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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G04030
Z-value: 1.78
Transcription factors associated with AT3G04030
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G04030
|
AT3G04030 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYR2 | arTal_v1_Chr3_-_1044318_1044318 | 0.97 | 4.5e-18 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 13.27 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 9.30 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 9.11 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 8.83 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 8.37 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 8.28 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 8.25 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 8.10 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 8.01 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 7.84 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G04030
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 69.1 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
| 0.2 | 49.0 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.2 | 38.5 | GO:0071453 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.4 | 35.9 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.2 | 32.9 | GO:0016311 | dephosphorylation(GO:0016311) |
| 0.7 | 31.2 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.2 | 26.6 | GO:0050832 | defense response to fungus(GO:0050832) |
| 0.3 | 23.8 | GO:0007568 | aging(GO:0007568) |
| 3.8 | 22.7 | GO:0080187 | floral organ senescence(GO:0080187) |
| 0.3 | 22.7 | GO:0016579 | protein deubiquitination(GO:0016579) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 137.7 | GO:0005634 | nucleus(GO:0005634) |
| 0.0 | 83.1 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.2 | 45.1 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.7 | 33.3 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.4 | 30.0 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 27.9 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 1.2 | 22.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 20.9 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.3 | 18.3 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.1 | 17.7 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 113.6 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.6 | 46.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.4 | 42.0 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.7 | 39.0 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.3 | 36.6 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 30.9 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 29.1 | GO:0019001 | GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561) |
| 0.0 | 28.0 | GO:0044212 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.5 | 20.6 | GO:0015081 | sodium ion transmembrane transporter activity(GO:0015081) |
| 0.4 | 20.4 | GO:0005096 | GTPase activator activity(GO:0005096) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 9.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.9 | 5.4 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.6 | 3.2 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.4 | 2.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.3 | 2.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.6 | 1.7 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.4 | 1.6 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.4 | 1.6 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.5 | 1.5 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.5 | 1.1 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 16.6 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.3 | 10.1 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 1.5 | 5.8 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 1.3 | 5.0 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.8 | 4.0 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.5 | 3.9 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 1.2 | 3.5 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |
| 1.1 | 3.3 | REACTOME IL1 SIGNALING | Genes involved in Interleukin-1 signaling |
| 1.1 | 3.3 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 3.3 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |