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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G01970
Z-value: 0.52
Transcription factors associated with AT3G01970
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G01970
|
AT3G01970 | WRKY DNA-binding protein 45 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY45 | arTal_v1_Chr3_-_327412_327412 | 0.59 | 9.1e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 1.48 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 1.24 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 1.17 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 1.13 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 1.11 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 1.10 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 1.09 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr2_-_13101371_13101371 Show fit | 1.06 |
AT2G30750.1
|
cytochrome P450 family 71 polypeptide |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 1.06 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 1.03 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G01970
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 14.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 11.2 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 4.6 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.1 | 2.9 | GO:0006623 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.0 | 2.6 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.2 | 2.5 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.4 | 2.0 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.1 | 2.0 | GO:0002238 | response to molecule of fungal origin(GO:0002238) |
| 0.1 | 1.9 | GO:0009682 | induced systemic resistance(GO:0009682) |
| 0.0 | 1.9 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.9 | GO:0009504 | cell plate(GO:0009504) |
| 0.0 | 1.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 1.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 1.5 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.5 | GO:0005770 | late endosome(GO:0005770) |
| 0.0 | 1.5 | GO:0044421 | extracellular region part(GO:0044421) |
| 0.2 | 1.4 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.1 | 1.3 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 1.3 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.0 | 1.3 | GO:0033646 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.5 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 7.0 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 5.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 4.8 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.2 | 3.7 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
| 0.0 | 3.7 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 2.7 | GO:0017137 | Rab GTPase binding(GO:0017137) |
| 0.1 | 2.6 | GO:0004707 | MAP kinase activity(GO:0004707) |
| 0.1 | 2.5 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
| 0.3 | 2.1 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
| 0.1 | 0.7 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.2 | 0.5 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.0 | 0.3 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.3 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.1 | 0.2 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.0 | 0.1 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.4 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.2 | 1.2 | REACTOME BILE ACID AND BILE SALT METABOLISM | Genes involved in Bile acid and bile salt metabolism |
| 0.1 | 1.1 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.0 | 0.8 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.0 | 0.7 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.1 | 0.5 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 0.4 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.0 | 0.4 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.3 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |