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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G27010
Z-value: 0.47
Transcription factors associated with AT3G27010
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G27010
|
AT3G27010 | TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TCP20 | arTal_v1_Chr3_-_9958921_9958945 | -0.83 | 4.4e-08 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 2.87 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 2.70 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 2.30 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr2_-_17648945_17649062 Show fit | 2.17 |
AT2G42380.1
AT2G42380.4 AT2G42380.3 AT2G42380.2 AT2G42380.5 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr3_+_6510982_6510982 Show fit | 1.95 |
AT3G18890.1
|
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr1_-_983544_983544 Show fit | 1.93 |
AT1G03870.1
|
FASCICLIN-like arabinoogalactan 9 |
|
| arTal_v1_Chr5_+_2680401_2680401 Show fit | 1.70 |
AT5G08330.1
|
TCP family transcription factor |
|
| arTal_v1_Chr4_+_12870006_12870008 Show fit | 1.65 |
AT4G25050.2
AT4G25050.1 |
acyl carrier protein 4 |
|
| arTal_v1_Chr4_-_18428412_18428578 Show fit | 1.60 |
AT4G39710.2
AT4G39710.3 AT4G39710.1 |
FK506-binding protein 16-2 |
|
| arTal_v1_Chr4_+_7521257_7521322 Show fit | 1.59 |
AT4G12800.2
AT4G12800.1 |
photosystem I subunit l |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G27010
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 5.6 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.2 | 3.1 | GO:0048759 | xylem vessel member cell differentiation(GO:0048759) |
| 0.1 | 2.8 | GO:0006833 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.5 | 2.7 | GO:0043447 | alkane biosynthetic process(GO:0043447) |
| 0.0 | 2.5 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.0 | 2.2 | GO:0009627 | systemic acquired resistance(GO:0009627) |
| 0.4 | 2.1 | GO:0010450 | inflorescence meristem growth(GO:0010450) |
| 0.1 | 1.9 | GO:0010413 | glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417) |
| 0.1 | 1.9 | GO:0008360 | regulation of cell shape(GO:0008360) |
| 0.1 | 1.8 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 4.3 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.1 | 2.7 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 2.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 1.9 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.2 | 1.6 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.0 | 1.6 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 1.5 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
| 0.0 | 1.3 | GO:0099513 | supramolecular fiber(GO:0099512) polymeric cytoskeletal fiber(GO:0099513) |
| 0.1 | 0.9 | GO:0031902 | ER to Golgi transport vesicle membrane(GO:0012507) late endosome membrane(GO:0031902) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 5.6 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 3.9 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.1 | 3.4 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 2.9 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 2.8 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.9 | 2.7 | GO:0071771 | octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465) |
| 0.0 | 2.7 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.0 | 2.5 | GO:0008134 | transcription factor binding(GO:0008134) |
| 0.1 | 1.9 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 0.1 | 1.8 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 2.7 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.2 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.7 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.1 | 0.8 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.4 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 0.2 | REACTOME DOWNSTREAM SIGNAL TRANSDUCTION | Genes involved in Downstream signal transduction |