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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G23220
Z-value: 0.86
Transcription factors associated with AT3G23220
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G23220
|
AT3G23220 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ESE1 | arTal_v1_Chr3_+_8287942_8287942 | 0.26 | 1.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_18634546_18634546 Show fit | 2.41 |
AT3G50260.1
|
cooperatively regulated by ethylene and jasmonate 1 |
|
| arTal_v1_Chr4_-_14820595_14820595 Show fit | 2.35 |
AT4G30270.1
|
xyloglucan endotransglucosylase/hydrolase 24 |
|
| arTal_v1_Chr1_-_5645443_5645443 Show fit | 2.28 |
AT1G16510.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr5_+_7138762_7138762 Show fit | 2.15 |
AT5G21020.2
|
transmembrane protein |
|
| arTal_v1_Chr1_+_20876440_20876440 Show fit | 2.07 |
AT1G55850.1
|
cellulose synthase like E1 |
|
| arTal_v1_Chr1_+_8164959_8164959 Show fit | 2.06 |
AT1G23040.3
AT1G23040.2 |
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr1_+_6100964_6101015 Show fit | 2.04 |
AT1G17745.1
AT1G17745.2 |
D-3-phosphoglycerate dehydrogenase |
|
| arTal_v1_Chr1_-_27755297_27755297 Show fit | 1.98 |
AT1G73810.1
|
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
|
| arTal_v1_Chr4_+_17440177_17440177 Show fit | 1.98 |
AT4G36990.1
|
heat shock factor 4 |
|
| arTal_v1_Chr1_+_8164782_8164782 Show fit | 1.95 |
AT1G23040.1
|
hydroxyproline-rich glycoprotein family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G23220
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.9 | GO:0009414 | response to water deprivation(GO:0009414) |
| 0.0 | 7.2 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
| 0.1 | 3.8 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.0 | 3.7 | GO:0009741 | response to brassinosteroid(GO:0009741) |
| 0.3 | 3.1 | GO:0031204 | posttranslational protein targeting to membrane, translocation(GO:0031204) |
| 0.2 | 2.9 | GO:0006075 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 0.4 | 2.7 | GO:1900367 | positive regulation of defense response to insect(GO:1900367) |
| 0.0 | 2.4 | GO:0010941 | regulation of cell death(GO:0010941) |
| 0.7 | 2.0 | GO:0009211 | deoxyribonucleoside triphosphate biosynthetic process(GO:0009202) pyrimidine deoxyribonucleoside triphosphate metabolic process(GO:0009211) pyrimidine deoxyribonucleotide metabolic process(GO:0009219) pyrimidine deoxyribonucleotide biosynthetic process(GO:0009221) 2'-deoxyribonucleotide biosynthetic process(GO:0009265) deoxyribose phosphate biosynthetic process(GO:0046385) |
| 0.1 | 2.0 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.6 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 3.6 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.5 | 3.1 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.2 | 2.9 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 2.1 | GO:0043656 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 2.0 | GO:0098687 | chromosomal region(GO:0098687) |
| 0.2 | 1.3 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.2 | 1.3 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.4 | 1.2 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.1 | 1.2 | GO:0043230 | extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 4.1 | GO:0019900 | kinase binding(GO:0019900) |
| 0.0 | 3.7 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.3 | 3.1 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
| 0.2 | 2.9 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
| 0.0 | 2.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 2.4 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 2.2 | GO:0004630 | phospholipase D activity(GO:0004630) N-acylphosphatidylethanolamine-specific phospholipase D activity(GO:0070290) |
| 0.0 | 2.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.3 | 2.0 | GO:0009041 | uridylate kinase activity(GO:0009041) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.1 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 0.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.4 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.1 | 0.3 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.1 | 0.3 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.1 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |