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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G11280
Z-value: 0.72
Transcription factors associated with AT3G11280
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G11280
|
AT3G11280 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G11280 | arTal_v1_Chr3_-_3534958_3534994 | 0.19 | 3.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 3.19 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_15859911_15859911 Show fit | 2.66 |
AT5G39610.1
|
NAC domain containing protein 6 |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 2.41 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr3_+_9208861_9208941 Show fit | 2.39 |
AT3G25290.1
AT3G25290.2 |
Auxin-responsive family protein |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 2.30 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr5_-_8659352_8659352 Show fit | 2.06 |
AT5G25110.1
|
CBL-interacting protein kinase 25 |
|
| arTal_v1_Chr3_+_5243432_5243432 Show fit | 1.98 |
AT3G15510.1
|
NAC domain containing protein 2 |
|
| arTal_v1_Chr1_-_16789436_16789436 Show fit | 1.98 |
AT1G44130.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_-_12149072_12149072 Show fit | 1.95 |
AT2G28400.1
|
senescence regulator (Protein of unknown function, DUF584) |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 1.91 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G11280
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.6 | GO:0071453 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.5 | 4.8 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
| 0.6 | 4.0 | GO:0006597 | spermine biosynthetic process(GO:0006597) |
| 0.3 | 3.3 | GO:0048317 | seed morphogenesis(GO:0048317) |
| 0.5 | 2.7 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.1 | 2.6 | GO:0006074 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 0.0 | 2.6 | GO:0051607 | defense response to virus(GO:0051607) |
| 0.0 | 2.6 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 0.2 | 2.4 | GO:0070813 | hydrogen sulfide metabolic process(GO:0070813) |
| 0.0 | 2.4 | GO:0055046 | microgametogenesis(GO:0055046) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.7 | GO:0030054 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.1 | 2.6 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 1.8 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.6 | GO:0090406 | pollen tube(GO:0090406) |
| 0.2 | 1.4 | GO:0090395 | plant cell papilla(GO:0090395) |
| 0.1 | 1.4 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.4 | GO:0005778 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
| 0.0 | 1.3 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 1.1 | GO:0043230 | extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561) |
| 0.1 | 1.1 | GO:0005880 | nuclear microtubule(GO:0005880) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.3 | GO:0042803 | protein homodimerization activity(GO:0042803) |
| 0.0 | 6.3 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.8 | 4.8 | GO:0080109 | indole-3-acetonitrile nitrile hydratase activity(GO:0080109) |
| 0.8 | 4.0 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.1 | 2.6 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
| 0.0 | 2.1 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
| 0.6 | 1.7 | GO:0050502 | trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502) |
| 0.1 | 1.7 | GO:0097602 | cullin family protein binding(GO:0097602) |
| 0.4 | 1.6 | GO:0008301 | DNA binding, bending(GO:0008301) |
| 0.0 | 1.6 | GO:0016413 | O-acetyltransferase activity(GO:0016413) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.1 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.7 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.2 | 0.6 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.1 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
| 0.0 | 0.1 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.0 | 0.1 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.4 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 1.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.7 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.1 | 0.4 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.4 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.1 | 0.3 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.0 | 0.3 | REACTOME MEMBRANE TRAFFICKING | Genes involved in Membrane Trafficking |
| 0.1 | 0.2 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.2 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |