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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G17730
Z-value: 1.37
Transcription factors associated with AT3G17730
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G17730
|
AT3G17730 | NAC domain containing protein 57 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC057 | arTal_v1_Chr3_+_6064272_6064272 | 0.14 | 4.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 6.64 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 5.19 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 5.05 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 5.00 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 4.82 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr1_-_10475969_10475969 Show fit | 4.80 |
AT1G29920.1
|
chlorophyll A/B-binding protein 2 |
|
| arTal_v1_Chr3_+_17228642_17228642 Show fit | 4.67 |
AT3G46780.1
|
plastid transcriptionally active 16 |
|
| arTal_v1_Chr5_-_15385247_15385320 Show fit | 4.33 |
AT5G38430.2
AT5G38430.1 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_+_4758921_4758921 Show fit | 4.14 |
AT5G14740.9
|
carbonic anhydrase 2 |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 4.05 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G17730
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.5 | 15.3 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.4 | 12.4 | GO:0009638 | phototropism(GO:0009638) |
| 0.3 | 12.2 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 1.0 | 10.5 | GO:0010196 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.2 | 10.3 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 9.6 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.6 | 9.0 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.5 | 8.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 7.8 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.3 | 7.5 | GO:0045493 | xylan catabolic process(GO:0045493) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 42.2 | GO:0048046 | apoplast(GO:0048046) |
| 2.7 | 23.9 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 21.3 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.3 | 16.7 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.2 | 11.1 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.1 | 7.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.4 | 7.1 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.0 | 7.0 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 6.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.8 | 6.1 | GO:0009538 | photosystem I reaction center(GO:0009538) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 23.3 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 2.9 | 17.2 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.0 | 11.2 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.1 | 10.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.3 | 9.0 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 8.7 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 2.9 | 8.6 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.0 | 8.3 | GO:0008168 | methyltransferase activity(GO:0008168) |
| 0.7 | 8.0 | GO:0103075 | indole-3-pyruvate monooxygenase activity(GO:0103075) |
| 0.3 | 6.6 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 1.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.9 | NABA MATRISOME | Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins |
| 0.2 | 0.7 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.2 | 0.7 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.2 | 0.5 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.3 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 9.0 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.6 | 2.9 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.8 | 2.4 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 2.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.4 | 1.1 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.2 | 0.9 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.2 | 0.7 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.1 | 0.4 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.3 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |