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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G06490

Z-value: 0.50

Transcription factors associated with AT3G06490

Gene Symbol Gene ID Gene Info
AT3G06490 myb domain protein 108

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
MYB108arTal_v1_Chr3_+_2003393_20033930.125.5e-01Click!

Activity profile of AT3G06490 motif

Sorted Z-values of AT3G06490 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_-_9247540 0.89 AT5G26340.1
Major facilitator superfamily protein
Chr5_+_7718118 0.87 AT5G23020.1
2-isopropylmalate synthase 2
Chr3_+_11033665 0.85 AT3G29035.1
NAC domain containing protein 3
Chr1_+_2341447 0.75 AT1G07610.1
metallothionein 1C
Chr2_-_13946790 0.74 AT2G32870.1
AT2G32870.2
TRAF-like family protein
Chr1_-_25446952 0.73 AT1G67865.1
hypothetical protein
Chr1_-_25447622 0.73 AT1G67865.2
hypothetical protein
Chr3_+_18873911 0.66 AT3G50770.1
calmodulin-like 41
Chr5_+_25550937 0.65 AT5G63850.1
amino acid permease 4
Chr2_-_15599951 0.65 AT2G37130.2
Peroxidase superfamily protein
Chr2_-_15600154 0.63 AT2G37130.1
Peroxidase superfamily protein
Chr3_+_22602816 0.63 AT3G61060.1
AT3G61060.2
phloem protein 2-A13
Chr3_-_7818985 0.63 AT3G22160.1
VQ motif-containing protein
Chr3_+_19239305 0.61 AT3G51860.1
AT3G51860.2
cation exchanger 3
Chr4_+_8294446 0.60 AT4G14400.2
AT4G14400.3
ankyrin repeat family protein
Chr5_-_3447278 0.57 AT5G10930.1
CBL-interacting protein kinase 5
Chr4_-_10591546 0.53 AT4G19420.3
AT4G19420.2
AT4G19420.1
Pectinacetylesterase family protein
Chr4_+_17631500 0.52 AT4G37520.1
AT4G37520.2
Peroxidase superfamily protein
Chr4_+_8294165 0.52 AT4G14400.1
ankyrin repeat family protein
Chr3_-_6258426 0.51 AT3G18250.1
Putative membrane lipoprotein
Chr2_-_15729170 0.51 AT2G37460.1
nodulin MtN21 /EamA-like transporter family protein
Chr1_+_7404328 0.50 AT1G21140.1
Vacuolar iron transporter (VIT) family protein
Chr1_-_28284036 0.50 AT1G75380.3
AT1G75380.1
AT1G75380.2
AT1G75380.4
bifunctional nuclease in basal defense response 1
Chr1_-_3323735 0.49 AT1G10140.1
Uncharacterized conserved protein UCP031279
Chr3_+_19431095 0.47 AT3G52430.1
alpha/beta-Hydrolases superfamily protein
Chr4_-_6151245 0.46 AT4G09760.2
AT4G09760.3
AT4G09760.4
AT4G09760.1
Protein kinase superfamily protein
Chr5_+_25739131 0.44 AT5G64370.1
beta-ureidopropionase
Chr4_-_10590700 0.44 AT4G19420.4
Pectinacetylesterase family protein
Chr5_-_17458800 0.43 AT5G43450.2
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_-_17458980 0.42 AT5G43450.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_17324909 0.41 AT5G43150.1
elongation factor
Chr5_-_3735133 0.41 AT5G11600.2
AT5G11600.1
hypothetical protein
Chr3_-_11384145 0.40 AT3G29575.1
AT3G29575.4
AT3G29575.3
ABI five binding protein 3
Chr2_+_11860218 0.40 AT2G27830.1
hypothetical protein
Chr4_+_2324878 0.40 AT4G04610.1
APS reductase 1
Chr5_-_15825566 0.39 AT5G39520.1
hypothetical protein (DUF1997)
Chr2_-_10155699 0.39 AT2G23840.1
HNH endonuclease
Chr1_+_18030704 0.39 AT1G48745.1
hypothetical protein
Chr2_+_14783254 0.39 AT2G35070.1
AT2G35070.2
transmembrane protein
Chr2_-_19412328 0.39 AT2G47270.1
transcription factor UPBEAT protein
Chr1_+_3349082 0.38 AT1G10210.1
AT1G10210.3
AT1G10210.2
mitogen-activated protein kinase 1
Chr2_-_15993276 0.38 AT2G38170.2
AT2G38170.3
AT2G38170.1
cation exchanger 1
Chr1_+_5608682 0.38 AT1G16410.1
AT1G16410.2
cytochrome p450 79f1
Chr4_-_7992429 0.38 AT4G13770.1
cytochrome P450, family 83, subfamily A, polypeptide 1
Chr5_-_15279317 0.38 AT5G38240.1
AT5G38240.2
AT5G38240.3
Protein kinase family protein
Chr5_-_9961271 0.37 AT5G27930.3
AT5G27930.2
Protein phosphatase 2C family protein
Chr1_-_17285749 0.37 AT1G47128.1
Granulin repeat cysteine protease family protein
Chr2_-_9357967 0.37 AT2G21970.1
stress enhanced protein 2
Chr1_+_22932760 0.36 AT1G62040.1
AT1G62040.2
Ubiquitin-like superfamily protein
Chr3_+_16745873 0.36 AT3G45620.1
AT3G45620.2
Transducin/WD40 repeat-like superfamily protein
Chr3_+_10442608 0.36 AT3G28050.1
nodulin MtN21 /EamA-like transporter family protein
Chr4_+_18466519 0.36 AT4G39795.1
hypothetical protein (DUF581)
Chr3_+_4889063 0.36 AT3G14560.1
hypothetical protein
Chr5_-_19807853 0.35 AT5G48850.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_21910471 0.35 AT5G53970.1
Tyrosine transaminase family protein
Chr1_+_8164782 0.35 AT1G23040.1
hydroxyproline-rich glycoprotein family protein
Chr2_-_7256831 0.35 AT2G16720.1
myb domain protein 7
Chr1_+_8164959 0.35 AT1G23040.3
AT1G23040.2
hydroxyproline-rich glycoprotein family protein
Chr5_+_9310797 0.35 AT5G26690.1
Heavy metal transport/detoxification superfamily protein
Chr1_-_18680300 0.35 AT1G50420.1
scarecrow-like 3
Chr5_-_25146587 0.34 AT5G62630.1
hipl2 protein precursor
Chr3_+_20564236 0.34 AT3G55470.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr4_+_1501168 0.33 AT4G03410.2
AT4G03410.1
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Chr3_+_20564081 0.33 AT3G55470.2
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr1_+_28145978 0.32 AT1G74940.1
cyclin-dependent kinase, putative (DUF581)
Chr1_+_5290747 0.32 AT1G15380.2
Lactoylglutathione lyase / glyoxalase I family protein
Chr5_-_9961055 0.32 AT5G27930.1
Protein phosphatase 2C family protein
Chr3_-_19255794 0.32 AT3G51895.1
AT3G51895.2
sulfate transporter 3;1
Chr5_-_8074286 0.32 AT5G23920.1
transmembrane protein
Chr3_-_19165322 0.32 AT3G51660.1
Tautomerase/MIF superfamily protein
Chr4_-_12062757 0.32 AT4G23010.2
AT4G23010.1
AT4G23010.3
UDP-galactose transporter 2
Chr2_+_9645270 0.32 AT2G22680.1
Zinc finger (C3HC4-type RING finger) family protein
Chr4_+_11265479 0.32 AT4G21105.3
AT4G21105.1
cytochrome-c oxidase/ electron carrier
Chr1_-_8537780 0.32 AT1G24140.1
Matrixin family protein
Chr3_+_815550 0.31 AT3G03440.1
ARM repeat superfamily protein
Chr4_-_16347364 0.31 AT4G34135.1
AT4G34135.2
UDP-glucosyltransferase 73B2
Chr1_+_5290582 0.31 AT1G15380.1
Lactoylglutathione lyase / glyoxalase I family protein
Chr1_+_12004854 0.31 AT1G33110.1
AT1G33110.2
MATE efflux family protein
Chr5_+_19678825 0.31 AT5G48550.2
AT5G48550.1
F-box associated ubiquitination effector family protein
Chr5_-_9000345 0.31 AT5G25820.1
Exostosin family protein
Chr3_-_6804114 0.31 AT3G19580.2
zinc-finger protein 2
Chr2_-_9210231 0.31 AT2G21500.1
AT2G21500.2
RING/U-box superfamily protein
Chr5_+_8773734 0.31 AT5G25280.1
AT5G25280.3
AT5G25280.2
serine-rich protein-like protein
Chr2_+_8324653 0.31 AT2G19180.2
AT2G19180.1
hypothetical protein
Chr4_-_367274 0.30 AT4G00880.1
SAUR-like auxin-responsive protein family
Chr4_+_1464467 0.30 AT4G03320.1
translocon at the inner envelope membrane of chloroplasts 20-IV
Chr4_+_11265658 0.30 AT4G21105.2
cytochrome-c oxidase/ electron carrier
Chr2_-_16780368 0.30 AT2G40170.1
Stress induced protein
Chr3_-_3197457 0.29 AT3G10320.1
Glycosyltransferase family 61 protein
Chr3_+_23309737 0.29 AT3G63080.1
glutathione peroxidase 5
Chr1_-_10561545 0.29 AT1G30090.1
Galactose oxidase/kelch repeat superfamily protein
Chr3_+_8172479 0.29 AT3G23000.1
CBL-interacting protein kinase 7
Chr3_-_6804296 0.29 AT3G19580.1
zinc-finger protein 2
Chr5_-_9164816 0.29 AT5G26220.2
AT5G26220.1
ChaC-like family protein
Chr3_-_19981086 0.28 AT3G53960.1
Major facilitator superfamily protein
Chr4_+_1511597 0.28 AT4G03420.1
hypothetical protein (DUF789)
Chr5_-_20977668 0.28 AT5G51640.1
trichome birefringence-like protein (DUF828)
Chr5_-_25168060 0.28 AT5G62680.1
Major facilitator superfamily protein
Chr1_+_2034156 0.28 AT1G06645.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_26540818 0.28 AT1G70420.1
DNA ligase-like protein, putative (DUF1645)
Chr3_-_9710100 0.28 AT3G26500.1
plant intracellular ras group-related LRR 2
Chr3_-_1044678 0.28 AT3G04030.2
AT3G04030.5
AT3G04030.1
AT3G04030.3
Homeodomain-like superfamily protein
Chr1_-_2825481 0.28 AT1G08820.2
AT1G08820.4
AT1G08820.5
AT1G08820.3
vamp/synaptobrevin-associated protein 27-2
Chr4_-_16662549 0.28 AT4G34990.1
myb domain protein 32
Chr3_-_21303230 0.28 AT3G57540.1
Remorin family protein
Chr4_+_16553145 0.27 AT4G34680.2
AT4G34680.1
GATA transcription factor 3
Chr5_-_2079005 0.27 AT5G06720.1
peroxidase 2
Chr1_+_16847684 0.27 AT1G44414.1
zinc-ribbon domain protein
Chr5_-_8893036 0.27 AT5G25540.2
AT5G25540.1
CTC-interacting domain 6
Chr5_-_20833815 0.27 AT5G51260.1
AT5G51260.2
HAD superfamily, subfamily IIIB acid phosphatase
Chr1_+_7767924 0.27 AT1G22040.1
Galactose oxidase/kelch repeat superfamily protein
Chr4_-_14619573 0.27 AT4G29900.2
AT4G29900.1
autoinhibited Ca(2+)-ATPase 10
Chr2_-_15623104 0.26 AT2G37200.1
AT2G37200.2
Uncharacterized protein family (UPF0497)
Chr1_+_26612359 0.26 AT1G70580.2
AT1G70580.1
alanine-2-oxoglutarate aminotransferase 2
Chr5_-_23707003 0.26 AT5G58670.1
phospholipase C1
Chr5_-_25713574 0.26 AT5G64280.1
dicarboxylate transporter 2.2
Chr1_-_22984359 0.26 AT1G62200.2
AT1G62200.1
AT1G62200.3
Major facilitator superfamily protein
Chr5_-_22133688 0.26 AT5G54510.1
Auxin-responsive GH3 family protein
Chr2_-_9706217 0.26 AT2G22800.1
Homeobox-leucine zipper protein family
Chr5_+_17676795 0.26 AT5G43930.1
AT5G43930.3
AT5G43930.4
AT5G43930.2
Transducin family protein / WD-40 repeat family protein
Chr1_+_26612999 0.26 AT1G70580.3
alanine-2-oxoglutarate aminotransferase 2
Chr1_+_26612768 0.26 AT1G70580.4
alanine-2-oxoglutarate aminotransferase 2
Chr4_-_6632641 0.26 AT4G10770.2
AT4G10770.1
oligopeptide transporter 7
Chr4_-_10567838 0.25 AT4G19370.1
chitin synthase, putative (DUF1218)
Chr4_+_12134973 0.25 AT4G23170.1
receptor-like protein kinase-related family protein
Chr4_+_17130246 0.25 AT4G36210.2
AT4G36210.1
AT4G36210.3
transmembrane/coiled-coil protein (DUF726)
Chr5_-_22237370 0.25 AT5G54730.1
yeast autophagy 18 F-like protein
Chr2_+_324365 0.25 AT2G01735.2
AT2G01735.1
RING-finger protein for embryogenesi
Chr2_-_16014991 0.25 AT2G38240.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_+_18510056 0.25 AT3G49930.1
C2H2 and C2HC zinc fingers superfamily protein
Chr5_-_7094503 0.24 AT5G20910.1
RING/U-box superfamily protein
Chr3_-_5073440 0.24 AT3G15070.1
AT3G15070.2
RING/U-box superfamily protein
Chr2_-_9991526 0.24 AT2G23450.1
Protein kinase superfamily protein
Chr5_-_25381317 0.24 AT5G63350.1
von willebrand factor A domain protein
Chr1_+_26731782 0.24 AT1G70900.1
hypothetical protein
Chr2_-_9992010 0.24 AT2G23450.2
Protein kinase superfamily protein
Chr5_+_10856661 0.24 AT5G28830.1
calcium-binding EF hand family protein
Chr1_+_10244453 0.24 AT1G29290.1
B-cell lymphoma 6 protein
Chr5_-_17843678 0.24 AT5G44290.1
AT5G44290.4
AT5G44290.5
AT5G44290.3
AT5G44290.2
AT5G44290.6
AT5G44290.7
Protein kinase superfamily protein
Chr2_-_7311787 0.24 AT2G16870.2
AT2G16870.3
AT2G16870.1
Disease resistance protein (TIR-NBS-LRR class) family
Chr5_-_16336017 0.24 AT5G40800.1
hypothetical protein
Chr4_-_9144583 0.23 AT4G16146.1
cAMP-regulated phosphoprotein 19-related protein
Chr3_+_18129452 0.23 AT3G48890.1
membrane-associated progesterone binding protein 3
Chr5_-_26906517 0.23 AT5G67420.1
AT5G67420.2
LOB domain-containing protein 37
Chr1_+_2035718 0.23 AT1G06650.1
AT1G06650.2
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_-_8892689 0.23 AT5G25540.3
CTC-interacting domain 6
Chr2_+_7248138 0.23 AT2G16710.2
AT2G16710.1
AT2G16710.3
Iron-sulfur cluster biosynthesis family protein
Chr1_-_2590609 0.23 AT1G08250.1
arogenate dehydratase 6
Chr1_+_27372197 0.23 AT1G72710.1
casein kinase 1-like protein 2
Chr1_+_3325799 0.23 AT1G10150.1
Carbohydrate-binding protein
Chr2_-_476650 0.23 AT2G02010.1
glutamate decarboxylase 4
Chr5_+_20921377 0.23 AT5G51510.1
jagunal-like protein
Chr5_+_15911350 0.23 AT5G39760.1
homeobox protein 23
Chr5_-_22236551 0.23 AT5G54730.2
yeast autophagy 18 F-like protein
Chr2_-_7919345 0.22 AT2G18193.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr2_-_12935773 0.22 AT2G30350.1
AT2G30350.2
Excinuclease ABC, C subunit, N-terminal
Chr5_-_20537071 0.22 AT5G50430.2
AT5G50430.3
AT5G50430.1
ubiquitin-conjugating enzyme 33
Chr1_-_6460405 0.22 AT1G18720.2
ER membrane protein, putative (DUF962)
Chr1_-_6460210 0.22 AT1G18720.1
ER membrane protein, putative (DUF962)
Chr4_+_12564945 0.22 AT4G24220.1
AT4G24220.2
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_18701882 0.22 AT1G50480.1
10-formyltetrahydrofolate synthetase
Chr5_-_18386871 0.22 AT5G45360.1
F-box family protein
Chr2_-_4418539 0.22 AT2G11140.1

Chr2_-_476997 0.22 AT2G02010.2
glutamate decarboxylase 4
Chr1_-_27407540 0.22 AT1G72830.2
nuclear factor Y, subunit A3
Chr2_-_11349548 0.22 AT2G26690.3
Major facilitator superfamily protein
Chr4_+_9928587 0.22 AT4G17870.1
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr1_+_14158452 0.21 AT1G37130.1
nitrate reductase 2
Chr2_+_205775 0.21 AT2G01460.3
AT2G01460.2
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_29994962 0.21 AT1G79710.3
AT1G79710.1
AT1G79710.2
Major facilitator superfamily protein
Chr2_-_11350045 0.21 AT2G26690.2
Major facilitator superfamily protein
Chr5_+_26292372 0.21 AT5G65710.1
HAESA-like 2
Chr5_-_1580875 0.21 AT5G05340.1
Peroxidase superfamily protein
Chr3_-_2998190 0.21 AT3G09770.2
AT3G09770.1
RING/U-box superfamily protein
Chr3_+_868741 0.21 AT3G03610.1
AT3G03610.3
AT3G03610.2
AT3G03610.4
ELMO/CED-12 family protein
Chr3_-_5038114 0.21 AT3G14960.1
Galactosyltransferase family protein
Chr3_+_15986864 0.21 AT3G44310.3
nitrilase 1
Chr5_+_22261134 0.20 AT5G54800.1
glucose 6-phosphate/phosphate translocator 1
Chr1_-_10044150 0.20 AT1G28570.2
AT1G28570.1
SGNH hydrolase-type esterase superfamily protein
Chr1_-_2825275 0.20 AT1G08820.1
vamp/synaptobrevin-associated protein 27-2
Chr3_+_15986624 0.20 AT3G44310.1
nitrilase 1
Chr3_+_21384146 0.20 AT3G57690.1
arabinogalactan protein 23
Chr3_-_1290891 0.20 AT3G04730.1
indoleacetic acid-induced protein 16
Chr4_-_9935685 0.20 AT4G17880.1
Basic helix-loop-helix (bHLH) DNA-binding family protein
Chr1_-_3419691 0.20 AT1G10410.1
CW14 protein (DUF1336)
Chr1_-_9451768 0.20 AT1G27200.1
glycosyltransferase family protein (DUF23)
Chr1_-_27407968 0.20 AT1G72830.3
nuclear factor Y, subunit A3
Chr3_+_4934330 0.20 AT3G14680.1
cytochrome P450, family 72, subfamily A, polypeptide 14
Chr1_-_16800307 0.20 AT1G44170.2
AT1G44170.1
aldehyde dehydrogenase 3H1
Chr5_-_20169923 0.20 AT5G49665.1
Zinc finger (C3HC4-type RING finger) family protein
Chr5_-_5692920 0.20 AT5G17300.2
AT5G17300.1
Homeodomain-like superfamily protein
Chr1_-_21007855 0.19 AT1G56140.1
Leucine-rich repeat transmembrane protein kinase
Chr1_-_7504274 0.19 AT1G21440.1
AT1G21440.2
Phosphoenolpyruvate carboxylase family protein
Chr5_-_26126560 0.19 AT5G65380.1
MATE efflux family protein
Chr3_+_22304152 0.19 AT3G60340.2
AT3G60340.1
alpha/beta-Hydrolases superfamily protein
Chr1_-_11258814 0.19 AT1G31440.1
SH3 domain-containing protein
Chr1_-_4755656 0.19 AT1G13900.1
Purple acid phosphatases superfamily protein
Chr3_-_8734562 0.19 AT3G24170.3
AT3G24170.1
glutathione-disulfide reductase
Chr1_-_16767685 0.19 AT1G44100.1
amino acid permease 5
Chr5_+_21673432 0.19 AT5G53420.4
AT5G53420.1
AT5G53420.5
AT5G53420.3
CCT motif family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G06490

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.2 0.8 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.2 0.6 GO:0010351 lithium ion transport(GO:0010351)
0.1 0.4 GO:0046521 sphingoid catabolic process(GO:0046521)
0.1 0.4 GO:0006212 uracil catabolic process(GO:0006212) beta-alanine biosynthetic process(GO:0019483)
0.1 0.4 GO:0045002 DNA double-strand break processing involved in repair via single-strand annealing(GO:0010792) double-strand break repair via single-strand annealing(GO:0045002)
0.1 0.3 GO:0015717 triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436)
0.1 0.4 GO:1902457 negative regulation of stomatal opening(GO:1902457)
0.1 0.8 GO:0006524 alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) L-alanine metabolic process(GO:0042851) L-alanine catabolic process(GO:0042853)
0.1 0.9 GO:0051410 detoxification of nitrogen compound(GO:0051410)
0.1 0.3 GO:0002215 defense response to nematode(GO:0002215)
0.1 0.9 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.1 0.4 GO:0019419 sulfate reduction(GO:0019419)
0.1 0.9 GO:0015749 monosaccharide transport(GO:0015749)
0.1 0.4 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
0.1 0.2 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.1 0.2 GO:0015802 basic amino acid transport(GO:0015802)
0.1 0.4 GO:0070141 response to UV-A(GO:0070141) cellular response to UV-A(GO:0071492)
0.1 0.2 GO:0006057 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506)
0.1 0.9 GO:0009098 leucine biosynthetic process(GO:0009098)
0.1 0.2 GO:0001887 selenium compound metabolic process(GO:0001887)
0.1 0.2 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.1 0.3 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.1 0.2 GO:0033530 raffinose metabolic process(GO:0033530)
0.1 0.2 GO:0090224 regulation of mitotic spindle organization(GO:0060236) regulation of spindle organization(GO:0090224)
0.1 0.2 GO:0016110 tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124)
0.1 0.4 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.0 0.3 GO:0015785 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.0 0.5 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.0 0.4 GO:0006882 cellular zinc ion homeostasis(GO:0006882)
0.0 0.1 GO:1902289 negative regulation of defense response to oomycetes(GO:1902289)
0.0 0.4 GO:0006570 tyrosine metabolic process(GO:0006570)
0.0 0.2 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.0 0.1 GO:0016237 lysosomal microautophagy(GO:0016237) piecemeal microautophagy of nucleus(GO:0034727) single-organism membrane invagination(GO:1902534)
0.0 0.2 GO:0031468 nuclear envelope reassembly(GO:0031468)
0.0 0.1 GO:0042891 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891) toxin transport(GO:1901998)
0.0 0.2 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.0 0.2 GO:0046487 glyoxylate metabolic process(GO:0046487)
0.0 0.7 GO:0046688 response to copper ion(GO:0046688)
0.0 0.1 GO:0046898 response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.0 0.2 GO:0060866 leaf abscission(GO:0060866)
0.0 0.5 GO:0015833 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 0.2 GO:0019632 shikimate metabolic process(GO:0019632)
0.0 0.3 GO:0018344 protein geranylgeranylation(GO:0018344)
0.0 0.3 GO:0051553 flavone biosynthetic process(GO:0051553) flavonol biosynthetic process(GO:0051555)
0.0 0.2 GO:0097428 protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.0 0.1 GO:1900111 positive regulation of histone H3-K9 dimethylation(GO:1900111)
0.0 0.4 GO:0006538 glutamate catabolic process(GO:0006538)
0.0 0.2 GO:0034227 tRNA thio-modification(GO:0034227)
0.0 0.1 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.0 0.1 GO:0010213 non-photoreactive DNA repair(GO:0010213)
0.0 0.3 GO:0010262 somatic embryogenesis(GO:0010262)
0.0 0.1 GO:0032957 inositol trisphosphate metabolic process(GO:0032957)
0.0 0.2 GO:1902025 nitrate import(GO:1902025)
0.0 0.6 GO:2000031 regulation of salicylic acid mediated signaling pathway(GO:2000031)
0.0 0.2 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.0 0.1 GO:0042256 mature ribosome assembly(GO:0042256)
0.0 0.1 GO:0010500 transmitting tissue development(GO:0010500)
0.0 0.3 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.0 0.2 GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement(GO:1901527)
0.0 0.1 GO:0010444 guard mother cell cytokinesis(GO:0010235) guard mother cell differentiation(GO:0010444)
0.0 0.2 GO:0071484 cellular response to light intensity(GO:0071484)
0.0 0.2 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
0.0 0.2 GO:0009303 rRNA transcription(GO:0009303)
0.0 0.1 GO:0061014 positive regulation of mRNA catabolic process(GO:0061014)
0.0 0.1 GO:0006751 glutathione catabolic process(GO:0006751)
0.0 0.1 GO:1901537 positive regulation of DNA demethylation(GO:1901537)
0.0 0.2 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.0 0.2 GO:0009095 L-phenylalanine biosynthetic process(GO:0009094) aromatic amino acid family biosynthetic process, prephenate pathway(GO:0009095) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.8 GO:0019758 S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761)
0.0 0.1 GO:0032877 positive regulation of DNA endoreduplication(GO:0032877) positive regulation of DNA-dependent DNA replication(GO:2000105)
0.0 0.2 GO:0042732 D-xylose metabolic process(GO:0042732)
0.0 0.2 GO:0007584 response to nutrient(GO:0007584)
0.0 0.1 GO:0032456 endocytic recycling(GO:0032456)
0.0 0.1 GO:0070509 calcium ion import(GO:0070509)
0.0 0.1 GO:0051289 protein homotetramerization(GO:0051289)
0.0 0.2 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.0 0.1 GO:0010124 phenylacetate catabolic process(GO:0010124)
0.0 0.1 GO:0006000 fructose metabolic process(GO:0006000)
0.0 0.5 GO:0016575 histone deacetylation(GO:0016575)
0.0 0.3 GO:0048015 phosphatidylinositol-mediated signaling(GO:0048015)
0.0 0.1 GO:0007032 endosome organization(GO:0007032)
0.0 0.2 GO:0007029 endoplasmic reticulum organization(GO:0007029)
0.0 0.1 GO:0009558 embryo sac cellularization(GO:0009558)
0.0 0.1 GO:0071249 cellular response to nitrate(GO:0071249)
0.0 0.1 GO:0043462 regulation of ATPase activity(GO:0043462)
0.0 0.5 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 0.2 GO:0009231 riboflavin metabolic process(GO:0006771) riboflavin biosynthetic process(GO:0009231)
0.0 0.3 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.0 0.4 GO:0009269 response to desiccation(GO:0009269)
0.0 0.0 GO:0043132 NAD transport(GO:0043132)
0.0 0.3 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.0 0.2 GO:0006620 posttranslational protein targeting to membrane(GO:0006620)
0.0 0.4 GO:0006995 cellular response to nitrogen starvation(GO:0006995)
0.0 0.1 GO:0080175 phragmoplast microtubule organization(GO:0080175)
0.0 0.2 GO:0050779 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.0 0.2 GO:0072506 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.0 0.3 GO:0043069 negative regulation of programmed cell death(GO:0043069)
0.0 0.2 GO:0007008 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.0 0.1 GO:0046512 sphingosine metabolic process(GO:0006670) diol metabolic process(GO:0034311) diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.0 0.1 GO:0051014 actin filament severing(GO:0051014)
0.0 0.2 GO:0019511 protein hydroxylation(GO:0018126) peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) peptidyl-proline hydroxylation(GO:0019511)
0.0 0.1 GO:0048446 petal morphogenesis(GO:0048446)
0.0 0.0 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.0 0.1 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.1 GO:0046339 diacylglycerol metabolic process(GO:0046339)
0.0 0.1 GO:0042276 error-prone translesion synthesis(GO:0042276)
0.0 0.0 GO:0010731 protein glutathionylation(GO:0010731)
0.0 2.8 GO:0050832 defense response to fungus(GO:0050832)
0.0 0.7 GO:0042538 hyperosmotic salinity response(GO:0042538)
0.0 0.0 GO:0006741 NADP biosynthetic process(GO:0006741)
0.0 0.2 GO:0006465 signal peptide processing(GO:0006465)
0.0 0.2 GO:0031408 oxylipin metabolic process(GO:0031407) oxylipin biosynthetic process(GO:0031408)
0.0 0.1 GO:0052542 defense response by callose deposition(GO:0052542)
0.0 0.2 GO:0080027 response to herbivore(GO:0080027)
0.0 0.2 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0000153 cytoplasmic ubiquitin ligase complex(GO:0000153)
0.0 0.9 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.0 0.2 GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.0 0.3 GO:0072379 ER membrane insertion complex(GO:0072379)
0.0 0.3 GO:0005968 Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.0 0.4 GO:0035861 site of double-strand break(GO:0035861)
0.0 0.8 GO:0031306 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.0 0.2 GO:0044545 NSL complex(GO:0044545)
0.0 0.4 GO:0005880 nuclear microtubule(GO:0005880)
0.0 0.1 GO:0035102 PRC1 complex(GO:0035102)
0.0 0.1 GO:0034703 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.0 1.4 GO:0030176 integral component of endoplasmic reticulum membrane(GO:0030176)
0.0 0.1 GO:0032045 guanyl-nucleotide exchange factor complex(GO:0032045)
0.0 0.1 GO:0005956 protein kinase CK2 complex(GO:0005956)
0.0 0.1 GO:0055037 recycling endosome(GO:0055037)
0.0 0.4 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.0 0.1 GO:0043625 delta DNA polymerase complex(GO:0043625)
0.0 0.0 GO:0000110 nucleotide-excision repair factor 1 complex(GO:0000110)
0.0 0.2 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.0 0.1 GO:0005884 actin filament(GO:0005884)
0.0 0.1 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.1 GO:0042555 MCM complex(GO:0042555)
0.0 0.1 GO:0031519 PcG protein complex(GO:0031519)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.2 1.0 GO:0015369 calcium:proton antiporter activity(GO:0015369)
0.2 0.8 GO:0005355 glucose transmembrane transporter activity(GO:0005355)
0.1 0.8 GO:0047958 glycine:2-oxoglutarate aminotransferase activity(GO:0047958)
0.1 0.8 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
0.1 0.4 GO:0000403 Y-form DNA binding(GO:0000403) flap-structured DNA binding(GO:0070336)
0.1 0.4 GO:0015119 hexose phosphate transmembrane transporter activity(GO:0015119) glucose-6-phosphate transmembrane transporter activity(GO:0015152)
0.1 0.3 GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166)
0.1 0.4 GO:0033741 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.1 0.2 GO:0035671 enone reductase activity(GO:0035671)
0.1 0.6 GO:0015172 acidic amino acid transmembrane transporter activity(GO:0015172)
0.1 0.2 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.1 0.4 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.1 0.2 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.1 0.9 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.1 0.3 GO:0015367 oxoglutarate:malate antiporter activity(GO:0015367)
0.1 0.2 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.1 0.2 GO:0050997 phosphatidylcholine binding(GO:0031210) quaternary ammonium group binding(GO:0050997)
0.1 0.4 GO:0098599 palmitoyl hydrolase activity(GO:0098599)
0.1 0.4 GO:0070547 L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547)
0.1 0.2 GO:0052692 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.1 0.3 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.0 0.2 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.0 0.1 GO:0030941 chloroplast targeting sequence binding(GO:0030941)
0.0 0.2 GO:0003919 FMN adenylyltransferase activity(GO:0003919)
0.0 0.4 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.0 0.3 GO:0004663 Rab geranylgeranyltransferase activity(GO:0004663)
0.0 0.2 GO:0004765 shikimate kinase activity(GO:0004765)
0.0 0.3 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.0 0.2 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.0 0.4 GO:0008865 fructokinase activity(GO:0008865)
0.0 0.2 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.0 0.2 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.2 GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity(GO:0046537)
0.0 0.1 GO:0052659 inositol-polyphosphate 5-phosphatase activity(GO:0004445) inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity(GO:0052659) inositol tetrakisphosphate phosphatase activity(GO:0052743)
0.0 0.3 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.0 0.1 GO:0004106 chorismate mutase activity(GO:0004106)
0.0 0.1 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)
0.0 0.3 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.0 0.1 GO:0016971 flavin-linked sulfhydryl oxidase activity(GO:0016971) thiol oxidase activity(GO:0016972)
0.0 0.3 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.0 0.1 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.0 0.1 GO:0019534 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.0 0.3 GO:0035673 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.0 0.1 GO:0016629 12-oxophytodienoate reductase activity(GO:0016629)
0.0 2.3 GO:0004601 peroxidase activity(GO:0004601)
0.0 0.1 GO:0019781 NEDD8 activating enzyme activity(GO:0019781)
0.0 0.1 GO:0015292 uniporter activity(GO:0015292)
0.0 0.1 GO:0051377 mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.0 0.1 GO:0017050 D-erythro-sphingosine kinase activity(GO:0017050)
0.0 0.2 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 0.1 GO:0004325 ferrochelatase activity(GO:0004325)
0.0 0.2 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.0 0.1 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.0 0.2 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.0 0.2 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.0 0.1 GO:0010178 IAA-amino acid conjugate hydrolase activity(GO:0010178)
0.0 0.4 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.0 0.1 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.0 0.1 GO:0017110 nucleoside-diphosphatase activity(GO:0017110)
0.0 0.1 GO:0050017 L-3-cyanoalanine synthase activity(GO:0050017)
0.0 0.1 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)
0.0 0.1 GO:0032266 phosphatidylinositol-3-phosphate binding(GO:0032266)
0.0 0.4 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.2 GO:0031418 L-ascorbic acid binding(GO:0031418)
0.0 0.2 GO:0035064 methylated histone binding(GO:0035064)
0.0 0.2 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 0.2 GO:0051117 ATPase binding(GO:0051117)
0.0 0.1 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.0 0.2 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 0.1 GO:0008732 threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732)
0.0 0.1 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.2 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.0 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.2 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.2 GO:0035529 NADH pyrophosphatase activity(GO:0035529)
0.0 0.2 GO:0019902 phosphatase binding(GO:0019902)
0.0 0.1 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 PID NFAT TFPATHWAY Calcineurin-regulated NFAT-dependent transcription in lymphocytes
0.1 0.2 PID AURORA A PATHWAY Aurora A signaling
0.0 0.2 PID PLK1 PATHWAY PLK1 signaling events
0.0 0.1 PID BETA CATENIN NUC PATHWAY Regulation of nuclear beta catenin signaling and target gene transcription
0.0 0.1 PID DELTA NP63 PATHWAY Validated transcriptional targets of deltaNp63 isoforms
0.0 0.1 PID ATF2 PATHWAY ATF-2 transcription factor network
0.0 0.0 PID LYMPH ANGIOGENESIS PATHWAY VEGFR3 signaling in lymphatic endothelium

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 REACTOME METABOLISM OF NUCLEOTIDES Genes involved in Metabolism of nucleotides
0.0 0.1 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.0 0.1 REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION Genes involved in Cyclin E associated events during G1/S transition
0.0 0.1 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase
0.0 0.1 REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS Genes involved in Synthesis of bile acids and bile salts
0.0 0.1 REACTOME GLUCOSE METABOLISM Genes involved in Glucose metabolism
0.0 0.0 REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS Genes involved in p130Cas linkage to MAPK signaling for integrins
0.0 0.0 REACTOME FORMATION OF INCISION COMPLEX IN GG NER Genes involved in Formation of incision complex in GG-NER