ISMARA results: AT3G01530

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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT3G01530

Z-value: 1.02

Transcription factors associated with AT3G01530

Gene Symbol	Gene ID	Gene Info
AT3G01530 TAIR	AT3G01530	myb domain protein 57

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
MYB57	arTal_v1_Chr3_-_211804_211804	0.82	9.0e-08	Click!

Activity profile of AT3G01530 motif

Sorted Z-values of AT3G01530 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr5_-_15825566_15825566 Show fit	3.06	AT5G39520.1	AT5G39520 TAIR Show fit	hypothetical protein (DUF1997)
arTal_v1_Chr1_-_20385380_20385380 Show fit	2.90	AT1G54570.1	PES1 TAIR Show fit	Esterase/lipase/thioesterase family protein
arTal_v1_Chr4_+_15828228_15828228 Show fit	2.74	AT4G32810.1 AT4G32810.2	CCD8 TAIR Show fit	carotenoid cleavage dioxygenase 8
arTal_v1_Chr3_-_20769324_20769410 Show fit	2.73	AT3G55970.2 AT3G55970.1	JRG21 TAIR Show fit	jasmonate-regulated gene 21
arTal_v1_Chr1_-_3752780_3752780 Show fit	2.66	AT1G11190.1	BFN1 TAIR Show fit	bifunctional nuclease i
arTal_v1_Chr3_-_3197457_3197457 Show fit	2.64	AT3G10320.1	AT3G10320 TAIR Show fit	Glycosyltransferase family 61 protein
arTal_v1_Chr3_-_6258426_6258426 Show fit	2.63	AT3G18250.1	AT3G18250 TAIR Show fit	Putative membrane lipoprotein
arTal_v1_Chr1_+_27538190_27538190 Show fit	2.55	AT1G73220.1	OCT1 TAIR Show fit	organic cation/carnitine transporter1
arTal_v1_Chr1_+_5820080_5820080 Show fit	2.51	AT1G17020.1	SRG1 TAIR Show fit	senescence-related gene 1
arTal_v1_Chr1_-_11668690_11668690 Show fit	2.46	AT1G32350.1 AT1G32350.2	AOX1D TAIR Show fit	alternative oxidase 1D

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G01530

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	14.4	GO:0006511	ubiquitin-dependent protein catabolic process(GO:0006511)
0.0	12.1	GO:0016567	protein ubiquitination(GO:0016567)
0.1	8.9	GO:0006470	protein dephosphorylation(GO:0006470)
0.1	8.6	GO:0016036	cellular response to phosphate starvation(GO:0016036)
0.1	7.4	GO:0016579	protein deubiquitination(GO:0016579)
0.0	6.6	GO:0071453	cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453)
0.1	6.2	GO:2000022	regulation of jasmonic acid mediated signaling pathway(GO:2000022)
1.1	5.4	GO:0072708	response to sorbitol(GO:0072708)
0.5	5.4	GO:0006308	DNA catabolic process(GO:0006308)
0.0	5.4	GO:0000398	mRNA splicing, via spliceosome(GO:0000398)

Showing 1 to 10 of 476 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	10.0	GO:0030054	cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044)
0.0	9.4	GO:0005730	nucleolus(GO:0005730)
0.1	7.9	GO:0000325	plant-type vacuole(GO:0000325)
0.1	7.4	GO:0005681	spliceosomal complex(GO:0005681)
0.1	6.6	GO:0000139	Golgi membrane(GO:0000139)
0.1	6.6	GO:0033647	host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.1	4.7	GO:0019005	SCF ubiquitin ligase complex(GO:0019005)
0.2	4.6	GO:0031965	nuclear membrane(GO:0031965)
0.3	4.4	GO:0000407	pre-autophagosomal structure(GO:0000407)
0.1	4.4	GO:0016592	mediator complex(GO:0016592)

Showing 1 to 10 of 179 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	25.0	GO:0004842	ubiquitin-protein transferase activity(GO:0004842)
0.1	8.6	GO:0046982	protein heterodimerization activity(GO:0046982)
0.1	8.1	GO:0036459	thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459)
0.1	8.0	GO:0000978	RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.1	7.6	GO:0061631	ubiquitin conjugating enzyme activity(GO:0061631)
0.2	7.0	GO:0008553	hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.1	6.7	GO:0004722	protein serine/threonine phosphatase activity(GO:0004722)
0.9	6.4	GO:0010279	indole-3-acetic acid amido synthetase activity(GO:0010279)
0.7	6.1	GO:0010436	carotenoid dioxygenase activity(GO:0010436)
0.1	6.0	GO:0042910	xenobiotic transporter activity(GO:0042910)

Showing 1 to 10 of 374 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	2.8	PID MTOR 4PATHWAY	mTOR signaling pathway
0.4	2.3	PID AP1 PATHWAY	AP-1 transcription factor network
0.5	1.5	PID AURORA A PATHWAY	Aurora A signaling
0.3	1.1	PID PLK1 PATHWAY	PLK1 signaling events
0.1	1.0	PID CXCR4 PATHWAY	CXCR4-mediated signaling events
0.3	0.9	PID P38 ALPHA BETA DOWNSTREAM PATHWAY	Signaling mediated by p38-alpha and p38-beta
0.3	0.9	PID IL12 2PATHWAY	IL12-mediated signaling events
0.2	0.9	PID HDAC CLASSI PATHWAY	Signaling events mediated by HDAC Class I
0.3	0.7	PID TAP63 PATHWAY	Validated transcriptional targets of TAp63 isoforms
0.2	0.6	PID BETA CATENIN NUC PATHWAY	Regulation of nuclear beta catenin signaling and target gene transcription

Showing 1 to 10 of 25 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.3	3.9	REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM	Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism
0.5	3.0	REACTOME METABOLISM OF VITAMINS AND COFACTORS	Genes involved in Metabolism of vitamins and cofactors
0.4	2.5	REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS	Genes involved in Glycerophospholipid biosynthesis
0.6	2.3	REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL	Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
0.1	1.7	REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT	Genes involved in ABC-family proteins mediated transport
0.2	1.5	REACTOME RNA POL II PRE TRANSCRIPTION EVENTS	Genes involved in RNA Polymerase II Pre-transcription Events
0.3	1.0	REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION	Genes involved in NOTCH1 Intracellular Domain Regulates Transcription
0.2	1.0	REACTOME MITOCHONDRIAL PROTEIN IMPORT	Genes involved in Mitochondrial Protein Import
0.3	0.9	REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS	Genes involved in Sphingolipid de novo biosynthesis
0.2	0.9	REACTOME L1CAM INTERACTIONS	Genes involved in L1CAM interactions

Showing 1 to 10 of 33 entries

Results for AT3G01530

Z-value: 1.02

Transcription factors associated with AT3G01530

Activity-expression correlation:

Activity profile of AT3G01530 motif

Sorted Z-values of AT3G01530 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G01530

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: