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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G10480
Z-value: 3.31
Transcription factors associated with AT3G10480
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G10480
|
AT3G10480 | NAC domain containing protein 50 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC050 | arTal_v1_Chr3_+_3264348_3264348 | -0.93 | 7.8e-13 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 18.92 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 18.11 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 18.05 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 16.34 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 14.92 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 14.73 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 14.52 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 13.51 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 13.36 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 12.86 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G10480
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 58.8 | GO:0019684 | photosynthesis, light reaction(GO:0019684) |
| 0.7 | 58.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.8 | 55.7 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 3.0 | 54.7 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 1.3 | 53.3 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 1.6 | 48.6 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 1.4 | 47.8 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 7.2 | 43.1 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 2.4 | 38.9 | GO:0015976 | carbon utilization(GO:0015976) |
| 1.8 | 34.9 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 225.8 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 93.5 | GO:0005576 | extracellular region(GO:0005576) |
| 1.6 | 92.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.3 | 67.8 | GO:0048046 | apoplast(GO:0048046) |
| 1.1 | 63.0 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.2 | 62.7 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.3 | 54.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 4.9 | 43.7 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.2 | 32.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 1.6 | 26.7 | GO:0009531 | secondary cell wall(GO:0009531) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.3 | 97.8 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.8 | 61.4 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 57.4 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 2.3 | 52.2 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 8.2 | 49.4 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.6 | 39.3 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 1.2 | 38.9 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.3 | 35.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 3.7 | 33.3 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 1.2 | 31.1 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 8.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.8 | 5.1 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.6 | 4.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.4 | 2.9 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.4 | 2.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.5 | 2.4 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.4 | 2.1 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.6 | 1.9 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.5 | 1.8 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 1.5 | 1.5 | PID IFNG PATHWAY | IFN-gamma pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.3 | 25.7 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 1.6 | 7.8 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.3 | 6.9 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.7 | 5.8 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 1.0 | 5.0 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.9 | 4.6 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 1.5 | 4.4 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.6 | 4.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 1.1 | 3.4 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.8 | 2.5 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |