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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G20310
Z-value: 1.39
Transcription factors associated with AT3G20310
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G20310
|
AT3G20310 | ethylene response factor 7 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF7 | arTal_v1_Chr3_-_7086894_7086894 | 0.83 | 3.4e-08 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 3.22 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 3.20 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 3.07 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr1_-_28920976_28920976 Show fit | 2.96 |
AT1G76960.1
|
transmembrane protein |
|
| arTal_v1_Chr5_+_24608605_24608605 Show fit | 2.83 |
AT5G61160.1
|
anthocyanin 5-aromatic acyltransferase 1 |
|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 2.80 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr2_-_18077517_18077517 Show fit | 2.72 |
AT2G43570.1
|
chitinase |
|
| arTal_v1_Chr2_-_15599951_15599951 Show fit | 2.70 |
AT2G37130.2
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr2_-_15600154_15600154 Show fit | 2.65 |
AT2G37130.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_-_5133860_5133860 Show fit | 2.64 |
AT1G14880.1
|
PLANT CADMIUM RESISTANCE 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G20310
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 20.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 20.1 | GO:0032446 | protein modification by small protein conjugation(GO:0032446) |
| 0.2 | 11.8 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.2 | 11.6 | GO:0046283 | anthocyanin-containing compound metabolic process(GO:0046283) |
| 0.1 | 10.7 | GO:0006511 | ubiquitin-dependent protein catabolic process(GO:0006511) |
| 0.3 | 10.3 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.1 | 8.6 | GO:0000398 | mRNA splicing, via spliceosome(GO:0000398) |
| 0.2 | 8.4 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.2 | 8.2 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.4 | 7.9 | GO:0010112 | regulation of systemic acquired resistance(GO:0010112) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 37.8 | GO:0005773 | vacuole(GO:0005773) |
| 0.0 | 11.7 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.2 | 8.7 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.4 | 8.0 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 7.1 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 6.9 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.1 | 6.1 | GO:0033643 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 5.7 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 5.1 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.1 | 5.0 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 24.9 | GO:0000975 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 19.1 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 18.8 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.1 | 17.3 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.0 | 13.7 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 13.6 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.2 | 11.8 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 10.3 | GO:0020037 | heme binding(GO:0020037) |
| 0.1 | 9.9 | GO:0019900 | kinase binding(GO:0019900) |
| 0.1 | 8.5 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.6 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.2 | 1.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.2 | 1.2 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
| 0.4 | 0.8 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.1 | 0.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.6 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.3 | 0.5 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.2 | 0.5 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.4 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.1 | 0.2 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.3 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.4 | 2.1 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.6 | 1.9 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.3 | 1.6 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.2 | 1.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 0.8 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.1 | 0.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.6 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.2 | 0.6 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.2 | 0.6 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |