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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G24120
Z-value: 2.99
Transcription factors associated with AT3G24120
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G24120
|
AT3G24120 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G24120 | arTal_v1_Chr3_-_8708315_8708336 | 0.88 | 5.9e-10 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 15.27 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 11.92 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 11.53 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 11.15 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 11.01 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 10.75 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 10.50 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 10.46 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr2_+_18066960_18066960 Show fit | 10.33 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 10.32 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G24120
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 145.2 | GO:0070647 | protein modification by small protein conjugation or removal(GO:0070647) |
| 0.6 | 116.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.9 | 94.4 | GO:0007568 | aging(GO:0007568) |
| 1.4 | 59.2 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.3 | 45.4 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
| 0.6 | 42.1 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 0.8 | 41.2 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.6 | 39.9 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.2 | 38.4 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
| 0.8 | 34.2 | GO:0006874 | cellular calcium ion homeostasis(GO:0006874) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 434.4 | GO:0005634 | nucleus(GO:0005634) |
| 0.1 | 234.2 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.3 | 78.8 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.8 | 56.1 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.4 | 55.2 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.3 | 51.9 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.1 | 51.6 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.6 | 41.7 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.7 | 40.6 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.6 | 34.2 | GO:0000139 | Golgi membrane(GO:0000139) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 222.0 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.3 | 106.5 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.7 | 79.5 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.1 | 69.3 | GO:0000975 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.9 | 64.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.5 | 57.8 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.5 | 54.0 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.4 | 48.1 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.9 | 47.8 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.8 | 46.4 | GO:0004364 | glutathione transferase activity(GO:0004364) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 10.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.9 | 10.1 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 1.4 | 10.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 1.2 | 7.1 | PID PLK1 PATHWAY | PLK1 signaling events |
| 1.1 | 5.7 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 1.6 | 4.9 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.8 | 3.9 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.8 | 2.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.7 | 2.2 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.3 | 2.0 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.5 | 20.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 1.8 | 19.5 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.4 | 12.6 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 1.8 | 10.9 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 2.1 | 10.4 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 1.3 | 8.0 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 6.7 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 1.6 | 6.5 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 1.6 | 6.3 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 1.0 | 5.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |