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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G15270
Z-value: 0.80
Transcription factors associated with AT3G15270
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G15270
|
AT3G15270 | squamosa promoter binding protein-like 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SPL5 | arTal_v1_Chr3_-_5142323_5142323 | -0.35 | 6.9e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 4.24 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 4.05 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 3.84 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 3.58 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 3.34 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr3_+_17228642_17228642 Show fit | 2.99 |
AT3G46780.1
|
plastid transcriptionally active 16 |
|
| arTal_v1_Chr5_-_4392227_4392227 Show fit | 2.68 |
AT5G13630.2
|
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) |
|
| arTal_v1_Chr5_-_4392429_4392429 Show fit | 2.68 |
AT5G13630.1
|
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 2.65 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 2.64 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G15270
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 17.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 15.2 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 1.7 | 10.3 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.5 | 8.8 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 8.5 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.1 | 6.2 | GO:0009606 | tropism(GO:0009606) |
| 0.1 | 6.1 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.3 | 5.4 | GO:0010315 | auxin efflux(GO:0010315) |
| 0.1 | 5.4 | GO:0009875 | pollen-pistil interaction(GO:0009875) |
| 0.3 | 5.2 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 52.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 21.6 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 20.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 17.9 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 12.5 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.2 | 11.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 9.6 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 8.7 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.0 | 8.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.7 | 6.6 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 15.5 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.2 | 11.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.4 | 9.0 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.3 | 7.5 | GO:0080161 | auxin transmembrane transporter activity(GO:0080161) |
| 0.3 | 7.3 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.3 | 6.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.2 | 6.4 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.2 | 5.9 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 5.9 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.1 | 5.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 1.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 1.2 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 1.1 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.3 | 1.0 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.3 | 0.9 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.8 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.6 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.1 | 0.5 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.5 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.4 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.3 | 1.5 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.2 | 1.5 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.5 | 1.4 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.1 | 1.1 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.3 | 1.0 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
| 0.2 | 1.0 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 1.0 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.3 | 0.9 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.2 | 0.8 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |