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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G26790
Z-value: 4.89
Transcription factors associated with AT3G26790
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G26790
|
AT3G26790 | AP2/B3-like transcriptional factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| FUS3 | arTal_v1_Chr3_-_9856212_9856212 | -0.15 | 4.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 23.98 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 18.57 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 17.13 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 17.04 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr3_-_4008018_4008018 Show fit | 16.61 |
AT3G12610.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 16.27 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr5_+_3644547_3644547 Show fit | 15.58 |
AT5G11420.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 15.43 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
|
| arTal_v1_Chr5_+_21009347_21009347 Show fit | 14.53 |
AT5G51720.1
|
2 iron, 2 sulfur cluster binding protein |
|
| arTal_v1_Chr1_-_25049424_25049424 Show fit | 14.15 |
AT1G67090.2
|
ribulose bisphosphate carboxylase small chain 1A |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G26790
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 54.7 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.3 | 46.4 | GO:0015979 | photosynthesis(GO:0015979) |
| 2.4 | 46.1 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.5 | 30.8 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.3 | 30.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 25.1 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 1.1 | 24.3 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 1.5 | 22.6 | GO:0010497 | plasmodesmata-mediated intercellular transport(GO:0010497) |
| 3.7 | 22.0 | GO:0043447 | alkane biosynthetic process(GO:0043447) |
| 0.1 | 19.8 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 82.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.3 | 66.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.6 | 41.6 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.1 | 39.9 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.2 | 38.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 32.7 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.2 | 23.9 | GO:0005615 | extracellular space(GO:0005615) |
| 0.1 | 21.2 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.3 | 19.4 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
| 0.1 | 14.8 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 41.6 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.5 | 36.8 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 4.7 | 28.3 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 2.1 | 27.4 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 1.3 | 26.4 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.9 | 23.4 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.9 | 22.8 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 7.3 | 22.0 | GO:0071771 | octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465) |
| 1.0 | 20.8 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 1.7 | 20.0 | GO:0103075 | indole-3-pyruvate monooxygenase activity(GO:0103075) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 5.5 | 22.0 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.5 | 4.9 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 1.1 | 4.3 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.4 | 3.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.3 | 1.6 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.3 | 1.5 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.1 | 1.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.5 | 1.0 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 22.0 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.6 | 7.8 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 1.4 | 4.3 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 1.2 | 3.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.6 | 2.8 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.2 | 1.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.3 | 1.6 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.2 | 1.2 | REACTOME G1 PHASE | Genes involved in G1 Phase |