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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G02940
Z-value: 1.70
Transcription factors associated with AT3G02940
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G02940
|
AT3G02940 | myb domain protein 107 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB107 | arTal_v1_Chr3_+_662012_662012 | 0.70 | 3.9e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 8.31 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 7.21 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 7.18 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr2_+_18066960_18066960 Show fit | 7.15 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 7.04 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 6.90 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr2_-_13101371_13101371 Show fit | 6.76 |
AT2G30750.1
|
cytochrome P450 family 71 polypeptide |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 6.74 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr3_-_2849686_2849686 Show fit | 6.58 |
AT3G09270.1
|
glutathione S-transferase TAU 8 |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 6.55 |
AT2G14610.1
|
pathogenesis-related protein 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G02940
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 61.3 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 26.8 | GO:0036294 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.2 | 23.0 | GO:0006470 | protein dephosphorylation(GO:0006470) |
| 0.2 | 20.6 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.4 | 20.3 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 1.4 | 18.8 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.2 | 16.3 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 15.0 | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process(GO:0043161) |
| 0.4 | 14.8 | GO:0043547 | positive regulation of GTPase activity(GO:0043547) |
| 0.2 | 13.0 | GO:0019722 | calcium-mediated signaling(GO:0019722) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 39.9 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 21.4 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.2 | 18.8 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.1 | 16.9 | GO:0000785 | chromatin(GO:0000785) |
| 0.9 | 16.8 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 14.5 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.1 | 13.2 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.5 | 11.7 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.2 | 11.5 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.2 | 10.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 45.1 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 34.1 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.2 | 23.1 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.2 | 21.1 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.2 | 20.8 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.3 | 15.6 | GO:0017137 | Rab GTPase binding(GO:0017137) |
| 0.4 | 14.5 | GO:0016597 | amino acid binding(GO:0016597) |
| 0.5 | 12.2 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
| 0.1 | 11.6 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 1.0 | 11.5 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 5.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 1.4 | 4.2 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.5 | 3.2 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 1.0 | 3.1 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.7 | 2.8 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.7 | 2.8 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.5 | 2.8 | PID PLK1 PATHWAY | PLK1 signaling events |
| 2.5 | 2.5 | PID LYSOPHOSPHOLIPID PATHWAY | LPA receptor mediated events |
| 0.8 | 2.3 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.8 | 2.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 4.4 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.4 | 4.0 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.3 | 4.0 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.3 | 3.4 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 0.6 | 3.2 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.8 | 2.3 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.4 | 2.2 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.4 | 2.0 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.6 | 1.9 | REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS | Genes involved in Phosphorylation of CD3 and TCR zeta chains |
| 0.3 | 1.7 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |