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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G26620
Z-value: 0.82
Transcription factors associated with AT3G26620
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G26620
|
AT3G26620 | LOB domain-containing protein 23 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LBD23 | arTal_v1_Chr3_+_9790628_9790628 | 0.29 | 1.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 3.19 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 3.18 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr4_-_9368852_9368852 Show fit | 2.96 |
AT4G16640.1
|
Matrixin family protein |
|
| arTal_v1_Chr4_+_17597110_17597110 Show fit | 2.78 |
AT4G37430.1
|
cytochrome P450, family 91, subfamily A, polypeptide 2 |
|
| arTal_v1_Chr1_+_5822309_5822309 Show fit | 2.76 |
AT1G17030.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_26857086_26857086 Show fit | 2.72 |
AT5G67310.1
|
cytochrome P450, family 81, subfamily G, polypeptide 1 |
|
| arTal_v1_Chr2_-_14541617_14541617 Show fit | 2.62 |
AT2G34500.1
|
cytochrome P450, family 710, subfamily A, polypeptide 1 |
|
| arTal_v1_Chr1_+_1469541_1469541 Show fit | 2.56 |
AT1G05100.1
|
mitogen-activated protein kinase kinase kinase 18 |
|
| arTal_v1_Chr1_+_24763941_24763941 Show fit | 2.54 |
AT1G66390.1
|
myb domain protein 90 |
|
| arTal_v1_Chr4_+_10398857_10398857 Show fit | 2.41 |
AT4G18980.1
|
AtS40-3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G26620
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.1 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 6.1 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.0 | 5.0 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.1 | 3.2 | GO:0009566 | fertilization(GO:0009566) double fertilization forming a zygote and endosperm(GO:0009567) |
| 0.0 | 2.7 | GO:0042594 | response to starvation(GO:0042594) |
| 0.6 | 2.6 | GO:1902457 | negative regulation of stomatal opening(GO:1902457) |
| 0.1 | 2.6 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.1 | 2.4 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
| 0.0 | 2.4 | GO:0010029 | regulation of seed germination(GO:0010029) |
| 0.0 | 2.3 | GO:0009860 | pollen tube growth(GO:0009860) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 12.9 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.2 | 3.2 | GO:0000786 | nucleosome(GO:0000786) |
| 0.1 | 2.4 | GO:0031970 | organelle envelope lumen(GO:0031970) |
| 0.0 | 2.1 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 1.5 | GO:0030427 | site of polarized growth(GO:0030427) |
| 0.0 | 1.5 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 1.2 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.2 | 1.0 | GO:0034098 | VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098) |
| 0.1 | 1.0 | GO:0070062 | extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561) |
| 0.0 | 0.9 | GO:0045239 | tricarboxylic acid cycle enzyme complex(GO:0045239) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.9 | GO:0044212 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.0 | 5.4 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.0 | 4.3 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.0 | 4.0 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
| 0.0 | 4.0 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.2 | 3.4 | GO:0015248 | sterol transporter activity(GO:0015248) |
| 0.0 | 2.7 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.9 | 2.6 | GO:0000249 | C-22 sterol desaturase activity(GO:0000249) |
| 0.2 | 2.6 | GO:0004709 | MAP kinase kinase kinase activity(GO:0004709) |
| 0.2 | 2.4 | GO:0004806 | triglyceride lipase activity(GO:0004806) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.0 | 0.3 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.0 | 0.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |