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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G10030
Z-value: 0.73
Transcription factors associated with AT3G10030
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G10030
|
AT3G10030 | aspartate/glutamate/uridylate kinase family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G10030 | arTal_v1_Chr3_-_3094945_3095025 | -0.46 | 1.4e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 1.94 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 1.67 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 1.63 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr3_-_3356811_3356811 Show fit | 1.51 |
AT3G10720.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr1_-_59215_59215 Show fit | 1.50 |
AT1G01120.1
|
3-ketoacyl-CoA synthase 1 |
|
| arTal_v1_Chr2_-_15790139_15790139 Show fit | 1.17 |
AT2G37640.1
|
Barwin-like endoglucanases superfamily protein |
|
| arTal_v1_Chr2_-_15789605_15789605 Show fit | 1.15 |
AT2G37640.2
|
Barwin-like endoglucanases superfamily protein |
|
| arTal_v1_Chr3_-_6436046_6436046 Show fit | 1.15 |
AT3G18710.1
|
plant U-box 29 |
|
| arTal_v1_Chr3_+_18262290_18262511 Show fit | 1.14 |
AT3G49260.1
AT3G49260.3 AT3G49260.2 AT3G49260.4 |
IQ-domain 21 |
|
| arTal_v1_Chr3_+_23345754_23345754 Show fit | 1.14 |
AT3G63200.1
|
PATATIN-like protein 9 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G10030
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 2.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 1.6 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 1.5 | GO:0030497 | fatty acid elongation(GO:0030497) |
| 0.0 | 1.4 | GO:0009958 | positive gravitropism(GO:0009958) |
| 0.0 | 1.1 | GO:0010114 | response to red light(GO:0010114) |
| 0.0 | 1.0 | GO:0048825 | cotyledon development(GO:0048825) |
| 0.0 | 0.8 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.0 | 0.8 | GO:0030641 | regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453) |
| 0.2 | 0.7 | GO:0071457 | cellular response to ozone(GO:0071457) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.1 | 0.8 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
| 0.2 | 0.6 | GO:0035371 | microtubule plus-end(GO:0035371) |
| 0.0 | 0.6 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.0 | 0.5 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.0 | 0.4 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 0.3 | GO:0031965 | nuclear membrane(GO:0031965) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.4 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.5 | 2.1 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.2 | 1.7 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.1 | 1.7 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.1 | 1.7 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.2 | 1.5 | GO:0009922 | fatty acid elongase activity(GO:0009922) |
| 0.1 | 1.3 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 0.1 | 1.3 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.0 | 1.3 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.1 | 1.1 | GO:0070696 | transmembrane receptor protein serine/threonine kinase binding(GO:0070696) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.2 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.0 | 0.1 | PID FCER1 PATHWAY | Fc-epsilon receptor I signaling in mast cells |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.2 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.0 | 0.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |