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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G12720
Z-value: 0.66
Transcription factors associated with AT3G12720
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G12720
|
AT3G12720 | myb domain protein 67 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB67 | arTal_v1_Chr3_-_4044715_4044715 | -0.38 | 4.9e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3008910_3008910 Show fit | 0.66 |
AT1G09310.1
|
plant/protein (Protein of unknown function, DUF538) |
|
| arTal_v1_Chr1_+_26687202_26687202 Show fit | 0.63 |
AT1G70760.1
|
inorganic carbon transport protein-like protein |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 0.61 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 0.58 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 0.57 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr1_+_11310997_11310997 Show fit | 0.55 |
AT1G31580.1
|
ECS1 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 0.54 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr2_-_17648945_17649062 Show fit | 0.54 |
AT2G42380.1
AT2G42380.4 AT2G42380.3 AT2G42380.2 AT2G42380.5 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr5_+_6457026_6457026 Show fit | 0.53 |
AT5G19190.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_19454798_19454798 Show fit | 0.53 |
AT1G52230.1
|
photosystem I subunit H2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G12720
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.3 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 2.6 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 2.5 | GO:0019685 | photosynthesis, dark reaction(GO:0019685) |
| 0.1 | 2.4 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.2 | 2.3 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 2.3 | GO:0019761 | S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761) |
| 0.0 | 2.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 2.0 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.1 | 1.8 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.1 | 1.8 | GO:0009645 | response to low light intensity stimulus(GO:0009645) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 14.4 | GO:0055035 | plastid thylakoid membrane(GO:0055035) |
| 0.0 | 13.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 9.5 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 6.6 | GO:0044434 | chloroplast part(GO:0044434) |
| 0.2 | 6.3 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 4.8 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 4.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 3.7 | GO:0031976 | plastid thylakoid(GO:0031976) |
| 0.0 | 2.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 2.7 | GO:0009522 | photosystem I(GO:0009522) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.4 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 2.9 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.0 | 2.8 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.0 | 2.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 2.4 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 1.9 | GO:0070008 | serine-type exopeptidase activity(GO:0070008) |
| 0.0 | 1.9 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 1.8 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.1 | 1.6 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.0 | 1.4 | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor(GO:0016655) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.7 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.5 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.0 | 0.5 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.3 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.2 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
| 0.1 | 0.2 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.0 | 0.2 | ST DIFFERENTIATION PATHWAY IN PC12 CELLS | Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway. |
| 0.0 | 0.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.2 | PID ATR PATHWAY | ATR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.7 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.4 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.3 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.0 | 0.3 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.1 | 0.2 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.0 | 0.2 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.2 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |
| 0.0 | 0.2 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |
| 0.0 | 0.1 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |