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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G18400
Z-value: 1.66
Transcription factors associated with AT3G18400
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G18400
|
AT3G18400 | NAC domain containing protein 58 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC058 | arTal_v1_Chr3_-_6320712_6320712 | 0.74 | 7.8e-06 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 10.02 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 8.58 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 8.29 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 8.18 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 8.02 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 7.87 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 7.83 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 7.70 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 7.69 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 7.67 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G18400
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 68.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.4 | 44.8 | GO:0042594 | response to starvation(GO:0042594) |
| 0.3 | 32.4 | GO:0007568 | aging(GO:0007568) |
| 0.8 | 28.0 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 4.7 | 23.7 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 2.2 | 21.6 | GO:0001676 | long-chain fatty acid metabolic process(GO:0001676) |
| 0.3 | 21.1 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.5 | 19.8 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.3 | 19.8 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 1.0 | 19.5 | GO:0002213 | defense response to insect(GO:0002213) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 150.9 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.2 | 48.4 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.3 | 25.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.2 | 24.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.4 | 24.5 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 21.5 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.4 | 17.7 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.7 | 16.3 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 14.3 | GO:0098791 | Golgi subcompartment(GO:0098791) |
| 2.3 | 14.1 | GO:0005776 | autophagosome(GO:0005776) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 60.0 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 46.3 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 39.0 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.3 | 37.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.3 | 36.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.5 | 32.5 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.6 | 30.5 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.3 | 23.4 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 2.6 | 18.1 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.2 | 17.6 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 9.1 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 1.2 | 7.2 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.9 | 6.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 1.8 | 5.4 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 1.0 | 5.1 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.5 | 2.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 2.1 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.4 | 1.6 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.7 | 1.3 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.6 | 1.1 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 7.2 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.7 | 6.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.9 | 3.6 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.9 | 3.5 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.4 | 3.0 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.5 | 2.8 | REACTOME APOPTOSIS | Genes involved in Apoptosis |
| 0.3 | 2.5 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.4 | 2.2 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.4 | 2.2 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.7 | 2.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |