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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G09735
Z-value: 2.47
Transcription factors associated with AT3G09735
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G09735
|
AT3G09735 | S1FA-like DNA-binding protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G09735 | arTal_v1_Chr3_-_2987990_2987990 | 0.89 | 2.9e-10 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 11.80 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 10.67 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr2_+_12600914_12601033 Show fit | 10.42 |
AT2G29350.2
AT2G29350.1 AT2G29350.3 |
senescence-associated gene 13 |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 10.40 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 10.37 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 10.36 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr4_+_285876_285876 Show fit | 10.24 |
AT4G00700.2
AT4G00700.1 |
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
|
| arTal_v1_Chr2_+_10906460_10906460 Show fit | 10.21 |
AT2G25625.2
|
histone deacetylase-like protein |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 10.19 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr1_-_11668690_11668690 Show fit | 9.97 |
AT1G32350.1
AT1G32350.2 |
alternative oxidase 1D |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G09735
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 91.9 | GO:0001666 | response to hypoxia(GO:0001666) |
| 0.2 | 55.8 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
| 0.4 | 47.4 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.1 | 40.2 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
| 0.4 | 31.2 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.4 | 30.8 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.7 | 28.1 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.5 | 27.3 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.6 | 25.0 | GO:0006986 | response to unfolded protein(GO:0006986) |
| 0.5 | 24.3 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 171.9 | GO:0005634 | nucleus(GO:0005634) |
| 0.1 | 39.2 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 28.7 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.4 | 28.1 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.3 | 27.1 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.2 | 23.5 | GO:0044217 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.1 | 21.3 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 20.9 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.1 | 20.0 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.4 | 17.7 | GO:0000323 | lytic vacuole(GO:0000323) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 52.0 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.8 | 45.6 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.3 | 40.9 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.2 | 38.0 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.5 | 36.8 | GO:0036459 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
| 0.3 | 36.1 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.3 | 36.1 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.1 | 30.4 | GO:0020037 | heme binding(GO:0020037) |
| 1.0 | 27.7 | GO:0051787 | misfolded protein binding(GO:0051787) |
| 0.4 | 23.7 | GO:0035091 | phosphatidylinositol binding(GO:0035091) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 8.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 2.3 | 7.0 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 1.9 | 5.7 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.6 | 4.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.8 | 3.8 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.7 | 2.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.6 | 1.9 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.5 | 1.4 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.3 | 1.4 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.3 | 1.3 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 11.8 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.9 | 8.4 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 2.1 | 6.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 1.4 | 5.4 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.8 | 5.1 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.3 | 4.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.4 | 4.0 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.6 | 2.8 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
| 0.5 | 2.8 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.8 | 2.5 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |