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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G47270
Z-value: 2.16
Transcription factors associated with AT2G47270
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G47270
|
AT2G47270 | transcription factor UPBEAT protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| UPB1 | arTal_v1_Chr2_-_19412328_19412328 | 0.97 | 3.1e-17 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 22.75 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 21.88 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 19.47 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr1_-_20385380_20385380 Show fit | 14.88 |
AT1G54570.1
|
Esterase/lipase/thioesterase family protein |
|
| arTal_v1_Chr3_-_1063103_1063234 Show fit | 14.08 |
AT3G04070.2
AT3G04070.1 |
NAC domain containing protein 47 |
|
| arTal_v1_Chr5_-_9247540_9247540 Show fit | 13.63 |
AT5G26340.1
|
Major facilitator superfamily protein |
|
| arTal_v1_Chr5_-_17994584_17994722 Show fit | 10.86 |
AT5G44610.3
AT5G44610.2 AT5G44610.1 |
microtubule-associated protein 18 |
|
| arTal_v1_Chr4_-_14393381_14393381 Show fit | 10.13 |
AT4G29190.1
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
|
| arTal_v1_Chr5_-_16085213_16085213 Show fit | 10.08 |
AT5G40240.3
AT5G40240.1 |
nodulin MtN21 /EamA-like transporter family protein |
|
| arTal_v1_Chr1_-_7086873_7086873 Show fit | 10.01 |
AT1G20440.1
|
cold-regulated 47 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G47270
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 6.5 | 19.5 | GO:0002215 | defense response to nematode(GO:0002215) |
| 0.0 | 17.9 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
| 3.7 | 14.9 | GO:0033306 | phytol metabolic process(GO:0033306) |
| 1.2 | 14.4 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 4.7 | 14.1 | GO:0033240 | positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764) |
| 3.6 | 10.9 | GO:0031115 | negative regulation of microtubule polymerization(GO:0031115) |
| 0.2 | 10.0 | GO:0010286 | heat acclimation(GO:0010286) |
| 1.1 | 9.9 | GO:0010230 | alternative respiration(GO:0010230) |
| 0.6 | 9.4 | GO:0072506 | phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506) |
| 0.4 | 7.6 | GO:0050779 | RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 48.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 26.8 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.2 | 25.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 17.8 | GO:0009506 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.2 | 14.9 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 9.9 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 7.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 1.1 | 6.5 | GO:0005776 | autophagosome(GO:0005776) |
| 0.3 | 6.4 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 5.2 | GO:0005759 | mitochondrial matrix(GO:0005759) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 30.0 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.2 | 22.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.9 | 19.5 | GO:0042973 | glucan endo-1,3-beta-D-glucosidase activity(GO:0042973) |
| 1.1 | 14.9 | GO:0004144 | diacylglycerol O-acyltransferase activity(GO:0004144) |
| 2.7 | 13.6 | GO:0005355 | glucose transmembrane transporter activity(GO:0005355) |
| 0.5 | 10.9 | GO:1901981 | phosphatidylinositol phosphate binding(GO:1901981) |
| 0.1 | 7.3 | GO:0005216 | ion channel activity(GO:0005216) |
| 1.2 | 7.2 | GO:0015193 | L-proline transmembrane transporter activity(GO:0015193) |
| 0.4 | 6.7 | GO:0034485 | phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485) |
| 0.1 | 6.4 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 4.9 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.6 | 4.0 | PID MTOR 4PATHWAY | mTOR signaling pathway |