulose synthase 6
Chr1_+_4147962 0.65 AT1G12230.2
AT1G12230.1
Aldolase superfamily protein
Chr4_-_13248213 0.65 AT4G26140.1
beta-galactosidase 12
Chr4_+_12589810 0.64 AT4G24280.1
chloroplast heat shock protein 70-1
Chr2_+_18489607 0.64 AT2G44830.2
Protein kinase superfamily protein
Chr4_-_15646844 0.64 AT4G32410.1
cellulose synthase 1
Chr4_+_12236593 0.62 AT4G23440.1
AT4G23440.2
Disease resistance protein (TIR-NBS class)
Chr2_+_2924360 0.62 AT2G07050.2
AT2G07050.1
cycloartenol synthase 1
Chr3_-_7213401 0.60 AT3G20640.2
AT3G20640.4
AT3G20640.3
AT3G20640.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_-_17427282 0.60 AT2G41770.1
transmembrane protein, putative (DUF288)
Chr1_-_966704 0.59 AT1G03830.1
AT1G03830.2
guanylate-binding family protein
Chr4_+_1249971 0.59 AT4G02800.1
GRIP/coiled-coil protein
Chr1_-_7814345 0.59 AT1G22130.1
AGAMOUS-like 104
Chr1_+_3111694 0.59 AT1G09610.1
glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
Chr3_-_10383249 0.58 AT3G27960.2
AT3G27960.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_18666691 0.58 AT3G50340.1
hypothetical protein
Chr5_+_6192327 0.58 AT5G18610.2
AT5G18610.3
AT5G18610.1
Protein kinase superfamily protein
Chr2_-_19222916 0.58 AT2G46770.1
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr5_-_2403877 0.57 AT5G07590.1
AT5G07590.2
AT5G07590.4
AT5G07590.3
Transducin/WD40 repeat-like superfamily protein
Chr2_-_9418711 0.56 AT2G22140.2
AT2G22140.1
essential meiotic endonuclease 1B
Chr5_-_1207946 0.55 AT5G04310.1
Pectin lyase-like superfamily protein
Chr1_+_6688698 0.55 AT1G19350.1
AT1G19350.6
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr3_-_11448609 0.54 AT3G29630.2
AT3G29630.1
UDP-Glycosyltransferase superfamily protein
Chr1_+_1175033 0.54 AT1G04370.1
Ethylene-responsive element binding factor 14
Chr3_+_1591115 0.54 AT3G05490.1
ralf-like 22
Chr5_+_3476820 0.53 AT5G10990.1
SAUR-like auxin-responsive protein family
Chr4_-_18173840 0.52 AT4G39000.1
glycosyl hydrolase 9B17
Chr3_+_22979848 0.52 AT3G62060.1
AT3G62060.2
Pectinacetylesterase family protein
Chr1_+_11212958 0.50 AT1G31320.1
LOB domain-containing protein 4
Chr5_+_4782909 0.50 AT5G14790.1
ARM repeat superfamily protein
Chr1_-_29084285 0.50 AT1G77390.1
CYCLIN A1;2
Chr4_+_15009471 0.50 AT4G30825.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_4208951 0.50 AT1G12370.3
AT1G12370.1
AT1G12370.2
photolyase 1
Chr3_-_15853462 0.50 AT3G44093.1

Chr1_-_4165928 0.49 AT1G12260.1
AT1G12260.2
NAC 007
Chr3_-_10382658 0.49 AT3G27960.3
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_625885 0.48 AT4G01470.1
tonoplast intrinsic protein 1;3
Chr2_-_986662 0.48 AT2G03250.1
AT2G03250.2
EXS (ERD1/XPR1/SYG1) family protein
Chr3_-_1336076 0.48 AT3G04850.1
Tesmin/TSO1-like CXC domain-containing protein
Chr5_+_25268950 0.48 AT5G62960.1
AT5G62960.2
UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein
Chr1_-_3038408 0.48 AT1G09415.1
NIM1-interacting 3
Chr3_-_4123582 0.48 AT3G12920.1
SBP (S-ribonuclease binding protein) family protein
Chr4_-_17112926 0.47 AT4G36160.3
NAC domain containing protein 76
Chr5_-_23691216 0.47 AT5G58610.8
PHD finger transcription factor
Chr5_+_3157694 0.47 AT5G10100.1
AT5G10100.3
AT5G10100.4
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr4_-_17114141 0.46 AT4G36160.1
NAC domain containing protein 76
Chr2_-_257568 0.46 AT2G01570.1
GRAS family transcription factor family protein
Chr4_-_17113486 0.46 AT4G36160.2
NAC domain containing protein 76
Chr1_+_10581735 0.46 AT1G30110.2
nudix hydrolase homolog 25
Chr1_+_10582060 0.46 AT1G30110.1
nudix hydrolase homolog 25
Chr4_-_8711526 0.45 AT4G15250.1
B-box type zinc finger protein with CCT domain-containing protein
Chr1_-_5104774 0.45 AT1G14810.2
AT1G14810.1
semialdehyde dehydrogenase family protein
Chr1_-_23013477 0.45 AT1G62290.5
AT1G62290.6
AT1G62290.1
AT1G62290.3
AT1G62290.4
AT1G62290.2
Saposin-like aspartyl protease family protein
Chr5_-_11184514 0.44 AT5G29550.1

Chr5_+_4876515 0.44 AT5G15070.4
AT5G15070.3
AT5G15070.1
AT5G15070.5
AT5G15070.2
Phosphoglycerate mutase-like family protein
Chr4_-_16576753 0.44 AT4G34740.1
GLN phosphoribosyl pyrophosphate amidotransferase 2
Chr5_+_4879115 0.44 AT5G15070.6
AT5G15070.7
Phosphoglycerate mutase-like family protein
Chr1_-_1084431 0.43 AT1G04150.1
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Chr2_-_1600833 0.43 AT2G04580.1

Chr3_-_12557495 0.43 AT3G30834.1

Chr3_-_13524114 0.43 AT3G32975.1

Chr4_+_2024445 0.43 AT4G04190.2
AT4G04190.1
AT4G04190.3
transmembrane protein
Chr1_-_4134094 0.43 AT1G12190.1
F-box and associated interaction domains-containing protein
Chr1_-_11867154 0.42 AT1G32770.1
NAC domain containing protein 12
Chr5_-_3334913 0.42 AT5G10550.1
global transcription factor group E2
Chr5_-_23691394 0.42 AT5G58610.4
AT5G58610.2
AT5G58610.3
AT5G58610.10
PHD finger transcription factor
Chr5_+_324428 0.41 AT5G01840.1
ovate family protein 1
Chr1_+_8317297 0.41 AT1G23420.2
AT1G23420.1
Plant-specific transcription factor YABBY family protein
Chr2_+_9488413 0.41 AT2G22330.2
AT2G22330.1
cytochrome P450, family 79, subfamily B, polypeptide 3
Chr4_+_1579929 0.41 AT4G03560.1
two-pore channel 1
Chr1_-_1143051 0.41 AT1G04270.2
AT1G04270.1
cytosolic ribosomal protein S15
Chr1_+_7065494 0.40 AT1G20390.1

Chr2_+_6763707 0.40 AT2G15500.1
RNA-binding protein
Chr5_-_6682054 0.40 AT5G19760.1
Mitochondrial substrate carrier family protein
Chr2_+_19679730 0.40 AT2G48120.2
AT2G48120.1
pale cress protein (PAC)
Chr5_-_4734712 0.40 AT5G14690.2
transmembrane protein
Chr4_-_17698991 0.40 AT4G37670.2
AT4G37670.1
N-acetyl-l-glutamate synthase 2
Chr3_-_17910736 0.39 AT3G48360.3
AT3G48360.1
AT3G48360.2
BTB and TAZ domain protein 2
Chr4_+_14333528 0.39 AT4G29090.1
Ribonuclease H-like superfamily protein
Chr1_-_1692179 0.39 AT1G05650.1
Pectin lyase-like superfamily protein
Chr5_-_23691053 0.39 AT5G58610.5
AT5G58610.6
AT5G58610.1
AT5G58610.7
AT5G58610.9
AT5G58610.11
PHD finger transcription factor
Chr5_+_8571956 0.39 AT5G24915.1

Chr5_+_2167120 0.39 AT5G06980.1
hypothetical protein
Chr5_+_5084524 0.39 AT5G15630.1
AT5G15630.2
AT5G15630.3
AT5G15630.4
AT5G15630.5
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Chr2_+_12119285 0.39 AT2G28355.1
low-molecular-weight cysteine-rich 5
Chr4_+_11157916 0.38 AT4G20840.1
FAD-binding Berberine family protein
Chr5_+_2167468 0.38 AT5G06980.4
AT5G06980.3
AT5G06980.5
AT5G06980.2
hypothetical protein
Chr3_-_21616174 0.38 AT3G58430.2
AT3G58430.1
MATH domain/coiled-coil protein
Chr3_+_20251812 0.38 AT3G54710.1
CDT1-like protein B
Chr1_-_28996594 0.38 AT1G77160.1
AT1G77160.2
hypothetical protein (DUF506)
Chr4_+_886580 0.37 AT4G02020.1
AT4G02020.2
AT4G02020.4
AT4G02020.3
SET domain-containing protein
Chr2_+_13515199 0.37 AT2G31780.1
RING/U-box superfamily protein
Chr2_+_10456879 0.37 AT2G24610.1
AT2G24610.2
cyclic nucleotide-gated channel 14
Chr1_+_5543119 0.37 AT1G16190.1
AT1G16190.2
Rad23 UV excision repair protein family
Chr3_+_22492811 0.37 AT3G60870.1
AT-hook motif nuclear-localized protein 18
Chr1_+_16151095 0.37 AT1G43005.1
F-box/associated interaction domain protein
Chr2_+_9516910 0.37 AT2G22426.1
hypothetical protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G27010

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.7 GO:0043447 alkane biosynthetic process(GO:0043447)
0.4 2.1 GO:0010450 inflorescence meristem growth(GO:0010450)
0.3 5.6 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.2 1.5 GO:0046345 sesquiterpenoid catabolic process(GO:0016107) apocarotenoid catabolic process(GO:0043290) abscisic acid catabolic process(GO:0046345)
0.2 0.9 GO:0015965 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.2 0.7 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.2 0.7 GO:0032196 transposition(GO:0032196)
0.2 1.1 GO:0001578 microtubule bundle formation(GO:0001578)
0.2 1.2 GO:1904961 quiescent center organization(GO:1904961)
0.2 0.8 GO:0009102 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102)
0.2 0.8 GO:0072351 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.2 3.1 GO:0048759 xylem vessel member cell differentiation(GO:0048759)
0.2 0.6 GO:0044380 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.2 1.0 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.2 0.9 GO:0071715 icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) icosanoid transport(GO:0071715) fatty acid derivative transport(GO:1901571) arachidonate transport(GO:1903963)
0.2 1.2 GO:0090057 root radial pattern formation(GO:0090057)
0.1 1.9 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1 1.7 GO:0007143 female meiotic division(GO:0007143)
0.1 1.6 GO:0046520 sphingoid biosynthetic process(GO:0046520)
0.1 0.4 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.1 0.6 GO:0009647 skotomorphogenesis(GO:0009647)
0.1 0.4 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
0.1 0.6 GO:0019745 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.1 2.8 GO:0006833 water transport(GO:0006833) fluid transport(GO:0042044)
0.1 0.4 GO:0080141 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.1 0.7 GO:0080187 floral organ senescence(GO:0080187)
0.1 0.3 GO:0042891 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891)
0.1 0.8 GO:0033206 meiotic cytokinesis(GO:0033206)
0.1 1.0 GO:0010047 fruit dehiscence(GO:0010047)
0.1 1.3 GO:0006030 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.1 0.5 GO:0009650 photoreactive repair(GO:0000719) UV protection(GO:0009650)
0.1 0.6 GO:0009052 pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.1 1.5 GO:0046685 response to arsenic-containing substance(GO:0046685)
0.1 0.9 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.1 1.9 GO:0008360 regulation of cell shape(GO:0008360)
0.1 0.3 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.1 0.5 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.1 1.7 GO:0009294 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.1 1.0 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.1 0.5 GO:0031222 arabinan catabolic process(GO:0031222)
0.1 0.4 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.1 0.7 GO:2000896 glycogen biosynthetic process(GO:0005978) amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.1 0.7 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.1 1.8 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.1 0.5 GO:0006549 isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097)
0.0 0.2 GO:1904589 regulation of protein import(GO:1904589)
0.0 0.4 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.0 1.5 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.2 GO:0080003 thalianol metabolic process(GO:0080003)
0.0 0.7 GO:0052541 plant-type cell wall cellulose metabolic process(GO:0052541)
0.0 0.1 GO:0055089 fatty acid homeostasis(GO:0055089) negative regulation of seed maturation(GO:2000692)
0.0 0.4 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)
0.0 1.8 GO:0016144 S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761)
0.0 0.8 GO:0061572 actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572)
0.0 2.5 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.0 0.4 GO:0071514 regulation of gene expression by genetic imprinting(GO:0006349) genetic imprinting(GO:0071514)
0.0 1.1 GO:0006284 base-excision repair(GO:0006284)
0.0 1.6 GO:0072596 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.0 0.4 GO:0006189 'de novo' IMP biosynthetic process(GO:0006189)
0.0 0.4 GO:0006526 arginine biosynthetic process(GO:0006526)
0.0 0.3 GO:1902101 positive regulation of mitotic nuclear division(GO:0045840) positive regulation of mitotic metaphase/anaphase transition(GO:0045842) positive regulation of mitotic sister chromatid separation(GO:1901970) positive regulation of metaphase/anaphase transition of cell cycle(GO:1902101)
0.0 1.2 GO:0010223 morphogenesis of a branching structure(GO:0001763) secondary shoot formation(GO:0010223) shoot axis formation(GO:0010346)
0.0 2.2 GO:0009627 systemic acquired resistance(GO:0009627)
0.0 0.1 GO:0090030 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.0 0.6 GO:0010152 pollen maturation(GO:0010152)
0.0 0.3 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.5 GO:0034314 Arp2/3 complex-mediated actin nucleation(GO:0034314)
0.0 0.1 GO:0048657 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.0 0.2 GO:0030308 negative regulation of cell growth(GO:0030308)
0.0 0.1 GO:0010434 nectary development(GO:0010254) bract morphogenesis(GO:0010433) bract formation(GO:0010434)
0.0 0.3 GO:0034644 cellular response to UV(GO:0034644)
0.0 0.1 GO:0051202 phytochromobilin biosynthetic process(GO:0010024) phytochromobilin metabolic process(GO:0051202)
0.0 1.1 GO:0048825 cotyledon development(GO:0048825)
0.0 0.1 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.0 0.3 GO:0046620 very long-chain fatty acid biosynthetic process(GO:0042761) regulation of organ growth(GO:0046620)
0.0 0.5 GO:0006817 phosphate ion transport(GO:0006817)
0.0 0.3 GO:0065001 polarity specification of adaxial/abaxial axis(GO:0009944) specification of axis polarity(GO:0065001)
0.0 0.4 GO:0006835 dicarboxylic acid transport(GO:0006835)
0.0 0.2 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.0 0.1 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.0 1.2 GO:0045490 pectin catabolic process(GO:0045490)
0.0 1.3 GO:0006352 DNA-templated transcription, initiation(GO:0006352)
0.0 0.4 GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) positive regulation of proteasomal protein catabolic process(GO:1901800)
0.0 0.1 GO:0055071 manganese ion homeostasis(GO:0055071)
0.0 0.3 GO:0071230 cellular response to amino acid stimulus(GO:0071230)
0.0 0.4 GO:0000028 ribosomal small subunit assembly(GO:0000028)
0.0 0.4 GO:0043622 cortical microtubule organization(GO:0043622)
0.0 0.1 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.0 0.7 GO:0000911 cytokinesis by cell plate formation(GO:0000911)
0.0 0.2 GO:0001709 cell fate determination(GO:0001709)
0.0 0.8 GO:0007018 microtubule-based movement(GO:0007018)
0.0 0.2 GO:0006265 DNA topological change(GO:0006265)
0.0 0.5 GO:0019722 calcium-mediated signaling(GO:0019722)
0.0 0.4 GO:0006289 nucleotide-excision repair(GO:0006289)
0.0 0.2 GO:0006879 cellular iron ion homeostasis(GO:0006879)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.6 GO:0009538 photosystem I reaction center(GO:0009538)
0.2 0.6 GO:0010330 cellulose synthase complex(GO:0010330)
0.1 2.7 GO:0072686 mitotic spindle(GO:0072686)
0.1 1.5 GO:0070971 endoplasmic reticulum exit site(GO:0070971)
0.1 0.4 GO:0009501 amyloplast(GO:0009501)
0.1 0.6 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.1 0.8 GO:0005884 actin filament(GO:0005884)
0.1 1.9 GO:0098807 chloroplast thylakoid membrane protein complex(GO:0098807)
0.1 0.9 GO:0031902 ER to Golgi transport vesicle membrane(GO:0012507) late endosome membrane(GO:0031902)
0.1 0.4 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.0 1.6 GO:0009543 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 0.5 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 0.4 GO:0016471 vacuolar proton-transporting V-type ATPase complex(GO:0016471)
0.0 5.2 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.0 2.1 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.6 GO:0000152 nuclear ubiquitin ligase complex(GO:0000152)
0.0 4.3 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.0 0.8 GO:0005811 lipid particle(GO:0005811)
0.0 1.3 GO:0099513 supramolecular fiber(GO:0099512) polymeric cytoskeletal fiber(GO:0099513)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.7 GO:0071771 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.5 1.6 GO:0000170 sphingosine hydroxylase activity(GO:0000170)
0.4 5.6 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.3 1.5 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.3 1.5 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.3 1.0 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.2 0.7 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.2 0.9 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.2 0.8 GO:0070283 radical SAM enzyme activity(GO:0070283)
0.2 0.8 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.2 0.9 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.2 0.4 GO:0003777 microtubule motor activity(GO:0003777)
0.2 0.7 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.2 0.7 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.2 1.3 GO:0000996 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.1 0.4 GO:0004044 amidophosphoribosyltransferase activity(GO:0004044)
0.1 0.7 GO:0016768 spermine synthase activity(GO:0016768)
0.1 2.8 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.1 0.7 GO:0035197 siRNA binding(GO:0035197)
0.1 0.4 GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity(GO:0004042)
0.1 1.7 GO:0000036 ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process(GO:0000036) ACP phosphopantetheine attachment site binding(GO:0044620) prosthetic group binding(GO:0051192)
0.1 1.5 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.1 0.6 GO:0003680 AT DNA binding(GO:0003680)
0.1 2.9 GO:0004565 beta-galactosidase activity(GO:0004565)
0.1 1.1 GO:0043733 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 1.9 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.1 0.4 GO:0070182 DNA polymerase binding(GO:0070182)
0.1 0.5 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.1 0.5 GO:0003913 DNA photolyase activity(GO:0003913)
0.1 0.4 GO:0017077 oxoglutarate:malate antiporter activity(GO:0015367) oxidative phosphorylation uncoupler activity(GO:0017077)
0.1 0.6 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.1 0.6 GO:0016744 transferase activity, transferring aldehyde or ketonic groups(GO:0016744)
0.1 1.8 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.1 0.3 GO:0042895 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.1 1.3 GO:0004568 chitinase activity(GO:0004568)
0.1 3.4 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 1.2 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.7 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.0 1.5 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 2.7 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 0.4 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.0 0.3 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.0 0.8 GO:0042300 beta-amyrin synthase activity(GO:0042300)
0.0 0.3 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.0 1.4 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.5 GO:0009044 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.0 0.5 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.2 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)
0.0 0.1 GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor(GO:0052592)
0.0 0.3 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.0 0.4 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.5 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.0 0.8 GO:0008810 cellulase activity(GO:0008810)
0.0 3.9 GO:0008017 microtubule binding(GO:0008017)
0.0 0.1 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.0 0.5 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.4 GO:0070628 proteasome binding(GO:0070628)
0.0 1.0 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 0.1 GO:0016174 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.7 GO:0005262 calcium channel activity(GO:0005262)
0.0 0.9 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.2 GO:0052381 tRNA dimethylallyltransferase activity(GO:0052381)
0.0 0.2 GO:0017136 NAD-dependent histone deacetylase activity(GO:0017136) histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) NAD-dependent protein deacetylase activity(GO:0034979)
0.0 0.9 GO:0005484 SNAP receptor activity(GO:0005484)
0.0 0.5 GO:0005179 hormone activity(GO:0005179)
0.0 0.2 GO:0061505 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 0.4 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.0 2.5 GO:0008134 transcription factor binding(GO:0008134)
0.0 0.0 GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity(GO:0046537)
0.0 0.8 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.1 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 1.5 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.4 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)
0.0 0.4 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 0.3 GO:0005200 structural constituent of cytoskeleton(GO:0005200)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.7 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
0.1 0.2 PID UPA UPAR PATHWAY Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.8 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.1 2.7 REACTOME DEVELOPMENTAL BIOLOGY Genes involved in Developmental Biology
0.1 0.2 REACTOME DOWNSTREAM SIGNAL TRANSDUCTION Genes involved in Downstream signal transduction
0.0 0.4 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex