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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G15210
Z-value: 0.99
Transcription factors associated with AT3G15210
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G15210
|
AT3G15210 | ethylene responsive element binding factor 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF4 | arTal_v1_Chr3_+_5121303_5121303 | -0.72 | 1.6e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 4.50 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 4.43 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 4.40 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 4.13 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 3.82 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 3.79 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr3_-_11013451_11013451 Show fit | 3.49 |
AT3G29030.1
|
expansin A5 |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 3.33 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 3.31 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr2_+_2199151_2199151 Show fit | 3.30 |
AT2G05790.1
|
O-Glycosyl hydrolases family 17 protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G15210
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 19.7 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 13.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.4 | 10.1 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.3 | 9.8 | GO:0042335 | cuticle development(GO:0042335) |
| 0.3 | 6.0 | GO:0010207 | photosystem II assembly(GO:0010207) |
| 0.3 | 5.6 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 5.4 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 4.9 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.3 | 4.6 | GO:1902183 | regulation of shoot apical meristem development(GO:1902183) |
| 0.2 | 4.5 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 73.5 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 62.6 | GO:0009579 | thylakoid(GO:0009579) |
| 0.2 | 29.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 19.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 16.8 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 13.9 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 12.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 8.9 | GO:0010319 | stromule(GO:0010319) |
| 0.3 | 7.0 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.8 | 6.6 | GO:0009538 | photosystem I reaction center(GO:0009538) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 12.1 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 11.3 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 10.9 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.1 | 9.9 | GO:0004857 | enzyme inhibitor activity(GO:0004857) |
| 0.2 | 6.6 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.2 | 5.7 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 5.7 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.2 | 5.0 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 5.0 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.3 | 4.9 | GO:0004312 | fatty acid synthase activity(GO:0004312) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 2.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.3 | 1.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.4 | 1.5 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.3 | 1.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.9 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.7 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.1 | 0.6 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.3 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.0 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 1.9 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.5 | 1.6 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.2 | 1.6 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 1.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.3 | 1.2 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.2 | 1.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 1.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.2 | 1.2 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.1 | 1.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |