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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G11280

Z-value: 0.72

Transcription factors associated with AT3G11280

Gene Symbol Gene ID Gene Info
AT3G11280
AT3G11280 Duplicated homeodomain-like superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT3G11280arTal_v1_Chr3_-_3534958_35349940.193.3e-01Click!

Activity profile of AT3G11280 motif

Sorted Z-values of AT3G11280 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_+_15983199 3.19 AT3G44300.1
NIT2
nitrilase 2
Chr5_-_15859911 2.66 AT5G39610.1
NAC6
NAC domain containing protein 6
Chr3_-_3197457 2.41 AT3G10320.1
AT3G10320
Glycosyltransferase family 61 protein
Chr3_+_9208861 2.39 AT3G25290.1
AT3G25290.2
AT3G25290
Auxin-responsive family protein
Chr1_+_30150897 2.30 AT1G80160.3
AT1G80160.1
AT1G80160.2
GLYI7
Lactoylglutathione lyase / glyoxalase I family protein
Chr5_-_8659352 2.06 AT5G25110.1
CIPK25
CBL-interacting protein kinase 25
Chr3_+_5243432 1.98 AT3G15510.1
NAC2
NAC domain containing protein 2
Chr1_-_16789436 1.98 AT1G44130.1
AT1G44130
Eukaryotic aspartyl protease family protein
Chr2_-_12149072 1.95 AT2G28400.1
AT2G28400
senescence regulator (Protein of unknown function, DUF584)
Chr1_-_23238644 1.91 AT1G62760.1
AT1G62760
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr1_+_28740540 1.87 AT1G76590.1
AT1G76590
PLATZ transcription factor family protein
Chr1_+_7949476 1.78 AT1G22500.1
ATL15
RING/U-box superfamily protein
Chr5_-_763322 1.73 AT5G03210.1
DIP2
E3 ubiquitin-protein ligase
Chr1_-_10356482 1.73 AT1G29640.1
AT1G29640
senescence regulator (Protein of unknown function, DUF584)
Chr4_-_16942060 1.72 AT4G35750.1
AT4G35750
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Chr5_-_4151201 1.68 AT5G13080.1
WRKY75
WRKY DNA-binding protein 75
Chr3_+_18465318 1.68 AT3G49780.1
PSK4
phytosulfokine 4 precursor
Chr4_-_10591546 1.63 AT4G19420.3
AT4G19420.2
AT4G19420.1
AT4G19420
Pectinacetylesterase family protein
Chr4_-_13672413 1.59 AT4G27300.1
AT4G27300
S-locus lectin protein kinase family protein
Chr5_+_23003909 1.58 AT5G56870.1
BGAL4
beta-galactosidase 4
Chr5_-_22186633 1.58 AT5G54610.1
ANK
ankyrin
Chr1_+_26038905 1.57 AT1G69260.1
AFP1
ABI five binding protein
Chr4_-_11636720 1.55 AT4G21920.1
AT4G21920
hypothetical protein
Chr3_-_21293158 1.55 AT3G57520.2
AT3G57520.3
AT3G57520.1
SIP2
seed imbibition 2
Chr1_-_2175038 1.54 AT1G07090.1
LSH6
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Chr3_+_23135630 1.53 AT3G62550.1
AT3G62550
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr1_-_1996355 1.46 AT1G06520.1
GPAT1
glycerol-3-phosphate acyltransferase 1
Chr5_-_763480 1.44 AT5G03210.2
DIP2
E3 ubiquitin-protein ligase
Chr4_-_10590700 1.42 AT4G19420.4
AT4G19420
Pectinacetylesterase family protein
Chr3_-_1660380 1.40 AT3G05675.3
AT3G05675.2
AT3G05675.1
AT3G05675
BTB/POZ domain-containing protein
Chr2_-_19412328 1.37 AT2G47270.1
UPB1
transcription factor UPBEAT protein
Chr4_-_13606468 1.36 AT4G27130.1
AT4G27130
Translation initiation factor SUI1 family protein
Chr1_+_23072222 1.35 AT1G62370.1
AT1G62370
RING/U-box superfamily protein
Chr1_-_19690589 1.34 AT1G52880.1
NAM
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr1_-_13836954 1.33 AT1G36622.1
AT1G36622
transmembrane protein
Chr5_-_4933620 1.31 AT5G15190.2
AT5G15190.1
AT5G15190
hypothetical protein
Chr1_-_25662276 1.31 AT1G68450.1
PDE337
VQ motif-containing protein
Chr4_-_13216586 1.31 AT4G26060.1
AT4G26060
Ribosomal protein L18ae family
Chr2_-_15425129 1.31 AT2G36800.1
DOGT1
don-glucosyltransferase 1
Chr5_-_24083528 1.30 AT5G59780.2
AT5G59780.1
AT5G59780.3
MYB59
myb domain protein 59
Chr5_-_8547822 1.29 AT5G24870.2
AT5G24870.1
AT5G24870
RING/U-box superfamily protein
Chr1_+_27118177 1.26 AT1G72060.1
AT1G72060
serine-type endopeptidase inhibitor
Chr1_+_5171181 1.25 AT1G15010.1
AT1G15010
mediator of RNA polymerase II transcription subunit
Chr2_-_16368570 1.24 AT2G39210.1
AT2G39210
Major facilitator superfamily protein
Chr3_+_22602816 1.21 AT3G61060.1
AT3G61060.2
PP2-A13
phloem protein 2-A13
Chr2_+_16747831 1.19 AT2G40110.1
AT2G40110.3
AT2G40110.2
AT2G40110.4
AT2G40110
Yippee family putative zinc-binding protein
Chr5_-_8547423 1.19 AT5G24870.3
AT5G24870
RING/U-box superfamily protein
Chr2_-_14051400 1.18 AT2G33150.1
PKT3
peroxisomal 3-ketoacyl-CoA thiolase 3
Chr3_-_19284146 1.18 AT3G51960.1
AT3G51960.2
AT3G51960.3
BZIP24
basic leucine zipper 24
Chr4_-_7686873 1.17 AT4G13250.2
AT4G13250.1
NYC1
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_-_13729002 1.16 AT4G27450.1
AT4G27450
aluminum induced protein with YGL and LRDR motifs
Chr1_+_2867203 1.16 AT1G08920.1
AT1G08920.2
AT1G08920.3
ESL1
ERD (early response to dehydration) six-like 1
Chr1_+_8139114 1.15 AT1G22990.1
AT1G22990.2
HIPP22
Heavy metal transport/detoxification superfamily protein
Chr3_+_22216540 1.15 AT3G60140.2
AT3G60140.1
DIN2
Glycosyl hydrolase superfamily protein
Chr1_-_24558322 1.14 AT1G65970.1
TPX2
thioredoxin-dependent peroxidase 2
Chr5_+_864261 1.13 AT5G03460.1
AT5G03460
transmembrane protein
Chr2_-_15151575 1.13 AT2G36080.3
AT2G36080.2
AT2G36080.4
AT2G36080.1
ABS2
AP2/B3-like transcriptional factor family protein
Chr5_-_17994584 1.13 AT5G44610.3
AT5G44610.2
AT5G44610.1
MAP18
microtubule-associated protein 18
Chr3_-_1156876 1.12 AT3G04350.1
AT3G04350.2
AT3G04350
vacuolar sorting-associated protein (DUF946)
Chr5_+_21534473 1.11 AT5G53120.6
AT5G53120.1
AT5G53120.2
SPDS3
spermidine synthase 3
Chr5_-_7496990 1.11 AT5G22570.1
WRKY38
WRKY DNA-binding protein 38
Chr2_+_9627342 1.11 AT2G22660.3
AT2G22660.2
AT2G22660.1
AT2G22660
DNA-binding protein, putative (duplicated DUF1399)
Chr4_+_9385119 1.11 AT4G16670.2
AT4G16670.3
AT4G16670.1
AT4G16670
auxin canalization protein (DUF828)
Chr5_+_26864846 1.10 AT5G67340.2
AT5G67340
ARM repeat superfamily protein
Chr3_+_4049309 1.10 AT3G12740.1
ALIS1
ALA-interacting subunit 1
Chr3_+_10442608 1.09 AT3G28050.1
UMAMIT41
nodulin MtN21 /EamA-like transporter family protein
Chr3_-_3311327 1.09 AT3G10590.1
AT3G10590
Duplicated homeodomain-like superfamily protein
Chr3_+_14914008 1.08 AT3G42806.1
AT3G42806

Chr5_-_3447278 1.06 AT5G10930.1
CIPK5
CBL-interacting protein kinase 5
Chr4_+_8218261 1.06 AT4G14270.2
AT4G14270
polyadenylate-binding protein interacting protein
Chr1_-_2152541 1.05 AT1G07000.1
EXO70B2
exocyst subunit exo70 family protein B2
Chr4_+_8218083 1.05 AT4G14270.1
AT4G14270
polyadenylate-binding protein interacting protein
Chr5_+_26864395 1.05 AT5G67340.1
AT5G67340
ARM repeat superfamily protein
Chr5_+_21534766 1.04 AT5G53120.7
AT5G53120.3
SPDS3
spermidine synthase 3
Chr1_-_19993334 1.03 AT1G53580.2
AT1G53580.1
GLY3
glyoxalase II 3
Chr2_+_2457573 1.02 AT2G06255.1
ELF4-L3
ELF4-like 3
Chr2_+_239669 1.00 AT2G01530.1
MLP329
MLP-like protein 329
Chr1_+_21652988 1.00 AT1G58340.1
ZF14
MATE efflux family protein
Chr3_-_5275095 1.00 AT3G15580.1
APG8H
Ubiquitin-like superfamily protein
Chr4_+_6905848 1.00 AT4G11360.1
RHA1B
RING-H2 finger A1B
Chr1_-_25816983 0.99 AT1G68740.1
AT1G68740.2
PHO1%3BH1
EXS (ERD1/XPR1/SYG1) family protein
Chr1_-_18477643 0.98 AT1G49900.1
AT1G49900
C2H2 type zinc finger transcription factor family
Chr1_-_9864779 0.96 AT1G28230.1
PUP1
purine permease 1
Chr5_+_26939159 0.96 AT5G67520.3
AT5G67520.2
AT5G67520.1
APK4
adenosine-5'-phosphosulfate (APS) kinase 4
Chr5_-_18679191 0.95 AT5G46050.1
PTR3
peptide transporter 3
Chr4_+_131422 0.95 AT4G00305.1
AT4G00305
RING/U-box superfamily protein
Chr4_-_11988949 0.94 AT4G22820.2
AT4G22820.1
AT4G22820
A20/AN1-like zinc finger family protein
Chr4_+_7641378 0.94 AT4G13110.1
AT4G13110
BSD domain-containing protein
Chr5_+_21535260 0.93 AT5G53120.5
SPDS3
spermidine synthase 3
Chr3_+_22716238 0.93 AT3G61390.1
AT3G61390.2
AT3G61390.3
AT3G61390.4
AT3G61390.5
AT3G61390
RING/U-box superfamily protein
Chr5_+_8082650 0.93 AT5G23950.2
AT5G23950.1
AT5G23950
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr2_-_16287967 0.92 AT2G39000.3
AT2G39000.2
AT2G39000.4
AT2G39000
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr5_+_21535059 0.92 AT5G53120.4
SPDS3
spermidine synthase 3
Chr1_-_23669125 0.92 AT1G63800.1
AT1G63800.2
UBC5
ubiquitin-conjugating enzyme 5
Chr5_-_19291103 0.91 AT5G47560.1
TDT
tonoplast dicarboxylate transporter
Chr1_-_12351229 0.90 AT1G33970.1
AT1G33970.2
AT1G33970.5
AT1G33970.4
AT1G33970.3
AT1G33970
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_24086558 0.90 AT1G64810.1
AT1G64810.2
APO1
APO RNA-binding protein (DUF794)
Chr1_+_11181504 0.89 AT1G31280.1
AGO2
Argonaute family protein
Chr2_+_10310482 0.89 AT2G24240.1
AT2G24240
BTB/POZ domain with WD40/YVTN repeat-like protein
Chr1_-_20079022 0.88 AT1G53780.4
AT1G53780
26S proteasome regulatory complex ATPase
Chr3_-_18348730 0.88 AT3G49490.1
AT3G49490
hypothetical protein
Chr2_+_6980218 0.88 AT2G16050.1
AT2G16050
Cysteine/Histidine-rich C1 domain family protein
Chr3_+_4940318 0.88 AT3G14700.2
AT3G14700.1
AT3G14700
SART-1 family
Chr5_+_894582 0.88 AT5G03545.1
AT5G03545
expressed in response to phosphate starvation protein
Chr5_-_18676883 0.88 AT5G46050.2
PTR3
peptide transporter 3
Chr5_-_4722371 0.87 AT5G14640.1
SK13
shaggy-like kinase 13
Chr3_-_16735951 0.86 AT3G45600.1
AT3G45600.2
TET3
tetraspanin3
Chr1_+_26267000 0.86 AT1G69790.2
AT1G69790
Protein kinase superfamily protein
Chr1_-_10561545 0.86 AT1G30090.1
AT1G30090
Galactose oxidase/kelch repeat superfamily protein
Chr1_+_138489 0.85 AT1G01355.2
AT1G01355.3
AT1G01355.1
AT1G01355
Putative endonuclease or glycosyl hydrolase
Chr5_-_4722048 0.85 AT5G14640.2
SK13
shaggy-like kinase 13
Chr2_-_16288262 0.85 AT2G39000.1
AT2G39000
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr5_-_22822904 0.85 AT5G56350.1
AT5G56350
Pyruvate kinase family protein
Chr4_-_9453300 0.83 AT4G16790.1
AT4G16790
hydroxyproline-rich glycoprotein family protein
Chr5_-_20878464 0.83 AT5G51390.1
AT5G51390
hypothetical protein
Chr1_+_26266592 0.83 AT1G69790.1
AT1G69790
Protein kinase superfamily protein
Chr1_+_141870 0.83 AT1G01360.1
RCAR1
regulatory component of ABA receptor 1
Chr3_+_9769634 0.82 AT3G26600.2
AT3G26600.1
ARO4
armadillo repeat only 4
Chr2_+_16452612 0.82 AT2G39400.2
AT2G39400.1
AT2G39400
alpha/beta-Hydrolases superfamily protein
Chr5_-_23450933 0.82 AT5G57900.1
SKIP1
SKP1 interacting partner 1
Chr5_-_7884360 0.82 AT5G23405.3
AT5G23405.1
AT5G23405
HMG-box (high mobility group) DNA-binding family protein
Chr5_-_22030060 0.81 AT5G54250.2
AT5G54250.1
AT5G54250.4
AT5G54250.3
CNGC4
cyclic nucleotide-gated cation channel 4
Chr2_-_9767 0.80 AT2G01023.1
AT2G01023
hypothetical protein
Chr3_-_6921600 0.80 AT3G19895.1
AT3G19895
RING/U-box superfamily protein
Chr1_+_2927502 0.78 AT1G09070.1
SRC2
soybean gene regulated by cold-2
Chr5_-_20634618 0.78 AT5G50720.1
HVA22E
HVA22 homologue E
Chr3_-_6214785 0.77 AT3G18140.2
AT3G18140.1
LST8-1
Transducin/WD40 repeat-like superfamily protein
Chr2_-_19044955 0.77 AT2G46400.1
WRKY46
WRKY DNA-binding protein 46
Chr1_+_21726963 0.77 AT1G58470.1
AT1G58470.2
RBP1
RNA-binding protein 1
Chr5_-_25804980 0.77 AT5G64550.1
AT5G64550
loricrin-like protein
Chr3_+_6123341 0.76 AT3G17880.1
AT3G17880.2
TDX
tetraticopeptide domain-containing thioredoxin
Chr4_+_9945778 0.76 AT4G17900.1
AT4G17900.2
AT4G17900
PLATZ transcription factor family protein
Chr1_-_12070421 0.76 AT1G33270.2
AT1G33270.1
AT1G33270
Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein
Chr4_+_1511597 0.76 AT4G03420.1
AT4G03420
hypothetical protein (DUF789)
Chr5_+_20048239 0.76 AT5G49440.1
AT5G49440
hypothetical protein
Chr3_+_6926189 0.76 AT3G19910.1
AT3G19910.2
AT3G19910
RING/U-box superfamily protein
Chr1_+_6709773 0.75 AT1G19394.1
AT1G19396.2
AT1G19396.3
AT1G19396.1
AT1G19394
AT1G19396
hypothetical protein
hypothetical protein
Chr1_+_19214072 0.75 AT1G51800.1
IOS1
Leucine-rich repeat protein kinase family protein
Chr1_+_25442404 0.75 AT1G67856.1
AT1G67856
RING/U-box superfamily protein
Chr4_+_2076832 0.74 AT4G04293.1
AT4G04293

Chr1_-_11595982 0.74 AT1G32190.2
AT1G32190.1
AT1G32190
alpha/beta-Hydrolases superfamily protein
Chr4_+_13253084 0.74 AT4G26150.1
CGA1
cytokinin-responsive gata factor 1
Chr5_-_1925407 0.74 AT5G06300.1
LOG7
Putative lysine decarboxylase family protein
Chr2_-_6922025 0.74 AT2G15890.2
AT2G15890.1
MEE14
maternal effect embryo arrest 14
Chr1_+_7651882 0.74 AT1G21780.2
AT1G21780.1
AT1G21780
BTB/POZ domain-containing protein
Chr1_-_11971532 0.74 AT1G33050.4
AT1G33050.5
AT1G33050.3
AT1G33050.2
AT1G33050
hypothetical protein
Chr1_+_27241696 0.73 AT1G72360.2
AT1G72360.3
AT1G72360.1
ERF73
Integrase-type DNA-binding superfamily protein
Chr1_-_20077773 0.73 AT1G53780.3
AT1G53780.2
AT1G53780
26S proteasome regulatory complex ATPase
Chr1_-_16838562 0.73 AT1G44350.1
ILL6
IAA-amino acid hydrolase ILR1-like 6
Chr1_-_25541740 0.73 AT1G68140.2
AT1G68140.3
AT1G68140.4
AT1G68140.1
AT1G68140
zinc finger/BTB domain protein, putative (DUF1644)
Chr5_+_13521746 0.73 AT5G35320.1
AT5G35320
DBH-like monooxygenase
Chr1_+_22829921 0.72 AT1G61810.2
AT1G61810.1
AT1G61810.3
AT1G61810.4
BGLU45
beta-glucosidase 45
Chr2_-_13631929 0.72 AT2G32020.1
AT2G32020
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr2_+_17490271 0.72 AT2G41900.1
OXS2
CCCH-type zinc finger protein with ARM repeat domain-containing protein
Chr4_-_9428894 0.71 AT4G16760.1
AT4G16760.2
ACX1
acyl-CoA oxidase 1
Chr5_-_15658632 0.71 AT5G39110.1
AT5G39110
RmlC-like cupins superfamily protein
Chr1_-_12516521 0.71 AT1G34315.1
AT1G34315
transmembrane protein
Chr1_+_6913001 0.71 AT1G19910.1
AT1G19910.2
AVA-P2
ATPase, F0/V0 complex, subunit C protein
Chr4_-_16960170 0.70 AT4G35790.1
AT4G35790.3
PLDDELTA
phospholipase D delta
Chr3_+_21484362 0.70 AT3G58030.1
AT3G58030.2
AT3G58030.3
AT3G58030
RING/U-box superfamily protein
Chr2_-_13262216 0.70 AT2G31110.3
AT2G31110.2
AT2G31110
trichome birefringence-like protein (DUF828)
Chr3_+_18733021 0.70 AT3G50480.2
AT3G50480.1
HR4
homolog of RPW8 4
Chr5_+_25771949 0.69 AT5G64450.1
AT5G64450
NYN domain protein
Chr3_+_2457027 0.69 AT3G07690.1
AT3G07690.2
AT3G07690
6-phosphogluconate dehydrogenase family protein
Chr5_-_18097611 0.69 AT5G44820.1
AT5G44820
Nucleotide-diphospho-sugar transferase family protein
Chr4_+_5723651 0.68 AT4G08920.1
CRY1
cryptochrome 1
Chr5_-_352095 0.68 AT5G01900.1
WRKY62
WRKY DNA-binding protein 62
Chr5_+_5755222 0.68 AT5G17450.2
AT5G17450.1
HIPP21
Heavy metal transport/detoxification superfamily protein
Chr2_+_11985687 0.68 AT2G28120.1
AT2G28120
Major facilitator superfamily protein
Chr1_-_11971072 0.68 AT1G33050.1
AT1G33050.6
AT1G33050
hypothetical protein
Chr4_-_13924775 0.67 AT4G27990.1
YLMG1-2
YGGT family protein
Chr5_-_6136807 0.67 AT5G18490.1
AT5G18490
vacuolar sorting-associated protein (DUF946)
Chr2_-_18038282 0.67 AT2G43430.3
AT2G43430.1
AT2G43430.2
GLX2-1
glyoxalase 2-1
Chr4_-_16960407 0.67 AT4G35790.2
PLDDELTA
phospholipase D delta
Chr5_-_5788291 0.67 AT5G17550.2
AT5G17550.1
PEX19-2
peroxin 19-2
Chr1_-_1552587 0.66 AT1G05310.1
AT1G05310
Pectin lyase-like superfamily protein
Chr3_-_3725593 0.66 AT3G11780.2
AT3G11780.1
AT3G11780
MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
Chr5_+_22085998 0.66 AT5G54390.1
HL
HAL2-like protein
Chr1_-_6757420 0.66 AT1G19510.1
RL5
RAD-like 5
Chr3_-_5148340 0.65 AT3G15300.1
AT3G15300
VQ motif-containing protein
Chr4_-_6435396 0.65 AT4G10380.1
NIP5%3B1
NOD26-like intrinsic protein 5;1
Chr1_-_11719988 0.65 AT1G32450.1
NRT1.5
nitrate transporter 1.5
Chr1_-_5420859 0.65 AT1G15750.3
AT1G15750.1
AT1G15750.4
AT1G15750.2
TPL
Transducin family protein / WD-40 repeat family protein
Chr1_+_19667127 0.65 AT1G52810.1
AT1G52810
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr2_-_10737800 0.64 AT2G25200.1
AT2G25200
hypothetical protein (DUF868)
Chr2_-_13259552 0.64 AT2G31110.1
AT2G31110
trichome birefringence-like protein (DUF828)
Chr1_-_3823088 0.64 AT1G11360.4
AT1G11360.1
AT1G11360.3
AT1G11360.2
AT1G11360
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr1_+_8432179 0.64 AT1G23870.1
TPS9
trehalose-phosphatase/synthase 9
Chr4_-_13172904 0.63 AT4G25940.1
AT4G25940
ENTH/ANTH/VHS superfamily protein
Chr4_-_11951424 0.63 AT4G22750.1
AT4G22750
DHHC-type zinc finger protein
Chr2_-_15416845 0.63 AT2G36770.1
AT2G36770
UDP-Glycosyltransferase superfamily protein
Chr5_+_20051829 0.63 AT5G49450.1
bZIP1
basic leucine-zipper 1
Chr3_+_21484156 0.63 AT3G58030.4
AT3G58030
RING/U-box superfamily protein
Chr5_+_25477541 0.63 AT5G63640.1
AT5G63640.2
AT5G63640
ENTH/VHS/GAT family protein
Chr3_+_10023931 0.63 AT3G27170.1
CLC-B
chloride channel B
Chr1_-_11972580 0.63 AT1G33055.1
AT1G33055
hypothetical protein
Chr2_-_14999125 0.62 AT2G35680.1
AT2G35680
Phosphotyrosine protein phosphatases superfamily protein
Chr1_-_20078263 0.62 AT1G53780.1
AT1G53780
26S proteasome regulatory complex ATPase
Chr2_+_18236789 0.62 AT2G44080.1
ARL
ARGOS-like protein
Chr1_+_19651172 0.62 AT1G52760.1
LysoPL2
lysophospholipase 2

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G11280

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 2.3 GO:0033530 raffinose metabolic process(GO:0033530)
0.6 1.3 GO:0035865 cellular response to potassium ion(GO:0035865)
0.6 4.0 GO:0006597 spermine biosynthetic process(GO:0006597)
0.6 1.7 GO:0010055 atrichoblast differentiation(GO:0010055)
0.5 2.7 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.5 4.8 GO:0051410 detoxification of nitrogen compound(GO:0051410)
0.5 1.8 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.4 1.2 GO:0010124 phenylacetate catabolic process(GO:0010124)
0.4 1.1 GO:0090224 regulation of mitotic spindle organization(GO:0060236) regulation of spindle organization(GO:0090224)
0.4 1.9 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.4 1.1 GO:0031115 negative regulation of microtubule polymerization(GO:0031115)
0.3 1.0 GO:0010184 cytokinin transport(GO:0010184)
0.3 2.1 GO:0030007 cellular potassium ion homeostasis(GO:0030007)
0.3 1.1 GO:0046373 L-arabinose metabolic process(GO:0046373)
0.3 3.3 GO:0048317 seed morphogenesis(GO:0048317)
0.2 0.7 GO:1902289 negative regulation of defense response to oomycetes(GO:1902289)
0.2 2.4 GO:0070813 hydrogen sulfide metabolic process(GO:0070813)
0.2 1.4 GO:0034059 response to anoxia(GO:0034059)
0.2 0.7 GO:1903793 positive regulation of transporter activity(GO:0032411) positive regulation of ion transmembrane transporter activity(GO:0032414) positive regulation of anion channel activity(GO:1901529) response to strigolactone(GO:1902347) positive regulation of anion transport(GO:1903793) positive regulation of anion transmembrane transport(GO:1903961)
0.2 0.7 GO:0090143 nucleoid organization(GO:0090143)
0.2 1.6 GO:0033169 histone H3-K9 demethylation(GO:0033169)
0.2 0.5 GO:0018065 protein-cofactor linkage(GO:0018065)
0.2 0.9 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.2 0.7 GO:0060964 regulation of gene silencing by miRNA(GO:0060964)
0.2 1.0 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.2 1.0 GO:0043409 negative regulation of MAP kinase activity(GO:0043407) negative regulation of MAPK cascade(GO:0043409)
0.2 0.7 GO:0045046 protein import into peroxisome membrane(GO:0045046)
0.2 0.5 GO:0044277 cell wall modification involved in abscission(GO:0009830) cell wall disassembly(GO:0044277)
0.2 1.1 GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase(GO:0033540)
0.2 0.8 GO:0019433 triglyceride catabolic process(GO:0019433)
0.1 0.6 GO:0006501 C-terminal protein lipidation(GO:0006501)
0.1 0.9 GO:0002230 positive regulation of defense response to virus by host(GO:0002230)
0.1 1.2 GO:1901001 negative regulation of response to salt stress(GO:1901001)
0.1 0.6 GO:1901336 lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601)
0.1 0.4 GO:0046459 short-chain fatty acid metabolic process(GO:0046459)
0.1 1.1 GO:0046473 phosphatidic acid metabolic process(GO:0046473)
0.1 1.1 GO:0032456 endocytic recycling(GO:0032456)
0.1 2.6 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.1 0.5 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.1 1.2 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)
0.1 0.6 GO:0046622 positive regulation of organ growth(GO:0046622)
0.1 0.8 GO:0043328 protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043328)
0.1 0.5 GO:0010507 negative regulation of autophagy(GO:0010507)
0.1 1.4 GO:0015914 phospholipid transport(GO:0015914)
0.1 1.4 GO:0031539 positive regulation of anthocyanin metabolic process(GO:0031539)
0.1 1.3 GO:0015749 monosaccharide transport(GO:0015749)
0.1 0.2 GO:1900111 positive regulation of histone H3-K9 dimethylation(GO:1900111)
0.1 0.3 GO:0019695 choline metabolic process(GO:0019695)
0.1 1.7 GO:0009299 mRNA transcription(GO:0009299)
0.1 0.5 GO:0045922 negative regulation of fatty acid metabolic process(GO:0045922)
0.1 0.3 GO:0010213 non-photoreactive DNA repair(GO:0010213)
0.1 0.3 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.1 0.4 GO:0071494 cellular response to UV-C(GO:0071494)
0.1 1.2 GO:0002221 pattern recognition receptor signaling pathway(GO:0002221)
0.1 0.4 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.1 0.6 GO:1990019 protein storage vacuole organization(GO:1990019)
0.1 0.2 GO:0009747 hexokinase-dependent signaling(GO:0009747)
0.1 0.5 GO:0019566 arabinose metabolic process(GO:0019566)
0.1 0.4 GO:1902326 positive regulation of chlorophyll biosynthetic process(GO:1902326)
0.1 0.3 GO:0016598 protein arginylation(GO:0016598)
0.1 0.6 GO:0010222 stem vascular tissue pattern formation(GO:0010222)
0.1 0.4 GO:0019419 sulfate reduction(GO:0019419)
0.1 1.1 GO:0071326 cellular response to monosaccharide stimulus(GO:0071326) cellular response to hexose stimulus(GO:0071331) cellular response to glucose stimulus(GO:0071333)
0.1 0.3 GO:0000491 small nucleolar ribonucleoprotein complex assembly(GO:0000491)
0.1 0.6 GO:0097034 respiratory chain complex IV assembly(GO:0008535) mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034)
0.1 0.2 GO:0051639 actin filament network formation(GO:0051639)
0.1 0.7 GO:0018344 protein geranylgeranylation(GO:0018344)
0.1 0.2 GO:2000653 guard cell fate commitment(GO:0010377) regulation of G1/S transition of mitotic cell cycle(GO:2000045) regulation of genetic imprinting(GO:2000653)
0.1 1.0 GO:0032365 intracellular lipid transport(GO:0032365)
0.1 1.0 GO:0009649 entrainment of circadian clock(GO:0009649)
0.1 0.9 GO:0034063 stress granule assembly(GO:0034063)
0.1 0.8 GO:1900457 regulation of brassinosteroid mediated signaling pathway(GO:1900457)
0.1 0.3 GO:0000056 ribosomal small subunit export from nucleus(GO:0000056)
0.1 0.3 GO:0018315 molybdenum incorporation into molybdenum-molybdopterin complex(GO:0018315) metal incorporation into metallo-molybdopterin complex(GO:0042040)
0.1 0.3 GO:0048442 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.1 0.4 GO:0080187 floral organ senescence(GO:0080187)
0.1 0.3 GO:0031929 TOR signaling(GO:0031929)
0.1 1.1 GO:0000266 mitochondrial fission(GO:0000266)
0.1 0.3 GO:0010390 histone monoubiquitination(GO:0010390)
0.1 0.7 GO:0060260 regulation of transcription initiation from RNA polymerase II promoter(GO:0060260) positive regulation of transcription initiation from RNA polymerase II promoter(GO:0060261) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.1 0.7 GO:0000103 sulfate assimilation(GO:0000103)
0.1 0.3 GO:0070676 intralumenal vesicle formation(GO:0070676)
0.1 0.3 GO:1901976 regulation of cell cycle checkpoint(GO:1901976)
0.1 0.5 GO:0009061 anaerobic respiration(GO:0009061)
0.1 0.7 GO:0009610 response to symbiotic fungus(GO:0009610)
0.1 0.2 GO:0080182 simple leaf morphogenesis(GO:0060776) histone H3-K4 trimethylation(GO:0080182)
0.1 0.2 GO:0010971 positive regulation of G2/M transition of mitotic cell cycle(GO:0010971) positive regulation of cell cycle G2/M phase transition(GO:1902751)
0.1 0.1 GO:0046461 neutral lipid catabolic process(GO:0046461) acylglycerol catabolic process(GO:0046464)
0.1 1.2 GO:0006826 iron ion transport(GO:0006826)
0.1 0.3 GO:0010362 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of ion transport(GO:0043271) negative regulation of transport(GO:0051051) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.1 0.8 GO:1902074 response to salt(GO:1902074)
0.1 0.6 GO:0043171 peptide catabolic process(GO:0043171)
0.1 1.2 GO:0043666 regulation of phosphoprotein phosphatase activity(GO:0043666)
0.1 0.3 GO:0043479 pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.1 1.2 GO:0051260 protein homooligomerization(GO:0051260)
0.1 0.9 GO:0015743 malate transport(GO:0015743)
0.1 1.1 GO:0002238 response to molecule of fungal origin(GO:0002238)
0.0 0.9 GO:0000373 Group II intron splicing(GO:0000373)
0.0 1.6 GO:0006995 cellular response to nitrogen starvation(GO:0006995)
0.0 0.2 GO:0016255 attachment of GPI anchor to protein(GO:0016255)
0.0 0.1 GO:1900369 negative regulation of gene silencing by RNA(GO:0060967) negative regulation of RNA interference(GO:1900369)
0.0 2.6 GO:0051607 defense response to virus(GO:0051607)
0.0 0.8 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.5 GO:0018202 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.0 0.3 GO:0006598 polyamine catabolic process(GO:0006598)
0.0 0.1 GO:0001560 regulation of cell growth by extracellular stimulus(GO:0001560)
0.0 0.2 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.0 1.0 GO:0006817 phosphate ion transport(GO:0006817)
0.0 2.4 GO:0055046 microgametogenesis(GO:0055046)
0.0 0.2 GO:1905157 positive regulation of photosynthesis(GO:1905157)
0.0 0.2 GO:0032260 response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance(GO:0032260)
0.0 0.4 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 0.4 GO:0006312 mitotic recombination(GO:0006312)
0.0 0.4 GO:0009939 positive regulation of gibberellic acid mediated signaling pathway(GO:0009939)
0.0 0.2 GO:0007023 post-chaperonin tubulin folding pathway(GO:0007023)
0.0 0.8 GO:0051259 protein oligomerization(GO:0051259)
0.0 0.6 GO:0070298 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 1.3 GO:0098754 detoxification(GO:0098754)
0.0 0.3 GO:0045739 positive regulation of DNA repair(GO:0045739)
0.0 0.2 GO:0009584 detection of visible light(GO:0009584)
0.0 0.1 GO:0008334 histone mRNA metabolic process(GO:0008334)
0.0 2.6 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.0 0.7 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 0.1 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.0 0.1 GO:0010219 regulation of vernalization response(GO:0010219)
0.0 0.5 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.0 0.4 GO:0009051 pentose-phosphate shunt, oxidative branch(GO:0009051)
0.0 0.2 GO:0010306 rhamnogalacturonan II biosynthetic process(GO:0010306) rhamnogalacturonan II metabolic process(GO:0010396)
0.0 0.2 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.0 6.6 GO:0071453 cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456)
0.0 1.1 GO:0000741 karyogamy(GO:0000741) polar nucleus fusion(GO:0010197)
0.0 0.1 GO:1900370 positive regulation of RNA interference(GO:1900370)
0.0 0.4 GO:0035196 production of miRNAs involved in gene silencing by miRNA(GO:0035196)
0.0 0.7 GO:0006890 retrograde vesicle-mediated transport, Golgi to ER(GO:0006890)
0.0 0.2 GO:0046835 carbohydrate phosphorylation(GO:0046835)
0.0 0.3 GO:0050898 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.0 0.2 GO:0051452 vacuolar acidification(GO:0007035) intracellular pH reduction(GO:0051452)
0.0 0.1 GO:0010483 pollen tube reception(GO:0010483) intraspecies interaction between organisms(GO:0051703)
0.0 0.2 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.0 0.4 GO:0009098 leucine biosynthetic process(GO:0009098)
0.0 0.7 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.0 0.1 GO:0015739 sialic acid transport(GO:0015739)
0.0 0.4 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.0 1.1 GO:0045292 mRNA cis splicing, via spliceosome(GO:0045292)
0.0 0.1 GO:0010495 long-distance posttranscriptional gene silencing(GO:0010495)
0.0 0.4 GO:0060688 regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032)
0.0 0.7 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.0 0.5 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.0 0.2 GO:0036065 fucosylation(GO:0036065)
0.0 1.2 GO:0008037 cell recognition(GO:0008037) recognition of pollen(GO:0048544)
0.0 0.2 GO:0043462 regulation of ATPase activity(GO:0043462)
0.0 0.4 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.0 1.0 GO:0009863 salicylic acid mediated signaling pathway(GO:0009863)
0.0 0.4 GO:0000460 maturation of 5.8S rRNA(GO:0000460)
0.0 1.1 GO:0006413 translational initiation(GO:0006413)
0.0 0.2 GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287)
0.0 0.1 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.4 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.0 0.5 GO:0051170 nuclear import(GO:0051170)
0.0 0.2 GO:0009870 defense response signaling pathway, resistance gene-dependent(GO:0009870)
0.0 0.8 GO:0034050 plant-type hypersensitive response(GO:0009626) host programmed cell death induced by symbiont(GO:0034050)
0.0 0.1 GO:0002832 negative regulation of response to biotic stimulus(GO:0002832) negative regulation of response to external stimulus(GO:0032102)
0.0 0.4 GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462)
0.0 0.3 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.0 0.2 GO:0051131 chaperone-mediated protein complex assembly(GO:0051131)
0.0 0.7 GO:0090305 nucleic acid phosphodiester bond hydrolysis(GO:0090305)
0.0 0.4 GO:0007030 Golgi organization(GO:0007030)
0.0 0.2 GO:1901000 regulation of response to salt stress(GO:1901000)
0.0 0.1 GO:2001289 lipid X metabolic process(GO:2001289)
0.0 0.4 GO:0009615 response to virus(GO:0009615)
0.0 0.3 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.0 0.3 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0 0.4 GO:0032784 regulation of DNA-templated transcription, elongation(GO:0032784)
0.0 0.2 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.0 0.5 GO:0071805 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.0 0.1 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.4 GO:0007031 peroxisome organization(GO:0007031)
0.0 0.4 GO:0007062 sister chromatid cohesion(GO:0007062)
0.0 0.5 GO:0006475 internal protein amino acid acetylation(GO:0006475) histone acetylation(GO:0016573) internal peptidyl-lysine acetylation(GO:0018393) peptidyl-lysine acetylation(GO:0018394)
0.0 0.3 GO:0016575 histone deacetylation(GO:0016575)
0.0 0.1 GO:0051775 response to redox state(GO:0051775)
0.0 0.1 GO:0015804 neutral amino acid transport(GO:0015804)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:0005775 vacuolar lumen(GO:0005775)
0.2 0.6 GO:0034274 Atg12-Atg5-Atg16 complex(GO:0034274)
0.2 1.4 GO:0090395 plant cell papilla(GO:0090395)
0.2 0.6 GO:0045334 clathrin-coated endocytic vesicle(GO:0045334)
0.2 0.8 GO:0031932 TORC2 complex(GO:0031932)
0.2 0.8 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.1 2.6 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.1 0.5 GO:0000811 GINS complex(GO:0000811)
0.1 0.6 GO:0005776 autophagosome(GO:0005776)
0.1 1.0 GO:0017119 Golgi transport complex(GO:0017119)
0.1 0.4 GO:0000839 ER ubiquitin ligase complex(GO:0000835) Hrd1p ubiquitin ligase complex(GO:0000836) Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.1 0.3 GO:0000814 ESCRT II complex(GO:0000814)
0.1 0.7 GO:0005968 Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.1 1.1 GO:0043230 extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561)
0.1 0.9 GO:0043189 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.1 1.1 GO:0005880 nuclear microtubule(GO:0005880)
0.1 0.2 GO:0032432 actin filament bundle(GO:0032432)
0.1 0.8 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.1 1.4 GO:0031012 extracellular matrix(GO:0031012)
0.1 0.6 GO:0071014 post-mRNA release spliceosomal complex(GO:0071014)
0.1 0.3 GO:0070552 BRISC complex(GO:0070552)
0.0 0.5 GO:0010168 ER body(GO:0010168)
0.0 0.2 GO:0042765 GPI-anchor transamidase complex(GO:0042765)
0.0 0.4 GO:0005956 protein kinase CK2 complex(GO:0005956)
0.0 0.3 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.3 GO:0016363 nuclear matrix(GO:0016363)
0.0 0.6 GO:0030687 preribosome, large subunit precursor(GO:0030687)
0.0 1.4 GO:0005778 peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903)
0.0 0.4 GO:0072546 ER membrane protein complex(GO:0072546)
0.0 0.9 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.0 0.2 GO:0048188 Set1C/COMPASS complex(GO:0048188)
0.0 0.2 GO:0005664 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.0 0.5 GO:0033179 proton-transporting V-type ATPase, V0 domain(GO:0033179)
0.0 0.6 GO:0035097 histone methyltransferase complex(GO:0035097)
0.0 0.5 GO:0005769 early endosome(GO:0005769)
0.0 0.1 GO:0034719 pICln-Sm protein complex(GO:0034715) SMN-Sm protein complex(GO:0034719)
0.0 0.3 GO:0019774 proteasome core complex, beta-subunit complex(GO:0019774)
0.0 0.7 GO:0046540 U4/U6 x U5 tri-snRNP complex(GO:0046540)
0.0 0.2 GO:0000974 Prp19 complex(GO:0000974)
0.0 0.4 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.0 0.1 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)
0.0 0.4 GO:0045275 mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275)
0.0 1.6 GO:0090406 pollen tube(GO:0090406)
0.0 0.5 GO:0005736 DNA-directed RNA polymerase I complex(GO:0005736)
0.0 0.2 GO:0008180 COP9 signalosome(GO:0008180)
0.0 0.3 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.0 0.2 GO:0031519 PcG protein complex(GO:0031519)
0.0 0.3 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.0 0.3 GO:0000815 ESCRT III complex(GO:0000815)
0.0 0.2 GO:0031305 integral component of mitochondrial inner membrane(GO:0031305)
0.0 1.3 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 0.3 GO:0005732 small nucleolar ribonucleoprotein complex(GO:0005732)
0.0 1.8 GO:0009705 plant-type vacuole membrane(GO:0009705)
0.0 0.1 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.0 0.3 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898) cell surface(GO:0009986)
0.0 0.4 GO:0000932 cytoplasmic mRNA processing body(GO:0000932)
0.0 0.3 GO:0005744 mitochondrial inner membrane presequence translocase complex(GO:0005744)
0.0 0.3 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 10.7 GO:0030054 cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044)
0.0 1.0 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 0.4 GO:0016592 mediator complex(GO:0016592)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 4.0 GO:0016768 spermine synthase activity(GO:0016768)
0.8 4.8 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
0.6 1.7 GO:0050502 trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502)
0.5 1.5 GO:0004557 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.4 1.6 GO:0008301 DNA binding, bending(GO:0008301)
0.3 1.0 GO:0019776 Atg8 ligase activity(GO:0019776) Atg8 activating enzyme activity(GO:0019779)
0.3 0.8 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.3 1.0 GO:0080042 ADP-glucose pyrophosphohydrolase activity(GO:0080042)
0.3 1.0 GO:0047782 coniferin beta-glucosidase activity(GO:0047782)
0.2 0.6 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.2 1.5 GO:0003997 acyl-CoA oxidase activity(GO:0003997)
0.2 0.9 GO:0035197 siRNA binding(GO:0035197)
0.2 0.7 GO:0000268 peroxisome targeting sequence binding(GO:0000268)
0.1 1.3 GO:0004020 adenylylsulfate kinase activity(GO:0004020)
0.1 1.0 GO:0033549 MAP kinase phosphatase activity(GO:0033549)
0.1 0.7 GO:0032454 histone demethylase activity (H3-K9 specific)(GO:0032454)
0.1 0.5 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
0.1 0.7 GO:0005354 galactose transmembrane transporter activity(GO:0005354)
0.1 2.6 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.1 0.4 GO:0047364 desulfoglucosinolate sulfotransferase activity(GO:0047364)
0.1 1.2 GO:0003988 acetyl-CoA C-acyltransferase activity(GO:0003988)
0.1 0.8 GO:0030544 Hsp70 protein binding(GO:0030544)
0.1 0.5 GO:0019784 NEDD8-specific protease activity(GO:0019784)
0.1 0.4 GO:0010331 gibberellin binding(GO:0010331)
0.1 1.1 GO:0008379 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.1 0.7 GO:0004663 Rab geranylgeranyltransferase activity(GO:0004663)
0.1 0.7 GO:0004416 hydroxyacylglutathione hydrolase activity(GO:0004416)
0.1 0.3 GO:0070003 threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.1 0.7 GO:0016312 inositol bisphosphate phosphatase activity(GO:0016312)
0.1 1.0 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.4 GO:0070006 metalloaminopeptidase activity(GO:0070006)
0.1 0.4 GO:1990381 ubiquitin-specific protease binding(GO:1990381)
0.1 0.4 GO:0009973 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.1 0.7 GO:0010178 IAA-amino acid conjugate hydrolase activity(GO:0010178)
0.1 1.1 GO:0015140 malate transmembrane transporter activity(GO:0015140)
0.1 1.3 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.1 0.5 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.1 0.3 GO:0008265 Mo-molybdopterin cofactor sulfurase activity(GO:0008265)
0.1 0.4 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.1 1.2 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.1 0.4 GO:0038199 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.1 0.3 GO:0004057 arginyltransferase activity(GO:0004057)
0.1 0.8 GO:0004366 glycerol-3-phosphate O-acyltransferase activity(GO:0004366)
0.1 1.1 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.1 1.4 GO:0004630 phospholipase D activity(GO:0004630) N-acylphosphatidylethanolamine-specific phospholipase D activity(GO:0070290)
0.1 0.6 GO:0005536 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.1 0.5 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.1 0.8 GO:0004806 triglyceride lipase activity(GO:0004806)
0.1 1.7 GO:0097602 cullin family protein binding(GO:0097602)
0.1 1.2 GO:0019903 protein phosphatase binding(GO:0019903)
0.1 0.9 GO:0010385 double-stranded methylated DNA binding(GO:0010385)
0.1 0.2 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.1 0.4 GO:0004345 glucose-6-phosphate dehydrogenase activity(GO:0004345)
0.1 1.1 GO:1901981 phosphatidylinositol phosphate binding(GO:1901981)
0.1 0.8 GO:0070300 phosphatidic acid binding(GO:0070300)
0.1 0.4 GO:0032036 myosin tail binding(GO:0032029) myosin heavy chain binding(GO:0032036) myosin XI tail binding(GO:0080115)
0.1 1.2 GO:0046961 proton-transporting ATPase activity, rotational mechanism(GO:0046961)
0.1 0.8 GO:0031420 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.1 0.6 GO:0034647 histone demethylase activity(GO:0032452) histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.1 1.0 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.1 0.4 GO:0002020 protease binding(GO:0002020)
0.0 0.8 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.3 GO:0008121 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.0 1.1 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.0 0.3 GO:0017108 5'-flap endonuclease activity(GO:0017108)
0.0 0.3 GO:0046592 polyamine oxidase activity(GO:0046592)
0.0 0.2 GO:0004335 galactokinase activity(GO:0004335)
0.0 0.8 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.5 GO:0017169 CDP-alcohol phosphatidyltransferase activity(GO:0017169)
0.0 0.2 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.0 0.1 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.0 0.3 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.0 0.6 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 0.2 GO:0048487 beta-tubulin binding(GO:0048487)
0.0 0.4 GO:0003691 double-stranded telomeric DNA binding(GO:0003691)
0.0 1.0 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 2.1 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.2 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.0 0.2 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.0 0.3 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.0 0.5 GO:0008195 phosphatidate phosphatase activity(GO:0008195)
0.0 6.3 GO:0042803 protein homodimerization activity(GO:0042803)
0.0 0.7 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 1.6 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 0.2 GO:0032977 membrane insertase activity(GO:0032977)
0.0 0.6 GO:0016411 acylglycerol O-acyltransferase activity(GO:0016411)
0.0 0.2 GO:0008235 metalloexopeptidase activity(GO:0008235)
0.0 0.3 GO:0015462 protein-transmembrane transporting ATPase activity(GO:0015462)
0.0 0.6 GO:0030276 clathrin binding(GO:0030276)
0.0 0.4 GO:0061608 nuclear localization sequence binding(GO:0008139) nuclear import signal receptor activity(GO:0061608)
0.0 0.2 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 0.1 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.0 0.3 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.1 GO:0004792 thiosulfate sulfurtransferase activity(GO:0004792)
0.0 0.1 GO:0018488 aryl-aldehyde oxidase activity(GO:0018488) indole-3-acetaldehyde oxidase activity(GO:0050302)
0.0 0.5 GO:0019200 carbohydrate kinase activity(GO:0019200)
0.0 0.3 GO:0070181 small ribosomal subunit rRNA binding(GO:0070181)
0.0 0.1 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.5 GO:0008143 poly(A) binding(GO:0008143)
0.0 1.1 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.0 1.1 GO:0043621 protein self-association(GO:0043621)
0.0 6.3 GO:0004842 ubiquitin-protein transferase activity(GO:0004842)
0.0 1.1 GO:0008080 N-acetyltransferase activity(GO:0008080)
0.0 0.7 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.5 GO:0004725 protein tyrosine phosphatase activity(GO:0004725)
0.0 0.7 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 0.5 GO:0072341 modified amino acid binding(GO:0072341)
0.0 0.9 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 0.3 GO:0005548 phospholipid transporter activity(GO:0005548)
0.0 1.0 GO:0003743 translation initiation factor activity(GO:0003743)
0.0 0.2 GO:0032451 demethylase activity(GO:0032451)
0.0 0.5 GO:0004702 receptor signaling protein serine/threonine kinase activity(GO:0004702) MAP kinase activity(GO:0004707)
0.0 0.0 GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity(GO:0004742) S-acetyltransferase activity(GO:0016418)
0.0 0.1 GO:0030332 cyclin binding(GO:0030332)
0.0 0.1 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.1 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.3 GO:0032934 sterol binding(GO:0032934)
0.0 0.1 GO:0015172 acidic amino acid transmembrane transporter activity(GO:0015172)
0.0 0.8 GO:0003724 RNA helicase activity(GO:0003724)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.1 PID AURORA A PATHWAY Aurora A signaling
0.2 0.6 PID NFAT TFPATHWAY Calcineurin-regulated NFAT-dependent transcription in lymphocytes
0.1 0.7 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.1 0.5 PID MTOR 4PATHWAY mTOR signaling pathway
0.0 0.1 SA G2 AND M PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
0.0 0.1 PID A6B1 A6B4 INTEGRIN PATHWAY a6b1 and a6b4 Integrin signaling
0.0 0.1 PID KIT PATHWAY Signaling events mediated by Stem cell factor receptor (c-Kit)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.4 REACTOME METABOLISM OF NUCLEOTIDES Genes involved in Metabolism of nucleotides
0.2 0.7 REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.1 0.4 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.1 0.4 REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell
0.1 0.3 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.1 1.3 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.1 0.2 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.0 0.2 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.0 0.3 REACTOME MEMBRANE TRAFFICKING Genes involved in Membrane Trafficking
0.0 0.2 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.0 0.1 REACTOME SIGNALING BY SCF KIT Genes involved in Signaling by SCF-KIT