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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G12250
Z-value: 1.37
Transcription factors associated with AT3G12250
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G12250
|
AT3G12250 | TGACG motif-binding factor 6 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TGA6 | arTal_v1_Chr3_+_3906351_3906351 | 0.64 | 2.8e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 6.19 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 6.09 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 5.74 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 5.68 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 5.29 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 5.12 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr1_-_3752780_3752780 Show fit | 5.00 |
AT1G11190.1
|
bifunctional nuclease i |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 4.98 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr1_+_27538190_27538190 Show fit | 4.75 |
AT1G73220.1
|
organic cation/carnitine transporter1 |
|
| arTal_v1_Chr1_+_5290747_5290747 Show fit | 4.74 |
AT1G15380.2
|
Lactoylglutathione lyase / glyoxalase I family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G12250
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 56.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 21.2 | GO:0030163 | protein catabolic process(GO:0030163) |
| 0.5 | 21.0 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.2 | 20.2 | GO:0007568 | aging(GO:0007568) |
| 0.4 | 17.9 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.6 | 13.9 | GO:0009065 | glutamine family amino acid catabolic process(GO:0009065) |
| 0.3 | 13.2 | GO:0006749 | glutathione metabolic process(GO:0006749) |
| 2.9 | 11.6 | GO:1901601 | lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601) |
| 0.3 | 11.1 | GO:0072666 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.1 | 10.8 | GO:0010200 | response to chitin(GO:0010200) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 18.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.2 | 15.8 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 12.9 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 11.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.2 | 10.3 | GO:0016592 | mediator complex(GO:0016592) |
| 0.2 | 9.4 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
| 0.2 | 9.1 | GO:0005770 | late endosome(GO:0005770) |
| 0.1 | 8.6 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.5 | 7.6 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 1.1 | 6.3 | GO:0005776 | autophagosome(GO:0005776) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 24.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 23.5 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
| 0.2 | 23.2 | GO:0061659 | ubiquitin protein ligase activity(GO:0061630) ubiquitin-like protein ligase activity(GO:0061659) |
| 0.4 | 21.3 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 2.6 | 18.5 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.1 | 17.3 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 16.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 12.7 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.8 | 11.5 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
| 0.9 | 10.8 | GO:0047893 | flavonol 3-O-glucosyltransferase activity(GO:0047893) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 5.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.7 | 3.6 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.4 | 3.0 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.9 | 2.7 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.8 | 2.4 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.3 | 1.7 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.3 | 1.0 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.3 | 0.9 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.2 | 0.9 | PID MYC PATHWAY | C-MYC pathway |
| 0.2 | 0.9 | PID P73PATHWAY | p73 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 8.4 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.9 | 5.3 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.7 | 3.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.4 | 3.2 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.3 | 2.9 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.8 | 2.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.4 | 2.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.5 | 1.5 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.4 | 1.3 | REACTOME TRANSPORT OF MATURE TRANSCRIPT TO CYTOPLASM | Genes involved in Transport of Mature Transcript to Cytoplasm |
| 0.3 | 1.3 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |