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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G21890
Z-value: 0.99
Transcription factors associated with AT3G21890
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G21890
|
AT3G21890 | B-box type zinc finger family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BBX31 | arTal_v1_Chr3_-_7709933_7709933 | 0.56 | 2.1e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 5.98 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 5.04 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 4.68 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 4.62 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr5_+_3358787_3358787 Show fit | 4.55 |
AT5G10625.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 4.47 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 4.43 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr1_-_11668690_11668690 Show fit | 4.30 |
AT1G32350.1
AT1G32350.2 |
alternative oxidase 1D |
|
| arTal_v1_Chr2_+_12600914_12601033 Show fit | 4.27 |
AT2G29350.2
AT2G29350.1 AT2G29350.3 |
senescence-associated gene 13 |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 4.25 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G21890
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 43.5 | GO:0071453 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.1 | 41.7 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.3 | 31.9 | GO:0010260 | organ senescence(GO:0010260) |
| 0.3 | 13.8 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.3 | 13.5 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 13.3 | GO:0016311 | dephosphorylation(GO:0016311) |
| 0.2 | 13.2 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.1 | 12.4 | GO:0018209 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 2.4 | 12.1 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.9 | 11.8 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 45.7 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 24.1 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 16.6 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.2 | 10.9 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.2 | 9.4 | GO:0016592 | mediator complex(GO:0016592) |
| 0.5 | 9.3 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.4 | 8.9 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.1 | 8.9 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.1 | 8.3 | GO:0005795 | Golgi stack(GO:0005795) |
| 0.1 | 8.3 | GO:0000325 | plant-type vacuole(GO:0000325) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 39.9 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 31.3 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 30.3 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 25.8 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 18.4 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.2 | 17.8 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.3 | 14.0 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.2 | 12.4 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.8 | 12.3 | GO:0003978 | UDP-glucose 4-epimerase activity(GO:0003978) |
| 0.2 | 10.7 | GO:0036459 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.4 | 2.1 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.3 | 2.0 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.3 | 2.0 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.3 | 1.7 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.3 | 1.7 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.5 | 1.5 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.2 | 1.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.4 | 1.1 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.3 | 1.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 5.9 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.9 | 5.4 | REACTOME BILE ACID AND BILE SALT METABOLISM | Genes involved in Bile acid and bile salt metabolism |
| 0.2 | 4.8 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.4 | 2.6 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.6 | 2.4 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.5 | 1.8 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.2 | 1.3 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.1 | 1.3 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.3 | 1.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 1.0 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |