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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G20770
Z-value: 0.85
Transcription factors associated with AT3G20770
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G20770
|
AT3G20770 | Ethylene insensitive 3 family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| EIN3 | arTal_v1_Chr3_-_7263384_7263384 | 0.87 | 2.0e-09 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 4.32 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr5_+_25679425_25679432 Show fit | 4.03 |
AT5G64190.2
AT5G64190.1 |
neuronal PAS domain protein |
|
| arTal_v1_Chr1_-_11668690_11668690 Show fit | 4.03 |
AT1G32350.1
AT1G32350.2 |
alternative oxidase 1D |
|
| arTal_v1_Chr3_-_2699257_2699257 Show fit | 3.90 |
AT3G08860.2
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr3_-_2699420_2699420 Show fit | 3.78 |
AT3G08860.1
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr1_-_19698482_19698482 Show fit | 3.67 |
AT1G52890.1
|
NAC domain containing protein 19 |
|
| arTal_v1_Chr3_-_18375784_18375784 Show fit | 3.58 |
AT3G49580.3
AT3G49580.2 |
response to low sulfur 1 |
|
| arTal_v1_Chr2_-_14146471_14146555 Show fit | 3.47 |
AT2G33380.2
AT2G33380.1 |
Caleosin-related family protein |
|
| arTal_v1_Chr2_-_14541617_14541617 Show fit | 3.25 |
AT2G34500.1
|
cytochrome P450, family 710, subfamily A, polypeptide 1 |
|
| arTal_v1_Chr3_-_18375940_18375940 Show fit | 3.11 |
AT3G49580.1
|
response to low sulfur 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G20770
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 7.4 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 0.1 | 6.1 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.0 | 5.2 | GO:0009620 | response to fungus(GO:0009620) |
| 1.0 | 5.0 | GO:1902418 | (+)-abscisic acid D-glucopyranosyl ester transmembrane transport(GO:1902418) |
| 0.3 | 4.9 | GO:0009969 | xyloglucan biosynthetic process(GO:0009969) |
| 0.0 | 4.5 | GO:0016311 | dephosphorylation(GO:0016311) |
| 0.9 | 4.3 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.0 | 4.1 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.4 | 4.0 | GO:0010230 | alternative respiration(GO:0010230) |
| 0.2 | 3.7 | GO:0010105 | negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.7 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.2 | 4.0 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 3.8 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 3.2 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 2.7 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 2.5 | GO:0016592 | mediator complex(GO:0016592) |
| 0.0 | 2.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 2.0 | GO:0000792 | heterochromatin(GO:0000792) |
| 0.1 | 1.8 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.2 | 1.7 | GO:0017119 | Golgi transport complex(GO:0017119) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.5 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.7 | 7.7 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.0 | 5.7 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.0 | 5.6 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 5.3 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 1.0 | 5.0 | GO:1902417 | (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417) |
| 0.4 | 4.8 | GO:0008107 | galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127) |
| 0.1 | 4.3 | GO:0017137 | Rab GTPase binding(GO:0017137) |
| 0.0 | 4.3 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
| 0.6 | 4.2 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.5 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.2 | 0.5 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.3 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.2 | 2.3 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.5 | 2.2 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.3 | 0.8 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
| 0.2 | 0.5 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.2 | 0.5 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.1 | 0.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |