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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G09600
Z-value: 1.11
Transcription factors associated with AT3G09600
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G09600
|
AT3G09600 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RVE8 | arTal_v1_Chr3_+_2946239_2946382 | 0.66 | 1.3e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 5.36 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 5.15 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 4.69 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 4.53 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 4.37 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr5_+_3358787_3358787 Show fit | 4.36 |
AT5G10625.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 4.31 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 4.28 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 4.25 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 4.25 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G09600
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 24.0 | GO:0071453 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.4 | 17.0 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.0 | 15.0 | GO:0032446 | protein modification by small protein conjugation(GO:0032446) |
| 0.4 | 12.6 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.2 | 11.9 | GO:0009615 | response to virus(GO:0009615) |
| 0.2 | 11.3 | GO:0042542 | response to hydrogen peroxide(GO:0042542) |
| 0.8 | 11.0 | GO:0015996 | chlorophyll catabolic process(GO:0015996) |
| 0.2 | 11.0 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.3 | 10.8 | GO:0009682 | induced systemic resistance(GO:0009682) |
| 0.1 | 9.4 | GO:0016579 | protein deubiquitination(GO:0016579) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 37.4 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 26.4 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 25.0 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.2 | 22.9 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.2 | 13.2 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.0 | 12.9 | GO:0030054 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.1 | 9.5 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 7.6 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 7.6 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.2 | 7.4 | GO:0010008 | endosome membrane(GO:0010008) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 33.8 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.1 | 16.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 15.8 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 13.4 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 11.0 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.2 | 10.9 | GO:0005096 | GTPase activator activity(GO:0005096) |
| 0.1 | 9.4 | GO:0101005 | ubiquitinyl hydrolase activity(GO:0101005) |
| 0.8 | 9.0 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.2 | 8.4 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.1 | 8.4 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.5 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
| 0.5 | 2.8 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.4 | 2.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 2.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.3 | 2.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.3 | 1.6 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.3 | 1.0 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 0.7 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.1 | 0.7 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.3 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 1.1 | 3.4 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.6 | 2.2 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.4 | 2.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.2 | 1.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 1.6 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.5 | 1.5 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.4 | 1.5 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.3 | 1.4 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.3 | 1.3 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |