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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G24520
Z-value: 1.16
Transcription factors associated with AT3G24520
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G24520
|
AT3G24520 | heat shock transcription factor C1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HSFC1 | arTal_v1_Chr3_+_8941066_8941066 | 0.10 | 6.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 4.60 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr1_+_2984829_2984829 Show fit | 4.51 |
AT1G09240.1
|
nicotianamine synthase 3 |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 4.47 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 4.36 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr3_+_19239305_19239412 Show fit | 4.08 |
AT3G51860.1
AT3G51860.2 |
cation exchanger 3 |
|
| arTal_v1_Chr3_+_17724400_17724400 Show fit | 4.07 |
AT3G48020.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_18646606_18646606 Show fit | 3.88 |
AT2G45220.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr3_+_6089381_6089381 Show fit | 3.80 |
AT3G17790.1
|
purple acid phosphatase 17 |
|
| arTal_v1_Chr1_-_4571229_4571229 Show fit | 3.63 |
AT1G13340.1
|
Regulator of Vps4 activity in the MVB pathway protein |
|
| arTal_v1_Chr5_+_5995479_5995479 Show fit | 3.58 |
AT5G18130.2
|
transmembrane protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G24520
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 31.3 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 1.0 | 16.6 | GO:0055062 | phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506) |
| 0.3 | 11.5 | GO:0006986 | response to unfolded protein(GO:0006986) |
| 0.1 | 8.8 | GO:0009867 | jasmonic acid mediated signaling pathway(GO:0009867) |
| 0.3 | 7.8 | GO:0030091 | protein repair(GO:0030091) |
| 1.1 | 7.7 | GO:0006597 | spermine biosynthetic process(GO:0006597) |
| 0.2 | 6.6 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.7 | 6.2 | GO:0010230 | alternative respiration(GO:0010230) |
| 0.1 | 6.1 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.3 | 5.9 | GO:0002238 | response to molecule of fungal origin(GO:0002238) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 14.4 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.0 | 9.1 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.1 | 8.5 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.1 | 8.0 | GO:0043657 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.1 | 7.0 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.2 | 6.0 | GO:0008287 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
| 0.8 | 4.8 | GO:0034098 | VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098) |
| 0.0 | 4.5 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.2 | 4.4 | GO:0009986 | cell surface(GO:0009986) |
| 0.2 | 4.1 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 16.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 12.2 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.0 | 12.1 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.4 | 11.9 | GO:0051787 | misfolded protein binding(GO:0051787) |
| 0.8 | 7.9 | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity(GO:0008113) |
| 0.0 | 7.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 1.5 | 7.7 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.1 | 7.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.7 | 6.6 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.0 | 6.6 | GO:0005516 | calmodulin binding(GO:0005516) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 3.2 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.8 | 2.4 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.2 | 1.6 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.3 | 1.5 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.3 | 1.5 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.2 | 1.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.3 | 0.9 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.6 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.6 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 0.4 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.4 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.5 | 2.1 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.4 | 2.1 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.3 | 1.3 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.0 | 1.0 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.1 | 0.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.9 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.3 | 0.8 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.8 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.1 | 0.7 | REACTOME HOST INTERACTIONS OF HIV FACTORS | Genes involved in Host Interactions of HIV factors |