Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT3G10113
Z-value: 1.01
Transcription factors associated with AT3G10113
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G10113
|
AT3G10113 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G10113 | arTal_v1_Chr3_-_3119391_3119391 | -0.06 | 7.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 4.23 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 4.09 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 4.06 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 3.93 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 3.92 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 3.79 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 3.78 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 3.66 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 3.54 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 3.50 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G10113
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 44.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 34.8 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.2 | 23.2 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.1 | 17.3 | GO:0009651 | response to salt stress(GO:0009651) |
| 0.4 | 16.5 | GO:1901421 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) positive regulation of response to alcohol(GO:1901421) |
| 0.3 | 16.1 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.3 | 14.9 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.3 | 13.2 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.2 | 12.4 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.2 | 11.6 | GO:0000380 | alternative mRNA splicing, via spliceosome(GO:0000380) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 96.0 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 34.4 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 23.2 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 17.2 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.2 | 14.9 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 13.9 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.2 | 9.9 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.5 | 9.1 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.2 | 8.3 | GO:0016592 | mediator complex(GO:0016592) |
| 0.3 | 8.0 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 25.5 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.2 | 24.9 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.4 | 21.8 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.2 | 18.6 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 17.0 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.3 | 14.3 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.1 | 14.3 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.2 | 14.1 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.2 | 13.9 | GO:0036459 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
| 0.1 | 9.6 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.1 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
| 0.5 | 2.7 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.3 | 2.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.4 | 2.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.4 | 1.8 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.3 | 1.5 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.2 | 1.4 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.2 | 1.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 0.9 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.2 | 0.8 | PID IL4 2PATHWAY | IL4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 3.6 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.3 | 3.6 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.9 | 2.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.6 | 2.5 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.4 | 1.8 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.3 | 1.5 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.3 | 1.5 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.2 | 1.5 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.5 | 1.4 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
| 0.5 | 1.4 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |