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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G06490
Z-value: 0.50
Transcription factors associated with AT3G06490
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G06490
|
AT3G06490 | myb domain protein 108 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB108 | arTal_v1_Chr3_+_2003393_2003393 | 0.12 | 5.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_9247540_9247540 Show fit | 0.89 |
AT5G26340.1
|
Major facilitator superfamily protein |
|
| arTal_v1_Chr5_+_7718118_7718118 Show fit | 0.87 |
AT5G23020.1
|
2-isopropylmalate synthase 2 |
|
| arTal_v1_Chr3_+_11033665_11033665 Show fit | 0.85 |
AT3G29035.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr1_+_2341447_2341447 Show fit | 0.75 |
AT1G07610.1
|
metallothionein 1C |
|
| arTal_v1_Chr2_-_13946790_13946790 Show fit | 0.74 |
AT2G32870.1
AT2G32870.2 |
TRAF-like family protein |
|
| arTal_v1_Chr1_-_25446952_25446952 Show fit | 0.73 |
AT1G67865.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_25447622_25447622 Show fit | 0.73 |
AT1G67865.2
|
hypothetical protein |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 0.66 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr5_+_25550937_25550937 Show fit | 0.65 |
AT5G63850.1
|
amino acid permease 4 |
|
| arTal_v1_Chr2_-_15599951_15599951 Show fit | 0.65 |
AT2G37130.2
|
Peroxidase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G06490
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.8 | GO:0050832 | defense response to fungus(GO:0050832) |
| 0.1 | 0.9 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
| 0.1 | 0.9 | GO:1902290 | positive regulation of defense response to oomycetes(GO:1902290) |
| 0.1 | 0.9 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 0.1 | 0.9 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
| 0.2 | 0.8 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.1 | 0.8 | GO:0006524 | alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) L-alanine metabolic process(GO:0042851) L-alanine catabolic process(GO:0042853) |
| 0.0 | 0.8 | GO:0019758 | S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761) |
| 0.2 | 0.7 | GO:1900378 | positive regulation of secondary metabolite biosynthetic process(GO:1900378) |
| 0.0 | 0.7 | GO:0046688 | response to copper ion(GO:0046688) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.4 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
| 0.0 | 0.9 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 0.8 | GO:0031306 | intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307) |
| 0.1 | 0.5 | GO:0000153 | cytoplasmic ubiquitin ligase complex(GO:0000153) |
| 0.0 | 0.4 | GO:0035861 | site of double-strand break(GO:0035861) |
| 0.0 | 0.4 | GO:0005880 | nuclear microtubule(GO:0005880) |
| 0.0 | 0.4 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 0.3 | GO:0072379 | ER membrane insertion complex(GO:0072379) |
| 0.0 | 0.3 | GO:0005968 | Rab-protein geranylgeranyltransferase complex(GO:0005968) |
| 0.0 | 0.2 | GO:0005947 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.3 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.2 | 1.0 | GO:0015369 | calcium:proton antiporter activity(GO:0015369) |
| 0.2 | 0.9 | GO:0003852 | 2-isopropylmalate synthase activity(GO:0003852) |
| 0.1 | 0.9 | GO:0009815 | 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815) |
| 0.2 | 0.8 | GO:0005355 | glucose transmembrane transporter activity(GO:0005355) |
| 0.1 | 0.8 | GO:0047958 | glycine:2-oxoglutarate aminotransferase activity(GO:0047958) |
| 0.1 | 0.8 | GO:0080109 | indole-3-acetonitrile nitrile hydratase activity(GO:0080109) |
| 0.1 | 0.6 | GO:0015172 | acidic amino acid transmembrane transporter activity(GO:0015172) |
| 0.1 | 0.4 | GO:0000403 | Y-form DNA binding(GO:0000403) flap-structured DNA binding(GO:0070336) |
| 0.1 | 0.4 | GO:0015119 | hexose phosphate transmembrane transporter activity(GO:0015119) glucose-6-phosphate transmembrane transporter activity(GO:0015152) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.2 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.0 | 0.2 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.0 | 0.1 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.0 | 0.1 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.0 | 0.1 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.0 | 0.0 | PID LYMPH ANGIOGENESIS PATHWAY | VEGFR3 signaling in lymphatic endothelium |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.0 | 0.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.1 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
| 0.0 | 0.1 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.0 | 0.1 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.0 | 0.1 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.0 | 0.0 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
| 0.0 | 0.0 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |