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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G20770

Z-value: 0.85

Transcription factors associated with AT3G20770

Gene Symbol Gene ID Gene Info
AT3G20770 Ethylene insensitive 3 family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
EIN3arTal_v1_Chr3_-_7263384_72633840.872.0e-09Click!

Activity profile of AT3G20770 motif

Sorted Z-values of AT3G20770 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_+_5234457 4.32 AT3G15500.1
NAC domain containing protein 3
Chr5_+_25679425 4.03 AT5G64190.2
AT5G64190.1
neuronal PAS domain protein
Chr1_-_11668690 4.03 AT1G32350.1
AT1G32350.2
alternative oxidase 1D
Chr3_-_2699257 3.90 AT3G08860.2
PYRIMIDINE 4
Chr3_-_2699420 3.78 AT3G08860.1
PYRIMIDINE 4
Chr1_-_19698482 3.67 AT1G52890.1
NAC domain containing protein 19
Chr3_-_18375784 3.58 AT3G49580.3
AT3G49580.2
response to low sulfur 1
Chr2_-_14146471 3.47 AT2G33380.2
AT2G33380.1
Caleosin-related family protein
Chr2_-_14541617 3.25 AT2G34500.1
cytochrome P450, family 710, subfamily A, polypeptide 1
Chr3_-_18375940 3.11 AT3G49580.1
response to low sulfur 1
Chr3_-_1063103 3.08 AT3G04070.2
AT3G04070.1
NAC domain containing protein 47
Chr4_+_18409846 2.94 AT4G39670.1
Glycolipid transfer protein (GLTP) family protein
Chr1_-_9848015 2.84 AT1G28190.1
hypothetical protein
Chr3_+_22216540 2.84 AT3G60140.2
AT3G60140.1
Glycosyl hydrolase superfamily protein
Chr4_+_13653579 2.83 AT4G27260.1
Auxin-responsive GH3 family protein
Chr5_-_2079005 2.79 AT5G06720.1
peroxidase 2
Chr1_-_7534927 2.71 AT1G21520.1
hypothetical protein
Chr3_-_19564195 2.67 AT3G52780.2
Purple acid phosphatases superfamily protein
Chr3_-_19564350 2.62 AT3G52780.1
Purple acid phosphatases superfamily protein
Chr1_+_23072222 2.62 AT1G62370.1
RING/U-box superfamily protein
Chr5_-_5862462 2.60 AT5G17760.2
AT5G17760.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr2_-_6710856 2.59 AT2G15390.1
fucosyltransferase 4
Chr2_-_6711156 2.56 AT2G15390.2
fucosyltransferase 4
Chr1_+_9748506 2.47 AT1G27980.1
dihydrosphingosine phosphate lyase
Chr2_+_6893949 2.46 AT2G15830.1
hypothetical protein
Chr1_-_17706460 2.45 AT1G48000.1
myb domain protein 112
Chr3_+_10694444 2.40 AT3G28540.2
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_4271730 2.33 AT5G13330.1
related to AP2 6l
Chr1_-_24362054 2.31 AT1G65520.1
delta(3), delta(2)-enoyl CoA isomerase 1
Chr3_-_18373147 2.29 AT3G49570.1
response to low sulfur 3
Chr3_+_10694175 2.27 AT3G28540.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_12917070 2.24 AT1G35230.1
arabinogalactan protein 5
Chr1_-_19690589 2.23 AT1G52880.1
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr1_-_28991385 2.22 AT1G77145.2
AT1G77145.1
transmembrane protein, putative (DUF506)
Chr2_-_19412328 2.18 AT2G47270.1
transcription factor UPBEAT protein
Chr4_+_12741032 2.18 AT4G24690.1
ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein
Chr3_+_20849762 2.14 AT3G56200.1
Transmembrane amino acid transporter family protein
Chr5_-_8441364 2.14 AT5G24655.1
response to low sulfur 4
Chr2_+_11860218 2.08 AT2G27830.1
hypothetical protein
Chr5_+_2435983 2.08 AT5G07680.2
NAC domain containing protein 80
Chr1_-_24001593 2.05 AT1G64610.2
Transducin/WD40 repeat-like superfamily protein
Chr5_+_6424779 1.97 AT5G19140.3
aluminum induced protein with YGL and LRDR motifs
Chr1_-_24002058 1.97 AT1G64610.1
Transducin/WD40 repeat-like superfamily protein
Chr1_+_8544248 1.96 AT1G24148.1
AT1G24148.2
hypothetical protein
Chr1_-_18680300 1.95 AT1G50420.1
scarecrow-like 3
Chr5_+_2435795 1.93 AT5G07680.1
NAC domain containing protein 80
Chr5_+_6423153 1.85 AT5G19140.2
AT5G19140.1
aluminum induced protein with YGL and LRDR motifs
Chr1_-_17285749 1.84 AT1G47128.1
Granulin repeat cysteine protease family protein
Chr2_+_7267722 1.84 AT2G16740.1
ubiquitin-conjugating enzyme 29
Chr5_+_16324310 1.83 AT5G40780.2
AT5G40780.3
lysine histidine transporter 1
Chr1_+_20210772 1.75 AT1G54130.1
RELA/SPOT homolog 3
Chr5_-_20191604 1.73 AT5G49690.1
UDP-Glycosyltransferase superfamily protein
Chr5_+_9974411 1.72 AT5G27940.1
WPP domain protein 3
Chr5_+_1444638 1.69 AT5G04930.1
aminophospholipid ATPase 1
Chr3_-_184403 1.69 AT3G01470.1
homeobox 1
Chr1_+_1882907 1.68 AT1G06160.1
octadecanoid-responsive AP2/ERF 59
Chr2_-_11685342 1.67 AT2G27310.1
F-box family protein
Chr2_-_6304394 1.66 AT2G14720.2
AT2G14720.1
vacuolar sorting receptor 4
Chr5_+_2154746 1.65 AT5G06960.1
AT5G06960.2
AT5G06960.3
OCS-element binding factor 5
Chr5_+_6264245 1.65 AT5G18780.4
AT5G18780.3
AT5G18780.1
AT5G18780.2
F-box/RNI-like superfamily protein
Chr4_-_18394816 1.64 AT4G39610.1
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr4_-_1203380 1.62 AT4G02715.1
AT4G02715.2
flocculation FLO11-like protein
Chr4_-_13729002 1.61 AT4G27450.1
aluminum induced protein with YGL and LRDR motifs
Chr5_-_8797349 1.60 AT5G25350.1
EIN3-binding F box protein 2
Chr2_+_15514923 1.59 AT2G36950.1
Heavy metal transport/detoxification superfamily protein
Chr3_+_20882729 1.54 AT3G56310.1
AT3G56310.2
Melibiase family protein
Chr5_-_24702761 1.53 AT5G61430.2
AT5G61430.1
NAC domain containing protein 100
Chr5_+_448092 1.52 AT5G02230.1
AT5G02230.3
AT5G02230.2
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_3592580 1.52 AT1G10770.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr1_-_27407540 1.52 AT1G72830.2
nuclear factor Y, subunit A3
Chr4_-_17492771 1.52 AT4G37140.2
AT4G37140.1
alpha/beta-Hydrolases superfamily protein
Chr1_-_29780876 1.49 AT1G79160.1
filamentous hemagglutinin transporter
Chr3_+_21714911 1.47 AT3G58710.2
AT3G58710.1
WRKY DNA-binding protein 69
Chr1_-_9337759 1.47 AT1G26930.2
Galactose oxidase/kelch repeat superfamily protein
Chr1_+_10029083 1.47 AT1G28520.3
AT1G28520.1
AT1G28520.2
AT1G28520.5
AT1G28520.4
vascular plant one zinc finger protein
Chr1_+_11881311 1.46 AT1G32810.2
RING/FYVE/PHD zinc finger superfamily protein
Chr1_+_11827359 1.46 AT1G32700.1
AT1G32700.2
PLATZ transcription factor family protein
Chr4_+_8538586 1.45 AT4G14930.2
AT4G14930.1
Survival protein SurE-like phosphatase/nucleotidase
Chr1_-_10294630 1.44 AT1G29400.2
AT1G29400.3
MEI2-like protein 5
Chr5_-_4071249 1.43 AT5G12890.1
UDP-Glycosyltransferase superfamily protein
Chr1_-_27407968 1.42 AT1G72830.3
nuclear factor Y, subunit A3
Chr3_+_8295617 1.42 AT3G23240.1
ethylene response factor 1
Chr1_-_9337938 1.41 AT1G26930.1
Galactose oxidase/kelch repeat superfamily protein
Chr2_-_19370478 1.41 AT2G47180.1
galactinol synthase 1
Chr5_+_6127773 1.41 AT5G18470.1
Curculin-like (mannose-binding) lectin family protein
Chr2_-_12632538 1.40 AT2G29490.1
glutathione S-transferase TAU 1
Chr5_-_25804980 1.40 AT5G64550.1
loricrin-like protein
Chr1_+_10650914 1.39 AT1G30260.1
galactosyltransferase family protein
Chr1_-_10294478 1.39 AT1G29400.1
MEI2-like protein 5
Chr4_-_13754812 1.39 AT4G27540.1
AT4G27540.2
prenylated RAB acceptor 1.H
Chr1_-_4892332 1.37 AT1G14330.1
Galactose oxidase/kelch repeat superfamily protein
Chr5_-_22133688 1.37 AT5G54510.1
Auxin-responsive GH3 family protein
Chr1_+_29206567 1.37 AT1G77710.1
ubiquitin-fold modifier
Chr5_-_6974962 1.37 AT5G20620.1
AT5G20620.2
ubiquitin 4
Chr5_+_16323567 1.35 AT5G40780.1
lysine histidine transporter 1
Chr1_-_27408221 1.35 AT1G72830.1
nuclear factor Y, subunit A3
Chr2_+_8094614 1.32 AT2G18680.1
transmembrane protein
Chr2_-_1392938 1.31 AT2G04135.1

Chr1_+_23199612 1.26 AT1G62660.2
AT1G62660.1
AT1G62660.3
Glycosyl hydrolases family 32 protein
Chr5_-_22759556 1.26 AT5G56230.1
prenylated RAB acceptor 1.G2
Chr4_+_14894073 1.26 AT4G30470.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_17089934 1.26 AT4G36110.1
SAUR-like auxin-responsive protein family
Chr5_+_3261149 1.24 AT5G10370.1
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein
Chr4_-_15339613 1.24 AT4G31670.1
ubiquitin-specific protease 18
Chr5_-_16149198 1.23 AT5G40370.2
AT5G40370.1
Glutaredoxin family protein
Chr3_+_1867415 1.23 AT3G06170.1
Serinc-domain containing serine and sphingolipid biosynthesis protein
Chr1_+_24442388 1.21 AT1G65730.1
YELLOW STRIPE like 7
Chr2_+_14604712 1.19 AT2G34660.3
multidrug resistance-associated protein 2
Chr2_+_14602470 1.19 AT2G34660.2
multidrug resistance-associated protein 2
Chr2_+_14602700 1.18 AT2G34660.1
multidrug resistance-associated protein 2
Chr4_-_6054454 1.18 AT4G09580.1
SNARE associated Golgi protein family
Chr3_+_3216339 1.18 AT3G10370.1
FAD-dependent oxidoreductase family protein
Chr5_-_5262840 1.17 AT5G16110.1
hypothetical protein
Chr5_-_2860558 1.17 AT5G08790.1
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr4_+_9891051 1.17 AT4G17790.1
SNARE associated Golgi protein family
Chr3_+_8254559 1.15 AT3G23150.1
AT3G23150.2
Signal transduction histidine kinase, hybrid-type, ethylene sensor
Chr5_+_3199102 1.14 AT5G10190.2
Major facilitator superfamily protein
Chr5_-_19172956 1.14 AT5G47220.1
ethylene responsive element binding factor 2
Chr4_+_2445775 1.14 AT4G04830.1
AT4G04830.2
methionine sulfoxide reductase B5
Chr4_-_16612112 1.13 AT4G34860.3
Plant neutral invertase family protein
Chr2_-_17464242 1.13 AT2G41850.1
polygalacturonase ADPG2-like protein
Chr4_-_16686818 1.13 AT4G35060.1
Heavy metal transport/detoxification superfamily protein
Chr4_-_16612907 1.13 AT4G34860.1
Plant neutral invertase family protein
Chr5_+_3198898 1.12 AT5G10190.1
Major facilitator superfamily protein
Chr4_+_7214577 1.12 AT4G12040.1
AT4G12040.2
A20/AN1-like zinc finger family protein
Chr2_+_17042623 1.12 AT2G40830.2
AT2G40830.4
AT2G40830.3
AT2G40830.1
RING-H2 finger C1A
Chr5_+_19678825 1.12 AT5G48550.2
AT5G48550.1
F-box associated ubiquitination effector family protein
Chr2_-_7972396 1.12 AT2G18350.1
homeobox protein 24
Chr2_+_18236789 1.10 AT2G44080.1
ARGOS-like protein
Chr1_+_23200591 1.09 AT1G62660.4
Glycosyl hydrolases family 32 protein
Chr2_-_5610324 1.09 AT2G13463.1
hypothetical protein
Chr3_-_10969858 1.08 AT3G28940.1
AIG2-like (avirulence induced gene) family protein
Chr1_+_20637333 1.07 AT1G55325.3
AT1G55325.4
AT1G55325.2
AT1G55325.1
RNA polymerase II transcription mediator
Chr1_-_9411368 1.07 AT1G27100.1
Actin cross-linking protein
Chr5_+_3199533 1.07 AT5G10190.3
Major facilitator superfamily protein
Chr3_+_18007098 1.06 AT3G48580.1
AT3G48580.2
AT3G48580.3
xyloglucan endotransglucosylase/hydrolase 11
Chr1_-_22649521 1.06 AT1G61380.1
S-domain-1 29
Chr1_-_13698739 1.06 AT1G36370.1
serine hydroxymethyltransferase 7
Chr2_+_15158561 1.06 AT2G36090.1
F-box family protein
Chr5_+_5990909 1.05 AT5G18120.2
AT5G18120.1
AT5G18120.3
APR-like 7
Chr3_-_11299695 1.05 AT3G29400.1
exocyst subunit exo70 family protein E1
Chr1_-_22650072 1.05 AT1G61380.2
S-domain-1 29
Chr1_+_24472873 1.04 AT1G65800.1
AT1G65800.2
receptor kinase 2
Chr5_+_24915807 1.03 AT5G62020.1
heat shock transcription factor B2A
Chr2_-_13061612 1.03 AT2G30660.2
AT2G30660.1
ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Chr3_-_21728137 1.02 AT3G58750.1
citrate synthase 2
Chr5_+_575382 1.01 AT5G02560.2
histone H2A 12
Chr3_+_8703220 1.01 AT3G24100.1
Uncharacterized protein family SERF
Chr5_-_4448675 0.99 AT5G13780.1
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr4_-_16612623 0.99 AT4G34860.2
Plant neutral invertase family protein
Chr5_+_575225 0.98 AT5G02560.1
histone H2A 12
Chr5_-_4573137 0.98 AT5G14180.4
AT5G14180.2
Myzus persicae-induced lipase 1
Chr1_-_7830275 0.98 AT1G22180.1
AT1G22180.3
AT1G22180.2
AT1G22180.4
Sec14p-like phosphatidylinositol transfer family protein
Chr4_+_17994739 0.97 AT4G38460.1
geranylgeranyl reductase
Chr5_+_17979149 0.96 AT5G44580.1
transmembrane protein
Chr4_+_16277282 0.96 AT4G33960.1
hypothetical protein
Chr2_+_8324653 0.95 AT2G19180.2
AT2G19180.1
hypothetical protein
Chr2_-_10322423 0.95 AT2G24260.1
LJRHL1-like 1
Chr4_+_10521259 0.95 AT4G19230.1
AT4G19230.2
cytochrome P450, family 707, subfamily A, polypeptide 1
Chr1_+_29650376 0.95 AT1G78870.2
AT1G78870.4
AT1G78870.1
AT1G78870.3
ubiquitin-conjugating enzyme 35
Chr1_-_4615259 0.94 AT1G13450.3
AT1G13450.1
AT1G13450.4
AT1G13450.2
Homeodomain-like superfamily protein
Chr5_+_26447642 0.94 AT5G66170.3
AT5G66170.2
AT5G66170.1
sulfurtransferase 18
Chr5_-_7022113 0.94 AT5G20730.3
AT5G20730.1
AT5G20730.2
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein
Chr3_-_17832759 0.94 AT3G48195.1
Phox (PX) domain-containing protein
Chr1_+_6450585 0.94 AT1G18710.1
myb domain protein 47
Chr4_+_14106735 0.93 AT4G28540.1
casein kinase I-like 6
Chr1_-_18521781 0.93 AT1G50020.1
tubulin alpha-6 chain
Chr3_-_21626609 0.93 AT3G58460.1
AT3G58460.2
RHOMBOID-like protein 15
Chr2_-_16119187 0.92 AT2G38500.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_-_916509 0.91 AT4G02075.2
AT4G02075.3
AT4G02075.1
RING/FYVE/PHD zinc finger superfamily protein
Chr1_+_18685769 0.91 AT1G50440.4
AT1G50440.1
AT1G50440.5
AT1G50440.2
AT1G50440.3
RING/FYVE/PHD zinc finger superfamily protein
Chr4_-_15224685 0.91 AT4G31370.1
FASCICLIN-like arabinogalactan protein 5 precursor
Chr2_+_15050677 0.90 AT2G35820.1
ureidoglycolate hydrolase
Chr5_+_23744730 0.89 AT5G58790.2
AT5G58790.1
AT5G58790.3
hypothetical protein
Chr5_+_4338231 0.89 AT5G13500.3
AT5G13500.2
Hyp O-arabinosyltransferase-like protein
Chr5_+_21483919 0.88 AT5G52990.1
SNARE-like superfamily protein
Chr2_+_15050498 0.88 AT2G35820.2
ureidoglycolate hydrolase
Chr3_+_1549667 0.88 AT3G05400.2
Major facilitator superfamily protein
Chr2_-_10321857 0.87 AT2G24260.2
LJRHL1-like 1
Chr1_-_7692459 0.86 AT1G21900.1
emp24/gp25L/p24 family/GOLD family protein
Chr3_+_9406669 0.85 AT3G25770.1
allene oxide cyclase 2
Chr1_-_20017932 0.85 AT1G53633.1
hypothetical protein
Chr3_+_1549446 0.85 AT3G05400.1
Major facilitator superfamily protein
Chr4_+_2324878 0.85 AT4G04610.1
APS reductase 1
Chr3_-_18054832 0.84 AT3G48740.1
Nodulin MtN3 family protein
Chr4_-_16037967 0.83 AT4G33240.2
AT4G33240.4
AT4G33240.3
AT4G33240.5
AT4G33240.1
AT4G33240.7
AT4G33240.6
1-phosphatidylinositol-3-phosphate 5-kinase FAB1A
Chr3_+_6772570 0.83 AT3G19520.3
AT3G19520.1
AT3G19520.4
AT3G19520.2
hypothetical protein (DUF626)
Chr1_+_11672766 0.83 AT1G32360.1
Zinc finger (CCCH-type) family protein
Chr5_-_7735566 0.83 AT5G23050.1
AT5G23050.2
acyl-activating enzyme 17
Chr5_-_21003286 0.83 AT5G51700.2
AT5G51700.1
cysteine and histidine-rich domain-containing protein RAR1
Chr5_-_6958311 0.83 AT5G20570.3
AT5G20570.2
AT5G20570.1
RING-box 1
Chr3_+_1246669 0.82 AT3G04605.1

Chr4_-_433938 0.81 AT4G01000.2
AT4G01000.1
Ubiquitin-like superfamily protein
Chr4_+_10773804 0.81 AT4G19840.1
phloem protein 2-A1
Chr1_+_2238017 0.81 AT1G07280.1
AT1G07280.2
AT1G07280.4
AT1G07280.3
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_2055576 0.81 AT3G06590.1
AT3G06590.3
AT3G06590.4
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_+_18165336 0.78 AT5G45000.1
Disease resistance protein (TIR-NBS-LRR class) family
Chr5_-_4574541 0.78 AT5G14180.3
AT5G14180.5
AT5G14180.1
Myzus persicae-induced lipase 1
Chr3_-_11132105 0.77 AT3G29160.2
AT3G29160.1
SNF1 kinase homolog 11
Chr1_-_18439115 0.77 AT1G49800.1
transmembrane protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G20770

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 7.4 GO:0010438 cellular response to sulfur starvation(GO:0010438)
1.0 3.1 GO:0045764 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
1.0 5.0 GO:1902418 (+)-abscisic acid D-glucopyranosyl ester transmembrane transport(GO:1902418)
0.9 3.5 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.9 4.3 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.8 2.3 GO:0002215 defense response to nematode(GO:0002215)
0.7 2.8 GO:0051176 positive regulation of sulfur metabolic process(GO:0051176)
0.7 2.1 GO:0032490 detection of molecule of bacterial origin(GO:0032490)
0.5 1.5 GO:0010618 aerenchyma formation(GO:0010618)
0.5 1.5 GO:0010353 response to trehalose(GO:0010353)
0.5 1.4 GO:0071569 protein ufmylation(GO:0071569)
0.5 3.2 GO:0043090 amino acid import(GO:0043090)
0.4 4.0 GO:0010230 alternative respiration(GO:0010230)
0.4 1.7 GO:0045332 phospholipid translocation(GO:0045332)
0.4 1.1 GO:0044277 cell wall modification involved in abscission(GO:0009830) cell wall disassembly(GO:0044277)
0.4 1.1 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.3 2.8 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.3 2.5 GO:0030149 sphingolipid catabolic process(GO:0030149)
0.3 1.8 GO:0015969 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.3 1.3 GO:0019419 sulfate reduction(GO:0019419)
0.3 4.9 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.2 3.2 GO:0005987 sucrose catabolic process(GO:0005987)
0.2 3.7 GO:0010105 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.2 1.0 GO:0043693 monoterpene biosynthetic process(GO:0043693)
0.2 1.0 GO:0097438 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438)
0.2 1.2 GO:0006116 NADH oxidation(GO:0006116)
0.2 2.1 GO:0048587 regulation of short-day photoperiodism, flowering(GO:0048587)
0.2 1.5 GO:0048578 positive regulation of long-day photoperiodism, flowering(GO:0048578)
0.2 1.0 GO:0046622 positive regulation of organ growth(GO:0046622)
0.2 0.5 GO:0002009 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway(GO:0009871) tissue morphogenesis(GO:0048729)
0.2 0.7 GO:0042939 glutathione transport(GO:0034635) tripeptide transport(GO:0042939)
0.2 2.2 GO:0048317 seed morphogenesis(GO:0048317)
0.2 0.7 GO:0070898 RNA polymerase III transcriptional preinitiation complex assembly(GO:0070898)
0.2 0.6 GO:0032260 response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance(GO:0032260)
0.2 2.0 GO:0070828 heterochromatin organization(GO:0070828)
0.2 2.1 GO:0010274 hydrotropism(GO:0010274)
0.2 0.6 GO:0046352 disaccharide catabolic process(GO:0046352)
0.1 0.6 GO:0035308 negative regulation of dephosphorylation(GO:0035305) negative regulation of protein dephosphorylation(GO:0035308)
0.1 1.7 GO:0009410 response to xenobiotic stimulus(GO:0009410)
0.1 6.1 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.1 0.4 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.1 0.6 GO:0010390 histone monoubiquitination(GO:0010390)
0.1 1.7 GO:0009861 jasmonic acid and ethylene-dependent systemic resistance(GO:0009861)
0.1 1.1 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.1 2.3 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.1 2.1 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.1 0.4 GO:1900363 regulation of mRNA polyadenylation(GO:1900363)
0.1 0.9 GO:0070534 protein K63-linked ubiquitination(GO:0070534)
0.1 0.4 GO:0046825 regulation of protein export from nucleus(GO:0046825)
0.1 3.2 GO:0016126 sterol biosynthetic process(GO:0016126)
0.1 1.0 GO:0032527 protein exit from endoplasmic reticulum(GO:0032527)
0.1 1.4 GO:0015770 sucrose transport(GO:0015770)
0.1 0.3 GO:0036065 fucosylation(GO:0036065)
0.1 3.3 GO:0006635 fatty acid beta-oxidation(GO:0006635)
0.1 0.3 GO:0009660 amyloplast organization(GO:0009660)
0.1 0.6 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 2.0 GO:0050826 response to freezing(GO:0050826)
0.1 0.3 GO:0033386 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.1 0.5 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.1 1.1 GO:0009938 negative regulation of gibberellic acid mediated signaling pathway(GO:0009938)
0.1 2.0 GO:0009625 response to insect(GO:0009625)
0.1 1.4 GO:0007602 phototransduction(GO:0007602) red, far-red light phototransduction(GO:0009585)
0.1 0.9 GO:0032958 inositol phosphate biosynthetic process(GO:0032958)
0.1 2.8 GO:0016145 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.1 0.3 GO:0009560 embryo sac egg cell differentiation(GO:0009560)
0.1 1.3 GO:2000031 regulation of salicylic acid mediated signaling pathway(GO:2000031)
0.1 0.6 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.1 1.3 GO:0052542 defense response by callose deposition(GO:0052542)
0.1 0.3 GO:0006307 DNA dealkylation involved in DNA repair(GO:0006307)
0.0 0.8 GO:0051026 chiasma assembly(GO:0051026)
0.0 1.8 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.0 0.3 GO:1901001 negative regulation of response to salt stress(GO:1901001)
0.0 0.6 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 0.7 GO:1902074 response to salt(GO:1902074)
0.0 1.4 GO:0006012 galactose metabolic process(GO:0006012)
0.0 1.3 GO:0008361 regulation of cell size(GO:0008361)
0.0 0.8 GO:0050821 protein stabilization(GO:0050821)
0.0 0.3 GO:0080001 mucilage extrusion from seed coat(GO:0080001)
0.0 1.9 GO:0009407 toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487)
0.0 0.2 GO:0006435 threonyl-tRNA aminoacylation(GO:0006435)
0.0 0.2 GO:1900036 positive regulation of cellular response to heat(GO:1900036)
0.0 0.9 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.0 0.7 GO:0006814 sodium ion transport(GO:0006814)
0.0 1.5 GO:0048506 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.0 1.0 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 0.8 GO:0046834 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.0 0.9 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.0 0.2 GO:0009806 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.0 0.3 GO:0018107 peptidyl-threonine phosphorylation(GO:0018107) peptidyl-threonine modification(GO:0018210)
0.0 0.2 GO:0071398 response to fatty acid(GO:0070542) cellular response to fatty acid(GO:0071398)
0.0 0.1 GO:0018196 peptidyl-asparagine modification(GO:0018196) protein N-linked glycosylation via asparagine(GO:0018279)
0.0 2.2 GO:2000280 regulation of root development(GO:2000280)
0.0 0.4 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.3 GO:0043967 histone H4 acetylation(GO:0043967)
0.0 0.6 GO:0043666 regulation of phosphoprotein phosphatase activity(GO:0043666)
0.0 0.2 GO:0071588 hydrogen peroxide mediated signaling pathway(GO:0071588)
0.0 1.2 GO:0034599 cellular response to oxidative stress(GO:0034599)
0.0 0.9 GO:0043622 cortical microtubule organization(GO:0043622)
0.0 1.8 GO:0016579 protein deubiquitination(GO:0016579)
0.0 4.5 GO:0016311 dephosphorylation(GO:0016311)
0.0 0.1 GO:0010269 response to selenium ion(GO:0010269)
0.0 0.5 GO:0007030 Golgi organization(GO:0007030)
0.0 0.5 GO:0008356 asymmetric cell division(GO:0008356)
0.0 0.7 GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) positive regulation of proteasomal protein catabolic process(GO:1901800)
0.0 0.5 GO:0007186 G-protein coupled receptor signaling pathway(GO:0007186)
0.0 5.2 GO:0009620 response to fungus(GO:0009620)
0.0 4.1 GO:0071456 cellular response to hypoxia(GO:0071456)
0.0 1.6 GO:0080167 response to karrikin(GO:0080167)
0.0 0.7 GO:0010311 lateral root formation(GO:0010311)
0.0 0.1 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.0 0.1 GO:0016925 protein sumoylation(GO:0016925)
0.0 0.1 GO:0006384 transcription initiation from RNA polymerase III promoter(GO:0006384)
0.0 0.3 GO:0090630 activation of GTPase activity(GO:0090630)
0.0 0.6 GO:0034976 response to endoplasmic reticulum stress(GO:0034976)
0.0 0.4 GO:0010286 heat acclimation(GO:0010286)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0005712 chiasma(GO:0005712)
0.2 1.2 GO:0009331 glycerol-3-phosphate dehydrogenase complex(GO:0009331)
0.2 0.9 GO:0000836 ER ubiquitin ligase complex(GO:0000835) Hrd1p ubiquitin ligase complex(GO:0000836) Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.2 4.0 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.2 1.7 GO:0017119 Golgi transport complex(GO:0017119)
0.2 0.7 GO:0000126 transcription factor TFIIIB complex(GO:0000126)
0.1 0.9 GO:0031371 ubiquitin conjugating enzyme complex(GO:0031371) UBC13-MMS2 complex(GO:0031372)
0.1 2.7 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.1 2.0 GO:0000792 heterochromatin(GO:0000792)
0.1 1.8 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.1 0.4 GO:0000938 GARP complex(GO:0000938)
0.1 0.9 GO:0005801 cis-Golgi network(GO:0005801)
0.1 0.4 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.1 2.5 GO:0016592 mediator complex(GO:0016592)
0.0 3.2 GO:0016607 nuclear speck(GO:0016607)
0.0 0.6 GO:0045275 mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275)
0.0 2.2 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 0.9 GO:0055028 cortical microtubule(GO:0055028)
0.0 0.9 GO:0000145 exocyst(GO:0000145)
0.0 3.8 GO:0000325 plant-type vacuole(GO:0000325)
0.0 6.7 GO:0042579 peroxisome(GO:0005777) microbody(GO:0042579)
0.0 0.1 GO:0009840 chloroplastic endopeptidase Clp complex(GO:0009840)
0.0 0.2 GO:0005880 nuclear microtubule(GO:0005880)
0.0 0.1 GO:0008250 oligosaccharyltransferase complex(GO:0008250)
0.0 0.4 GO:0030173 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 0.2 GO:0019773 proteasome core complex, alpha-subunit complex(GO:0019773)
0.0 0.1 GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541)
0.0 0.7 GO:0090406 pollen tube(GO:0090406)
0.0 0.4 GO:0099568 cell cortex(GO:0005938) cytoplasmic region(GO:0099568)
0.0 0.9 GO:0005887 integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 3.2 GO:0000249 C-22 sterol desaturase activity(GO:0000249)
1.0 5.0 GO:1902417 (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417)
0.7 7.7 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.6 4.2 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.6 2.3 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.5 4.0 GO:0009916 alternative oxidase activity(GO:0009916)
0.5 3.5 GO:1990137 plant seed peroxidase activity(GO:1990137)
0.4 4.8 GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127)
0.3 1.3 GO:0009973 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.3 1.6 GO:0051740 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.3 1.8 GO:0004848 ureidoglycolate hydrolase activity(GO:0004848)
0.3 1.8 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.3 0.9 GO:0008440 inositol-1,4,5-trisphosphate 6-kinase activity(GO:0000823) inositol tetrakisphosphate 3-kinase activity(GO:0000824) inositol-1,4,5-trisphosphate 3-kinase activity(GO:0008440) inositol tetrakisphosphate 5-kinase activity(GO:0047326)
0.3 3.2 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.2 0.7 GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166)
0.2 0.9 GO:1990381 ubiquitin-specific protease binding(GO:1990381)
0.2 0.9 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.2 0.6 GO:0033984 indole-3-glycerol-phosphate lyase activity(GO:0033984)
0.2 1.0 GO:0036440 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.2 1.0 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.2 0.5 GO:0008517 folic acid transporter activity(GO:0008517)
0.2 1.8 GO:0004806 triglyceride lipase activity(GO:0004806)
0.2 0.9 GO:0004792 thiosulfate sulfurtransferase activity(GO:0004792)
0.2 1.4 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.2 0.5 GO:0010331 gibberellin binding(GO:0010331)
0.1 1.2 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.1 0.4 GO:1990247 N6-methyladenosine-containing RNA binding(GO:1990247)
0.1 0.9 GO:0080115 myosin tail binding(GO:0032029) myosin heavy chain binding(GO:0032036) myosin XI tail binding(GO:0080115)
0.1 0.6 GO:0005223 intracellular cGMP activated cation channel activity(GO:0005223)
0.1 1.4 GO:0008252 nucleotidase activity(GO:0008252)
0.1 5.3 GO:0003993 acid phosphatase activity(GO:0003993)
0.1 1.1 GO:0033743 peptide-methionine (R)-S-oxide reductase activity(GO:0033743)
0.1 1.0 GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity(GO:0003860)
0.1 0.3 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.1 0.8 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.1 0.6 GO:0016681 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.1 0.6 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 1.0 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.1 4.3 GO:0017137 Rab GTPase binding(GO:0017137)
0.1 0.3 GO:0032131 alkylated DNA binding(GO:0032131)
0.1 1.4 GO:0008515 sucrose transmembrane transporter activity(GO:0008515)
0.1 2.5 GO:0016832 aldehyde-lyase activity(GO:0016832)
0.1 0.6 GO:0008022 protein C-terminus binding(GO:0008022)
0.1 1.2 GO:0004311 farnesyltranstransferase activity(GO:0004311)
0.1 0.2 GO:0001054 RNA polymerase I activity(GO:0001054) RNA polymerase III activity(GO:0001056)
0.1 0.5 GO:0016004 phospholipase activator activity(GO:0016004) lipase activator activity(GO:0060229)
0.1 3.8 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.1 0.4 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.1 0.8 GO:0051879 Hsp90 protein binding(GO:0051879)
0.1 0.2 GO:0010283 pinoresinol reductase activity(GO:0010283)
0.1 0.6 GO:0016161 beta-amylase activity(GO:0016161)
0.1 1.2 GO:0043424 protein histidine kinase binding(GO:0043424)
0.0 4.3 GO:0015171 amino acid transmembrane transporter activity(GO:0015171)
0.0 0.4 GO:0000095 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.0 0.6 GO:0004017 adenylate kinase activity(GO:0004017)
0.0 0.5 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.0 1.3 GO:0005267 potassium channel activity(GO:0005267)
0.0 5.6 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 0.2 GO:0004829 threonine-tRNA ligase activity(GO:0004829)
0.0 0.3 GO:0004383 peptide receptor activity(GO:0001653) guanylate cyclase activity(GO:0004383)
0.0 1.7 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 0.2 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 5.7 GO:0061630 ubiquitin protein ligase activity(GO:0061630)
0.0 0.6 GO:0019903 protein phosphatase binding(GO:0019903)
0.0 2.2 GO:0043130 ubiquitin binding(GO:0043130)
0.0 0.5 GO:2001070 starch binding(GO:2001070)
0.0 2.1 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.3 GO:0017070 U6 snRNA binding(GO:0017070)
0.0 1.9 GO:0004364 glutathione transferase activity(GO:0004364)
0.0 0.6 GO:0019212 phosphatase inhibitor activity(GO:0019212)
0.0 0.5 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384) cadmium ion transmembrane transporter activity(GO:0015086)
0.0 2.1 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.2 GO:0004715 non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.0 0.6 GO:0016864 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.0 0.6 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 1.4 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.0 1.3 GO:0015662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism(GO:0015662)
0.0 0.3 GO:0030628 pre-mRNA 3'-splice site binding(GO:0030628)
0.0 1.0 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 0.7 GO:0008134 transcription factor binding(GO:0008134)
0.0 0.3 GO:0008327 methyl-CpG binding(GO:0008327)
0.0 1.6 GO:0019900 kinase binding(GO:0019900)
0.0 1.0 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.0 3.1 GO:0042803 protein homodimerization activity(GO:0042803)
0.0 0.2 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.0 1.3 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.2 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.0 0.9 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.1 GO:0008430 selenium binding(GO:0008430)
0.0 1.1 GO:0016684 oxidoreductase activity, acting on peroxide as acceptor(GO:0016684)
0.0 0.0 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.0 3.2 GO:0008194 UDP-glycosyltransferase activity(GO:0008194)
0.0 0.6 GO:0101005 ubiquitinyl hydrolase activity(GO:0101005)
0.0 0.2 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 15.5 GO:0003700 nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.5 PID S1P S1P1 PATHWAY S1P1 pathway
0.2 0.5 PID ARF 3PATHWAY Arf1 pathway
0.0 0.1 PID HIF1A PATHWAY Hypoxic and oxygen homeostasis regulation of HIF-1-alpha

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.2 REACTOME METABOLISM OF NUCLEOTIDES Genes involved in Metabolism of nucleotides
0.3 0.8 REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION Genes involved in NOTCH1 Intracellular Domain Regulates Transcription
0.2 0.5 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.2 2.3 REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism
0.2 0.5 REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION Genes involved in Transcriptional Regulation of White Adipocyte Differentiation
0.1 5.3 REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT Genes involved in ABC-family proteins mediated transport
0.1 0.5 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines